RNA–Protein interactions for RNA: ENST00000258733.8

GPNMB-201, Transcript of glycoprotein nmb, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene GPNMB, Length 2,862 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-201ENST00000258733 BRAPQ7Z569 592 aa8.69□□□□□ -1.02
GPNMB-201ENST00000258733 C11orf74Q86VG3 221 aa8.69□□□□□ -1.02
GPNMB-201ENST00000258733 CERKQ8TCT0 537 aa8.69□□□□□ -1.02
GPNMB-201ENST00000258733 ATP6V0A1Q93050 837 aa8.69□□□□□ -1.02
GPNMB-201ENST00000258733 LRRC45Q96CN5 670 aa8.69□□□□□ -1.02
GPNMB-201ENST00000258733 SPATA17Q96L03 361 aa8.69□□□□□ -1.02
GPNMB-201ENST00000258733 NEK1Q96PY6 1258 aa8.69□□□□□ -1.02
GPNMB-201ENST00000258733 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.69□□□□□ -1.02
GPNMB-201ENST00000258733 PCSK1NQ9UHG2 260 aa8.69□□□□□ -1.02
GPNMB-201ENST00000258733 EFR3BQ9Y2G0 817 aa8.69□□□□□ -1.02
GPNMB-201ENST00000258733 MAGI3Q5TCQ9 1506 aa8.69□□□□□ -1.02
GPNMB-201ENST00000258733 IQSEC2Q5JU85 1478 aa8.69□□□□□ -1.02
GPNMB-201ENST00000258733 NAIPQ13075 1403 aa8.69□□□□□ -1.02
GPNMB-201ENST00000258733 ADCY10Q96PN6 1610 aa8.69□□□□□ -1.02
GPNMB-201ENST00000258733 GOLGA6L10A0A0M3HER8 536 aa8.68□□□□□ -1.02
GPNMB-201ENST00000258733 TARSL2A2RTX5 802 aaKnown RBP8.68□□□□□ -1.02
GPNMB-201ENST00000258733 MGEA5O60502 916 aa8.68□□□□□ -1.02
GPNMB-201ENST00000258733 SMIM24O75264 130 aa8.68□□□□□ -1.02
GPNMB-201ENST00000258733 FSBPO95073 299 aa8.68□□□□□ -1.02
GPNMB-201ENST00000258733 TROVE2P10155 538 aaKnown RBP eCLIP8.68□□□□□ -1.02
GPNMB-201ENST00000258733 SUZ12Q15022 739 aaKnown RBP8.68□□□□□ -1.02
GPNMB-201ENST00000258733 INAQ16352 499 aa8.68□□□□□ -1.02
GPNMB-201ENST00000258733 NUGGCQ68CJ6 796 aa8.68□□□□□ -1.02
GPNMB-201ENST00000258733 PI16Q6UXB8 463 aa8.68□□□□□ -1.02
GPNMB-201ENST00000258733 TRIM50Q86XT4 487 aa8.68□□□□□ -1.02
GPNMB-201ENST00000258733 LINC00469Q8N7U9 141 aa8.68□□□□□ -1.02
GPNMB-201ENST00000258733 TBC1D31Q96DN5 1066 aa8.68□□□□□ -1.02
GPNMB-201ENST00000258733 C1orf74Q96LT6 269 aa8.68□□□□□ -1.02
GPNMB-201ENST00000258733 RNPC3Q96LT9 517 aaKnown RBP8.68□□□□□ -1.02
GPNMB-201ENST00000258733 MRGBPQ9NV56 204 aa8.68□□□□□ -1.02
GPNMB-201ENST00000258733 SEPT10Q9P0V9 454 aa8.68□□□□□ -1.02
GPNMB-201ENST00000258733 TRPC6Q9Y210 931 aa8.68□□□□□ -1.02
GPNMB-201ENST00000258733 DENND4BO75064 1496 aaPredicted RBP8.68□□□□□ -1.02
GPNMB-201ENST00000258733 PTPRGP23470 1445 aa8.68□□□□□ -1.02
GPNMB-201ENST00000258733 KIAA0586Q9BVV6 1533 aa8.68□□□□□ -1.02
GPNMB-201ENST00000258733 SMTNP53814 917 aa8.68□□□□□ -1.02
GPNMB-201ENST00000258733 CDK17Q00537 523 aa8.68□□□□□ -1.02
GPNMB-201ENST00000258733 ITGA7Q13683 1181 aa8.68□□□□□ -1.02
GPNMB-201ENST00000258733 GPR162Q16538 588 aa8.68□□□□□ -1.02
GPNMB-201ENST00000258733 TMEM53Q6P2H8 277 aa8.68□□□□□ -1.02
GPNMB-201ENST00000258733 CCDC50Q8IVM0 306 aa8.68□□□□□ -1.02
GPNMB-201ENST00000258733 FRS2Q8WU20 508 aa8.68□□□□□ -1.02
GPNMB-201ENST00000258733 SNX27Q96L92 541 aa8.68□□□□□ -1.02
GPNMB-201ENST00000258733 SPAG5Q96R06 1193 aa8.68□□□□□ -1.02
GPNMB-201ENST00000258733 ABCF3Q9NUQ8 709 aa8.68□□□□□ -1.02
GPNMB-201ENST00000258733 ORC3Q9UBD5 711 aaPredicted RBP8.68□□□□□ -1.02
GPNMB-201ENST00000258733 PTPRKQ15262 1439 aa8.68□□□□□ -1.02
GPNMB-201ENST00000258733 GRIN2AQ12879 1464 aa8.68□□□□□ -1.02
GPNMB-201ENST00000258733 CHL1O00533 1208 aa8.67□□□□□ -1.02
GPNMB-201ENST00000258733 SRGAP3O43295 1099 aa8.67□□□□□ -1.02
GPNMB-201ENST00000258733 SLC8A1P32418 973 aa8.67□□□□□ -1.02
GPNMB-201ENST00000258733 S100A5P33763 92 aa8.67□□□□□ -1.02
GPNMB-201ENST00000258733 SLC16A2P36021 539 aa8.67□□□□□ -1.02
GPNMB-201ENST00000258733 PTPN14Q15678 1187 aa8.67□□□□□ -1.02
GPNMB-201ENST00000258733 SNCBQ16143 134 aa8.67□□□□□ -1.02
GPNMB-201ENST00000258733 PPP1R15BQ5SWA1 713 aa8.67□□□□□ -1.02
GPNMB-201ENST00000258733 CCDC122Q5T0U0 273 aa8.67□□□□□ -1.02
GPNMB-201ENST00000258733 LARGE2Q8N3Y3 721 aa8.67□□□□□ -1.02
GPNMB-201ENST00000258733 MAELQ96JY0 434 aaKnown RBP8.67□□□□□ -1.02
GPNMB-201ENST00000258733 HAUS7Q99871 368 aa8.67□□□□□ -1.02
GPNMB-201ENST00000258733 FUT8Q9BYC5 575 aa8.67□□□□□ -1.02
GPNMB-201ENST00000258733 FRMD4AQ9P2Q2 1039 aaPredicted RBP8.67□□□□□ -1.02
GPNMB-201ENST00000258733 CCDC171Q6TFL3 1326 aa8.67□□□□□ -1.02
GPNMB-201ENST00000258733 PALM3A6NDB9 673 aaPredicted RBP8.67□□□□□ -1.02
GPNMB-201ENST00000258733 TTI1O43156 1089 aa8.67□□□□□ -1.02
GPNMB-201ENST00000258733 ZSCAN12O43309 604 aa8.67□□□□□ -1.02
GPNMB-201ENST00000258733 TMCC1O94876 653 aa8.67□□□□□ -1.02
GPNMB-201ENST00000258733 MYCP01106 439 aaPredicted RBP8.67□□□□□ -1.02
GPNMB-201ENST00000258733 LINGO3P0C6S8 592 aa8.67□□□□□ -1.02
GPNMB-201ENST00000258733 RBP3P10745 1247 aa8.67□□□□□ -1.02
GPNMB-201ENST00000258733 GNAQP50148 359 aa8.67□□□□□ -1.02
GPNMB-201ENST00000258733 PMS2P54278 862 aa8.67□□□□□ -1.02
GPNMB-201ENST00000258733 ZBTB17Q13105 803 aa8.67□□□□□ -1.02
GPNMB-201ENST00000258733 BOLA3Q53S33 107 aa8.67□□□□□ -1.02
GPNMB-201ENST00000258733 BEND6Q5SZJ8 279 aaPredicted RBP8.67□□□□□ -1.02
GPNMB-201ENST00000258733 OSTM1Q86WC4 334 aa8.67□□□□□ -1.02
GPNMB-201ENST00000258733 TNIP2Q8NFZ5 429 aa8.67□□□□□ -1.02
GPNMB-201ENST00000258733 RABGGTAQ92696 567 aa8.67□□□□□ -1.02
GPNMB-201ENST00000258733 DNAI2Q9GZS0 605 aa8.67□□□□□ -1.02
GPNMB-201ENST00000258733 HESX1Q9UBX0 185 aa8.67□□□□□ -1.02
GPNMB-201ENST00000258733 DDX25Q9UHL0 483 aaKnown RBP8.67□□□□□ -1.02
GPNMB-201ENST00000258733 XPO7Q9UIA9 1087 aaKnown RBP8.67□□□□□ -1.02
GPNMB-201ENST00000258733 ATP1B4Q9UN42 357 aaPredicted RBP8.67□□□□□ -1.02
GPNMB-201ENST00000258733 LUC7L2Q9Y383 392 aaKnown RBP8.67□□□□□ -1.02
GPNMB-201ENST00000258733 ADAMTSL3P82987 1691 aa8.67□□□□□ -1.02
GPNMB-201ENST00000258733 IQCA1LA6NCM1 817 aa8.67□□□□□ -1.02
GPNMB-201ENST00000258733 LIN7AO14910 233 aaPredicted RBP8.67□□□□□ -1.02
GPNMB-201ENST00000258733 PENKP01210 267 aaPredicted RBP8.67□□□□□ -1.02
GPNMB-201ENST00000258733 PTGS1P23219 599 aa8.67□□□□□ -1.02
GPNMB-201ENST00000258733 MLH1P40692 756 aa8.67□□□□□ -1.02
GPNMB-201ENST00000258733 MAP7Q14244 749 aa8.67□□□□□ -1.02
GPNMB-201ENST00000258733 TTC39BQ5VTQ0 682 aaPredicted RBP8.67□□□□□ -1.02
GPNMB-201ENST00000258733 ADALQ6DHV7 355 aa8.67□□□□□ -1.02
GPNMB-201ENST00000258733 CLIC6Q96NY7 704 aa8.67□□□□□ -1.02
GPNMB-201ENST00000258733 VPS33BQ9H267 617 aa8.67□□□□□ -1.02
GPNMB-201ENST00000258733 FOXD4L1Q9NU39 408 aa8.67□□□□□ -1.02
GPNMB-201ENST00000258733 ATXN10Q9UBB4 475 aa8.67□□□□□ -1.02
GPNMB-201ENST00000258733 TPCN1Q9ULQ1 816 aa8.67□□□□□ -1.02
GPNMB-201ENST00000258733 R3HDM2Q9Y2K5 976 aaKnown RBP8.67□□□□□ -1.02
GPNMB-201ENST00000258733 PLEKHG3A1L390 1219 aa8.66□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms