RNA–Protein interactions for RNA: ENST00000302528.11

CLIP1-201, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 5 BASIC

Gene CLIP1, Length 5,833 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-201ENST00000302528 ANO3Q9BYT9 981 aa11.5□□□□□ -0.57
CLIP1-201ENST00000302528 GPCPD1Q9NPB8 672 aa11.5□□□□□ -0.57
CLIP1-201ENST00000302528 NPHP3Q7Z494 1330 aa11.5□□□□□ -0.57
CLIP1-201ENST00000302528 PALM3A6NDB9 673 aaPredicted RBP11.49□□□□□ -0.57
CLIP1-201ENST00000302528 KIF11P52732 1056 aa11.49□□□□□ -0.57
CLIP1-201ENST00000302528 EP400NLQ6ZTU2 488 aa11.49□□□□□ -0.57
CLIP1-201ENST00000302528 PPFIA4O75335 1185 aa11.49□□□□□ -0.57
CLIP1-201ENST00000302528 TSTA3Q13630 321 aaPredicted RBP11.49□□□□□ -0.57
CLIP1-201ENST00000302528 KRT71Q3SY84 523 aa11.49□□□□□ -0.57
CLIP1-201ENST00000302528 SCYL1Q96KG9 808 aa11.49□□□□□ -0.57
CLIP1-201ENST00000302528 AZI2Q9H6S1 392 aa11.49□□□□□ -0.57
CLIP1-201ENST00000302528 RALGAPBQ86X10 1494 aa11.49□□□□□ -0.57
CLIP1-201ENST00000302528 MYCLP12524 364 aaPredicted RBP11.49□□□□□ -0.57
CLIP1-201ENST00000302528 GCKP35557 465 aa11.49□□□□□ -0.57
CLIP1-201ENST00000302528 XAGE3Q8WTP9 111 aa11.49□□□□□ -0.57
CLIP1-201ENST00000302528 RSAD2Q8WXG1 361 aa11.49□□□□□ -0.57
CLIP1-201ENST00000302528 KRT12Q99456 494 aa11.49□□□□□ -0.57
CLIP1-201ENST00000302528 MYO1AQ9UBC5 1043 aa11.49□□□□□ -0.57
CLIP1-201ENST00000302528 ARHGEF11O15085 1522 aa11.49□□□□□ -0.57
CLIP1-201ENST00000302528 DNM2P50570 870 aa11.49□□□□□ -0.57
CLIP1-201ENST00000302528 PPFIA1Q13136 1202 aa11.49□□□□□ -0.57
CLIP1-201ENST00000302528 NUP58Q9BVL2 599 aa11.49□□□□□ -0.57
CLIP1-201ENST00000302528 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.49□□□□□ -0.57
CLIP1-201ENST00000302528 CD2APQ9Y5K6 639 aa11.49□□□□□ -0.57
CLIP1-201ENST00000302528 PARP3Q9Y6F1 533 aa11.49□□□□□ -0.57
CLIP1-201ENST00000302528 TTC21BQ7Z4L5 1316 aa11.49□□□□□ -0.57
CLIP1-201ENST00000302528 PFDN6O15212 129 aa11.48□□□□□ -0.57
CLIP1-201ENST00000302528 SKA2Q8WVK7 121 aaPredicted RBP11.48□□□□□ -0.57
CLIP1-201ENST00000302528 ZMAT2Q96NC0 199 aaKnown RBP11.48□□□□□ -0.57
CLIP1-201ENST00000302528 PLB1Q6P1J6 1458 aa11.48□□□□□ -0.57
CLIP1-201ENST00000302528 CCDC141Q6ZP82 1450 aa11.48□□□□□ -0.57
CLIP1-201ENST00000302528 BCRP11274 1271 aa11.48□□□□□ -0.57
CLIP1-201ENST00000302528 PDE1AP54750 535 aa11.48□□□□□ -0.57
CLIP1-201ENST00000302528 CCDC68Q9H2F9 335 aa11.48□□□□□ -0.57
CLIP1-201ENST00000302528 PARP2Q9UGN5 583 aa11.48□□□□□ -0.57
CLIP1-201ENST00000302528 MAGI1Q96QZ7 1491 aaPredicted RBP11.48□□□□□ -0.57
CLIP1-201ENST00000302528 A0A1B0GVL5 298 aa11.48□□□□□ -0.57
CLIP1-201ENST00000302528 CCNT1O60563 726 aaKnown RBP11.48□□□□□ -0.57
CLIP1-201ENST00000302528 HIP1RO75146 1068 aa11.48□□□□□ -0.57
CLIP1-201ENST00000302528 ITKQ08881 620 aa11.48□□□□□ -0.57
CLIP1-201ENST00000302528 RPS6KA1Q15418 735 aa11.48□□□□□ -0.57
CLIP1-201ENST00000302528 NCAPH2Q6IBW4 605 aa11.48□□□□□ -0.57
CLIP1-201ENST00000302528 UBE2Q2Q8WVN8 375 aa11.48□□□□□ -0.57
CLIP1-201ENST00000302528 ACSBG1Q96GR2 724 aa11.48□□□□□ -0.57
CLIP1-201ENST00000302528 KLHL14Q9P2G3 628 aa11.48□□□□□ -0.57
CLIP1-201ENST00000302528 MAGEA1P43355 309 aa11.48□□□□□ -0.57
CLIP1-201ENST00000302528 PEX26Q7Z412 305 aa11.48□□□□□ -0.57
CLIP1-201ENST00000302528 PSMB7Q99436 277 aa11.48□□□□□ -0.57
CLIP1-201ENST00000302528 MBIPQ9NS73 344 aa11.48□□□□□ -0.57
CLIP1-201ENST00000302528 TPX2Q9ULW0 747 aaKnown RBP11.48□□□□□ -0.57
CLIP1-201ENST00000302528 MAPK8IP1Q9UQF2 711 aa11.48□□□□□ -0.57
CLIP1-201ENST00000302528 EXOC3O60645 756 aa11.48□□□□□ -0.57
CLIP1-201ENST00000302528 FLOT1O75955 427 aa11.48□□□□□ -0.57
CLIP1-201ENST00000302528 TTC4O95801 387 aa11.48□□□□□ -0.57
CLIP1-201ENST00000302528 CFAP221Q4G0U5 840 aa11.48□□□□□ -0.57
CLIP1-201ENST00000302528 KRT28Q7Z3Y7 464 aa11.48□□□□□ -0.57
CLIP1-201ENST00000302528 HDAC11Q96DB2 347 aa11.48□□□□□ -0.57
CLIP1-201ENST00000302528 LRGUKQ96M69 825 aa11.48□□□□□ -0.57
CLIP1-201ENST00000302528 CARD6Q9BX69 1037 aa11.48□□□□□ -0.57
CLIP1-201ENST00000302528 CHPF2Q9P2E5 772 aa11.48□□□□□ -0.57
CLIP1-201ENST00000302528 DDX39AO00148 427 aaKnown RBP11.47□□□□□ -0.57
CLIP1-201ENST00000302528 RGS16O15492 202 aaPredicted RBP11.47□□□□□ -0.57
CLIP1-201ENST00000302528 APOEP02649 317 aa11.47□□□□□ -0.57
CLIP1-201ENST00000302528 PHBP35232 272 aa11.47□□□□□ -0.57
CLIP1-201ENST00000302528 CASP2P42575 452 aa11.47□□□□□ -0.57
CLIP1-201ENST00000302528 SND1Q7KZF4 910 aaKnown RBP eCLIP11.47□□□□□ -0.57
CLIP1-201ENST00000302528 COPS6Q7L5N1 327 aa11.47□□□□□ -0.57
CLIP1-201ENST00000302528 HACE1Q8IYU2 909 aa11.47□□□□□ -0.57
CLIP1-201ENST00000302528 CFAP61Q8NHU2 1237 aa11.47□□□□□ -0.57
CLIP1-201ENST00000302528 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.47□□□□□ -0.57
CLIP1-201ENST00000302528 P4HA1P13674 534 aa11.47□□□□□ -0.57
CLIP1-201ENST00000302528 RAD51AP2Q09MP3 1159 aa11.47□□□□□ -0.57
CLIP1-201ENST00000302528 MMEL1Q495T6 779 aa11.47□□□□□ -0.57
CLIP1-201ENST00000302528 TPTE2Q6XPS3 522 aa11.47□□□□□ -0.57
CLIP1-201ENST00000302528 TRIM50Q86XT4 487 aa11.47□□□□□ -0.57
CLIP1-201ENST00000302528 ZNF408Q9H9D4 720 aa11.47□□□□□ -0.57
CLIP1-201ENST00000302528 ARHGEF10LQ9HCE6 1279 aa11.47□□□□□ -0.57
CLIP1-201ENST00000302528 TSKSQ9UJT2 592 aa11.47□□□□□ -0.57
CLIP1-201ENST00000302528 PPP1R9AQ9ULJ8 1098 aa11.47□□□□□ -0.57
CLIP1-201ENST00000302528 SYNRGQ9UMZ2 1314 aa11.47□□□□□ -0.57
CLIP1-201ENST00000302528 TXKP42681 527 aa11.47□□□□□ -0.57
CLIP1-201ENST00000302528 KRT81Q14533 505 aa11.47□□□□□ -0.57
CLIP1-201ENST00000302528 LARP7Q4G0J3 582 aaKnown RBP eCLIP11.47□□□□□ -0.57
CLIP1-201ENST00000302528 RAB17Q9H0T7 212 aa11.47□□□□□ -0.57
CLIP1-201ENST00000302528 SPC25Q9HBM1 224 aa11.47□□□□□ -0.57
CLIP1-201ENST00000302528 GRM8O00222 908 aa11.47□□□□□ -0.57
CLIP1-201ENST00000302528 KLHL30Q0D2K2 578 aa11.47□□□□□ -0.57
CLIP1-201ENST00000302528 LONRF3Q496Y0 759 aa11.47□□□□□ -0.57
CLIP1-201ENST00000302528 STAG1Q8WVM7 1258 aa11.47□□□□□ -0.57
CLIP1-201ENST00000302528 SAP30BPQ9UHR5 308 aaKnown RBP11.47□□□□□ -0.57
CLIP1-201ENST00000302528 STK24Q9Y6E0 443 aa11.47□□□□□ -0.57
CLIP1-201ENST00000302528 ABL1P00519 1130 aa11.47□□□□□ -0.57
CLIP1-201ENST00000302528 MAP2K2P36507 400 aa11.47□□□□□ -0.57
CLIP1-201ENST00000302528 NUCB1Q02818 461 aa11.47□□□□□ -0.57
CLIP1-201ENST00000302528 DHX32Q7L7V1 743 aaKnown RBP11.47□□□□□ -0.57
CLIP1-201ENST00000302528 RIC8AQ9NPQ8 531 aa11.47□□□□□ -0.57
CLIP1-201ENST00000302528 ST7Q9NRC1 585 aa11.47□□□□□ -0.57
CLIP1-201ENST00000302528 GJA3Q9Y6H8 435 aa11.47□□□□□ -0.57
CLIP1-201ENST00000302528 SERPINB6P35237 376 aa11.46□□□□□ -0.57
CLIP1-201ENST00000302528 YARSP54577 528 aaKnown RBP11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms