RNA–Protein interactions for RNA: ENST00000317840.9

COL3A1-202, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2 BASIC

Gene COL3A1, Length 3,873 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-202ENST00000317840 GOLGA1Q92805 767 aa11.96□□□□□ -0.49
COL3A1-202ENST00000317840 PCMTD1Q96MG8 357 aaPredicted RBP11.96□□□□□ -0.49
COL3A1-202ENST00000317840 STRBPQ96SI9 672 aaKnown RBP11.96□□□□□ -0.49
COL3A1-202ENST00000317840 CYP19A1P11511 503 aaPredicted RBP11.96□□□□□ -0.49
COL3A1-202ENST00000317840 ZNF174Q15697 407 aa11.96□□□□□ -0.49
COL3A1-202ENST00000317840 HSP90B2PQ58FF3 399 aa11.96□□□□□ -0.49
COL3A1-202ENST00000317840 TICAM2Q86XR7 235 aa11.96□□□□□ -0.49
COL3A1-202ENST00000317840 FOXP4Q8IVH2 680 aaPredicted RBP11.96□□□□□ -0.49
COL3A1-202ENST00000317840 IRX2Q9BZI1 471 aaPredicted RBP11.96□□□□□ -0.49
COL3A1-202ENST00000317840 LY9Q9HBG7 655 aa11.96□□□□□ -0.49
COL3A1-202ENST00000317840 VWA3AA6NCI4 1184 aa11.96□□□□□ -0.5
COL3A1-202ENST00000317840 FOXP2O15409 715 aa11.96□□□□□ -0.5
COL3A1-202ENST00000317840 TNNT3P45378 269 aaPredicted RBP11.96□□□□□ -0.5
COL3A1-202ENST00000317840 GYG1P46976 350 aa11.96□□□□□ -0.5
COL3A1-202ENST00000317840 SKIDA1Q1XH10 827 aa11.96□□□□□ -0.5
COL3A1-202ENST00000317840 MARCH10Q8NA82 808 aaPredicted RBP11.96□□□□□ -0.5
COL3A1-202ENST00000317840 LPIN2Q92539 896 aa11.96□□□□□ -0.5
COL3A1-202ENST00000317840 ZFP91Q96JP5 570 aaPredicted RBP11.96□□□□□ -0.5
COL3A1-202ENST00000317840 CSRNP2Q9H175 543 aa11.96□□□□□ -0.5
COL3A1-202ENST00000317840 ZCCHC17Q9NP64 241 aaKnown RBP11.96□□□□□ -0.5
COL3A1-202ENST00000317840 MAPK8IP1Q9UQF2 711 aa11.96□□□□□ -0.5
COL3A1-202ENST00000317840 KDM3BQ7LBC6 1761 aa11.96□□□□□ -0.5
COL3A1-202ENST00000317840 STX10O60499 249 aa11.95□□□□□ -0.5
COL3A1-202ENST00000317840 LMAN1P49257 510 aa11.95□□□□□ -0.5
COL3A1-202ENST00000317840 FMR1Q06787 632 aaKnown RBP eCLIP11.95□□□□□ -0.5
COL3A1-202ENST00000317840 PTPAQ15257 358 aa11.95□□□□□ -0.5
COL3A1-202ENST00000317840 NEK11Q8NG66 645 aa11.95□□□□□ -0.5
COL3A1-202ENST00000317840 ZNF446Q9NWS9 450 aa11.95□□□□□ -0.5
COL3A1-202ENST00000317840 V9GY48 417 aaPredicted RBP11.95□□□□□ -0.5
COL3A1-202ENST00000317840 MMP1P03956 469 aa11.95□□□□□ -0.5
COL3A1-202ENST00000317840 RHOXF2BP0C7M4 288 aa11.95□□□□□ -0.5
COL3A1-202ENST00000317840 USP49Q70CQ1 688 aa11.95□□□□□ -0.5
COL3A1-202ENST00000317840 SDR42E1Q8WUS8 393 aa11.95□□□□□ -0.5
COL3A1-202ENST00000317840 CCDC102AQ96A19 550 aa11.95□□□□□ -0.5
COL3A1-202ENST00000317840 RHOXF2Q9BQY4 288 aa11.95□□□□□ -0.5
COL3A1-202ENST00000317840 RIPOR2Q9Y4F9 1068 aa11.95□□□□□ -0.5
COL3A1-202ENST00000317840 SOWAHDA6NJG2 315 aa11.95□□□□□ -0.5
COL3A1-202ENST00000317840 OAS2P29728 719 aaKnown RBP11.95□□□□□ -0.5
COL3A1-202ENST00000317840 MTF1Q14872 753 aa11.95□□□□□ -0.5
COL3A1-202ENST00000317840 RRAGBQ5VZM2 374 aa11.95□□□□□ -0.5
COL3A1-202ENST00000317840 CATIPQ7Z7H3 387 aa11.95□□□□□ -0.5
COL3A1-202ENST00000317840 IQCA1Q86XH1 822 aa11.95□□□□□ -0.5
COL3A1-202ENST00000317840 ZNF654Q8IZM8 581 aa11.95□□□□□ -0.5
COL3A1-202ENST00000317840 TMTC2Q8N394 836 aa11.95□□□□□ -0.5
COL3A1-202ENST00000317840 IGDCC4Q8TDY8 1250 aa11.95□□□□□ -0.5
COL3A1-202ENST00000317840 ESR2Q92731 530 aa11.95□□□□□ -0.5
COL3A1-202ENST00000317840 CDCA7Q9BWT1 371 aaPredicted RBP11.95□□□□□ -0.5
COL3A1-202ENST00000317840 CPDO75976 1380 aa11.94□□□□□ -0.5
COL3A1-202ENST00000317840 IPO7O95373 1038 aaKnown RBP11.94□□□□□ -0.5
COL3A1-202ENST00000317840 FMNL1O95466 1100 aaPredicted RBP11.94□□□□□ -0.5
COL3A1-202ENST00000317840 IFNAR1P17181 557 aa11.94□□□□□ -0.5
COL3A1-202ENST00000317840 TPTE2Q6XPS3 522 aa11.94□□□□□ -0.5
COL3A1-202ENST00000317840 FANCBQ8NB91 859 aa11.94□□□□□ -0.5
COL3A1-202ENST00000317840 OXER1Q8TDS5 423 aa11.94□□□□□ -0.5
COL3A1-202ENST00000317840 RPGRQ92834 1020 aaKnown RBP11.94□□□□□ -0.5
COL3A1-202ENST00000317840 VPS16Q9H269 839 aa11.94□□□□□ -0.5
COL3A1-202ENST00000317840 F8W031 263 aaPredicted RBP11.94□□□□□ -0.5
COL3A1-202ENST00000317840 ERLIN1O75477 346 aa11.94□□□□□ -0.5
COL3A1-202ENST00000317840 CHMP4BP1P59074 171 aa11.94□□□□□ -0.5
COL3A1-202ENST00000317840 SMC1AQ14683 1233 aaKnown RBP11.94□□□□□ -0.5
COL3A1-202ENST00000317840 IFIT1BQ5T764 474 aaKnown RBP11.94□□□□□ -0.5
COL3A1-202ENST00000317840 GOLGA6L1Q8N7Z2 621 aa11.94□□□□□ -0.5
COL3A1-202ENST00000317840 EPSTI1Q96J88 318 aa11.94□□□□□ -0.5
COL3A1-202ENST00000317840 HPSEQ9Y251 543 aa11.94□□□□□ -0.5
COL3A1-202ENST00000317840 H2AFXP16104 143 aaPredicted RBP11.94□□□□□ -0.5
COL3A1-202ENST00000317840 IL6STP40189 918 aaPredicted RBP11.94□□□□□ -0.5
COL3A1-202ENST00000317840 ATP2B2Q01814 1243 aa11.94□□□□□ -0.5
COL3A1-202ENST00000317840 RASGRF1Q13972 1273 aa11.94□□□□□ -0.5
COL3A1-202ENST00000317840 FBXL16Q8N461 479 aa11.94□□□□□ -0.5
COL3A1-202ENST00000317840 GPR161Q8N6U8 529 aaKnown RBP11.94□□□□□ -0.5
COL3A1-202ENST00000317840 BLZF1Q9H2G9 400 aa11.94□□□□□ -0.5
COL3A1-202ENST00000317840 PODXL2Q9NZ53 605 aa11.94□□□□□ -0.5
COL3A1-202ENST00000317840 SYNRGQ9UMZ2 1314 aa11.94□□□□□ -0.5
COL3A1-202ENST00000317840 TADA3O75528 432 aa11.93□□□□□ -0.5
COL3A1-202ENST00000317840 PTPREP23469 700 aa11.93□□□□□ -0.5
COL3A1-202ENST00000317840 LIFRP42702 1097 aa11.93□□□□□ -0.5
COL3A1-202ENST00000317840 KCNJ6P48051 423 aa11.93□□□□□ -0.5
COL3A1-202ENST00000317840 NLRP5P59047 1200 aa11.93□□□□□ -0.5
COL3A1-202ENST00000317840 LCORLQ8N3X6 602 aa11.93□□□□□ -0.5
COL3A1-202ENST00000317840 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.93□□□□□ -0.5
COL3A1-202ENST00000317840 PHACTR2O75167 634 aa11.93□□□□□ -0.5
COL3A1-202ENST00000317840 DZIP1Q86YF9 867 aaKnown RBP11.93□□□□□ -0.5
COL3A1-202ENST00000317840 REXO1L1PQ8IX06 675 aa11.93□□□□□ -0.5
COL3A1-202ENST00000317840 NKX2-3Q8TAU0 364 aa11.93□□□□□ -0.5
COL3A1-202ENST00000317840 ENOX1Q8TC92 643 aaKnown RBP11.93□□□□□ -0.5
COL3A1-202ENST00000317840 PARP3Q9Y6F1 533 aa11.93□□□□□ -0.5
COL3A1-202ENST00000317840 TEX33O43247 280 aa11.93□□□□□ -0.5
COL3A1-202ENST00000317840 KRT2P35908 639 aa11.93□□□□□ -0.5
COL3A1-202ENST00000317840 TXLNAP40222 546 aa11.93□□□□□ -0.5
COL3A1-202ENST00000317840 TRAPPC3LQ5T215 181 aa11.93□□□□□ -0.5
COL3A1-202ENST00000317840 FCHSD1Q86WN1 690 aa11.93□□□□□ -0.5
COL3A1-202ENST00000317840 CTCFLQ8NI51 663 aaPredicted RBP11.93□□□□□ -0.5
COL3A1-202ENST00000317840 MAP3K14Q99558 947 aa11.93□□□□□ -0.5
COL3A1-202ENST00000317840 PARD6BQ9BYG5 372 aa11.93□□□□□ -0.5
COL3A1-202ENST00000317840 CTNND2Q9UQB3 1225 aa11.93□□□□□ -0.5
COL3A1-202ENST00000317840 MYO1BO43795 1136 aa11.92□□□□□ -0.5
COL3A1-202ENST00000317840 ERFEQ4G0M1 354 aa11.92□□□□□ -0.5
COL3A1-202ENST00000317840 NBPF3Q9H094 633 aa11.92□□□□□ -0.5
COL3A1-202ENST00000317840 FHOD1Q9Y613 1164 aa11.92□□□□□ -0.5
COL3A1-202ENST00000317840 WDR19Q8NEZ3 1342 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms