RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 ACSBG1Q96GR2 724 aa16.6■□□□□ 0.25
TCOF1-201ENST00000323668 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.6■□□□□ 0.25
TCOF1-201ENST00000323668 PXDNLA1KZ92 1463 aa16.6■□□□□ 0.25
TCOF1-201ENST00000323668 RFX7Q2KHR2 1363 aa16.6■□□□□ 0.25
TCOF1-201ENST00000323668 PHKA1P46020 1223 aa16.6■□□□□ 0.25
TCOF1-201ENST00000323668 GNA11P29992 359 aa16.59■□□□□ 0.25
TCOF1-201ENST00000323668 FBXO38Q6PIJ6 1188 aa16.59■□□□□ 0.25
TCOF1-201ENST00000323668 AIFM3Q96NN9 605 aa16.59■□□□□ 0.25
TCOF1-201ENST00000323668 PHLPP2Q6ZVD8 1323 aa16.59■□□□□ 0.25
TCOF1-201ENST00000323668 RBM5P52756 815 aaKnown RBP eCLIP16.59■□□□□ 0.25
TCOF1-201ENST00000323668 PPARAQ07869 468 aa16.59■□□□□ 0.25
TCOF1-201ENST00000323668 CSGALNACT2Q8N6G5 542 aa16.59■□□□□ 0.25
TCOF1-201ENST00000323668 SPAG5Q96R06 1193 aa16.59■□□□□ 0.25
TCOF1-201ENST00000323668 GREM2Q9H772 168 aa16.59■□□□□ 0.25
TCOF1-201ENST00000323668 GJB4Q9NTQ9 266 aa16.59■□□□□ 0.25
TCOF1-201ENST00000323668 PPLO60437 1756 aa16.59■□□□□ 0.25
TCOF1-201ENST00000323668 MAATS1Q7Z4T9 603 aa16.59■□□□□ 0.25
TCOF1-201ENST00000323668 MACROD2A1Z1Q3 448 aa16.59■□□□□ 0.25
TCOF1-201ENST00000323668 ADD2P35612 726 aa16.59■□□□□ 0.25
TCOF1-201ENST00000323668 NAA30Q147X3 362 aaPredicted RBP16.59■□□□□ 0.25
TCOF1-201ENST00000323668 USPL1Q5W0Q7 1092 aa16.59■□□□□ 0.25
TCOF1-201ENST00000323668 C10orf67Q8IYJ2 551 aa16.59■□□□□ 0.25
TCOF1-201ENST00000323668 BLZF1Q9H2G9 400 aa16.59■□□□□ 0.25
TCOF1-201ENST00000323668 ERCC5P28715 1186 aaPredicted RBP16.58■□□□□ 0.25
TCOF1-201ENST00000323668 PPP1R2P41236 205 aa16.58■□□□□ 0.25
TCOF1-201ENST00000323668 GOLGA8FQ08AF8 430 aa16.58■□□□□ 0.25
TCOF1-201ENST00000323668 GOLGA8DPQ0D2H9 430 aa16.58■□□□□ 0.25
TCOF1-201ENST00000323668 IFFO1Q0D2I5 559 aa16.58■□□□□ 0.25
TCOF1-201ENST00000323668 RABGGTAQ92696 567 aa16.58■□□□□ 0.25
TCOF1-201ENST00000323668 OSBPL5Q9H0X9 879 aaPredicted RBP16.58■□□□□ 0.25
TCOF1-201ENST00000323668 DDX41Q9UJV9 622 aaKnown RBP16.58■□□□□ 0.25
TCOF1-201ENST00000323668 PTPRUQ92729 1446 aa16.58■□□□□ 0.25
TCOF1-201ENST00000323668 TAX1BP1Q86VP1 789 aa16.58■□□□□ 0.24
TCOF1-201ENST00000323668 NELFBQ8WX92 580 aa16.58■□□□□ 0.24
TCOF1-201ENST00000323668 NOC4LQ9BVI4 516 aaKnown RBP16.58■□□□□ 0.24
TCOF1-201ENST00000323668 BCCIPQ9P287 314 aaKnown RBP eCLIP16.58■□□□□ 0.24
TCOF1-201ENST00000323668 VSTM4Q8IW00 320 aa16.58■□□□□ 0.24
TCOF1-201ENST00000323668 CRACR2BQ8N4Y2 399 aaPredicted RBP16.58■□□□□ 0.24
TCOF1-201ENST00000323668 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.58■□□□□ 0.24
TCOF1-201ENST00000323668 FOXP1Q9H334 677 aaPredicted RBP16.58■□□□□ 0.24
TCOF1-201ENST00000323668 RNF187Q5TA31 235 aaPredicted RBP16.58■□□□□ 0.24
TCOF1-201ENST00000323668 KRT79Q5XKE5 535 aa16.58■□□□□ 0.24
TCOF1-201ENST00000323668 PDE4DQ08499 809 aa16.57■□□□□ 0.24
TCOF1-201ENST00000323668 IQCB1Q15051 598 aa16.57■□□□□ 0.24
TCOF1-201ENST00000323668 SETDB2Q96T68 719 aa16.57■□□□□ 0.24
TCOF1-201ENST00000323668 TNKSO95271 1327 aa16.57■□□□□ 0.24
TCOF1-201ENST00000323668 SH2B2O14492 632 aaPredicted RBP16.57■□□□□ 0.24
TCOF1-201ENST00000323668 PTPN21Q16825 1174 aa16.57■□□□□ 0.24
TCOF1-201ENST00000323668 LONRF3Q496Y0 759 aa16.57■□□□□ 0.24
TCOF1-201ENST00000323668 NEK11Q8NG66 645 aa16.57■□□□□ 0.24
TCOF1-201ENST00000323668 AXIN2Q9Y2T1 843 aa16.57■□□□□ 0.24
TCOF1-201ENST00000323668 LETM2Q2VYF4 491 aa16.57■□□□□ 0.24
TCOF1-201ENST00000323668 GIGYF2Q6Y7W6 1299 aaKnown RBP16.57■□□□□ 0.24
TCOF1-201ENST00000323668 IFNAR1P17181 557 aa16.57■□□□□ 0.24
TCOF1-201ENST00000323668 VAV2P52735 878 aa16.57■□□□□ 0.24
TCOF1-201ENST00000323668 DDB1Q16531 1140 aa16.57■□□□□ 0.24
TCOF1-201ENST00000323668 IFI16Q16666 785 aaKnown RBP16.57■□□□□ 0.24
TCOF1-201ENST00000323668 STOX1Q6ZVD7 989 aa16.57■□□□□ 0.24
TCOF1-201ENST00000323668 OR8K1Q8NGG5 319 aa16.57■□□□□ 0.24
TCOF1-201ENST00000323668 RPGRQ92834 1020 aaKnown RBP16.57■□□□□ 0.24
TCOF1-201ENST00000323668 NUP58Q9BVL2 599 aa16.57■□□□□ 0.24
TCOF1-201ENST00000323668 EBAG9O00559 213 aa16.56■□□□□ 0.24
TCOF1-201ENST00000323668 ATP8B1O43520 1251 aa16.56■□□□□ 0.24
TCOF1-201ENST00000323668 ENOX1Q8TC92 643 aaKnown RBP16.56■□□□□ 0.24
TCOF1-201ENST00000323668 JAKMIP2Q96AA8 810 aa16.56■□□□□ 0.24
TCOF1-201ENST00000323668 RRP36Q96EU6 259 aaKnown RBP16.56■□□□□ 0.24
TCOF1-201ENST00000323668 TSGA10Q9BZW7 698 aa16.56■□□□□ 0.24
TCOF1-201ENST00000323668 RASSF4Q9H2L5 321 aa16.56■□□□□ 0.24
TCOF1-201ENST00000323668 USP27XA6NNY8 438 aa16.56■□□□□ 0.24
TCOF1-201ENST00000323668 BBXQ8WY36 941 aaPredicted RBP16.56■□□□□ 0.24
TCOF1-201ENST00000323668 FMNL1O95466 1100 aaPredicted RBP16.56■□□□□ 0.24
TCOF1-201ENST00000323668 TAF6LQ9Y6J9 622 aa16.56■□□□□ 0.24
TCOF1-201ENST00000323668 FRMPD1Q5SYB0 1578 aa16.56■□□□□ 0.24
TCOF1-201ENST00000323668 HEG1Q9ULI3 1381 aa16.56■□□□□ 0.24
TCOF1-201ENST00000323668 SETD1BQ9UPS6 1966 aaKnown RBP16.56■□□□□ 0.24
TCOF1-201ENST00000323668 CLCN6P51797 869 aa16.56■□□□□ 0.24
TCOF1-201ENST00000323668 FAM76AQ8TAV0 307 aa16.56■□□□□ 0.24
TCOF1-201ENST00000323668 MAP3K15Q6ZN16 1313 aa16.55■□□□□ 0.24
TCOF1-201ENST00000323668 C6orf229H3BNL8 230 aa16.55■□□□□ 0.24
TCOF1-201ENST00000323668 WHAMMP3Q1A5X7 153 aa16.55■□□□□ 0.24
TCOF1-201ENST00000323668 KCNB2Q92953 911 aa16.55■□□□□ 0.24
TCOF1-201ENST00000323668 GSDMAQ96QA5 445 aa16.55■□□□□ 0.24
TCOF1-201ENST00000323668 BPIFA3Q9BQP9 254 aa16.55■□□□□ 0.24
TCOF1-201ENST00000323668 CSRNP2Q9H175 543 aa16.55■□□□□ 0.24
TCOF1-201ENST00000323668 BTG4Q9NY30 223 aa16.55■□□□□ 0.24
TCOF1-201ENST00000323668 AK9Q5TCS8 1911 aa16.55■□□□□ 0.24
TCOF1-201ENST00000323668 CYP27B1O15528 508 aa16.55■□□□□ 0.24
TCOF1-201ENST00000323668 LIFRP42702 1097 aa16.55■□□□□ 0.24
TCOF1-201ENST00000323668 MAN1B1Q9UKM7 699 aa16.55■□□□□ 0.24
TCOF1-201ENST00000323668 MAP2P11137 1827 aaKnown RBP16.55■□□□□ 0.24
TCOF1-201ENST00000323668 EXOSC10Q01780 885 aaKnown RBP16.54■□□□□ 0.24
TCOF1-201ENST00000323668 ARID5AQ03989 594 aa16.54■□□□□ 0.24
TCOF1-201ENST00000323668 ZSCAN26Q16670 478 aa16.54■□□□□ 0.24
TCOF1-201ENST00000323668 MEX3CQ5U5Q3 659 aaKnown RBP16.54■□□□□ 0.24
TCOF1-201ENST00000323668 DHX40Q8IX18 779 aaKnown RBP16.54■□□□□ 0.24
TCOF1-201ENST00000323668 ZSWIM5Q9P217 1185 aa16.54■□□□□ 0.24
TCOF1-201ENST00000323668 CDC23Q9UJX2 597 aa16.54■□□□□ 0.24
TCOF1-201ENST00000323668 GOLGA6L7A0A1B0GV03 622 aa16.54■□□□□ 0.24
TCOF1-201ENST00000323668 SV2BQ7L1I2 683 aa16.54■□□□□ 0.24
TCOF1-201ENST00000323668 AFAP1L1Q8TED9 768 aa16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms