RNA–Protein interactions for RNA: ENST00000257290.9

PDGFRA-201, Transcript of platelet derived growth factor receptor alpha, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDGFRA, Length 6,576 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRA-201ENST00000257290 IFT88Q13099 833 aa7.5□□□□□ -1.21
PDGFRA-201ENST00000257290 ARMC3Q5W041 872 aa7.5□□□□□ -1.21
PDGFRA-201ENST00000257290 LMBR1Q8WVP7 490 aa7.5□□□□□ -1.21
PDGFRA-201ENST00000257290 HIC2Q96JB3 615 aa7.5□□□□□ -1.21
PDGFRA-201ENST00000257290 ARPC5LQ9BPX5 153 aa7.5□□□□□ -1.21
PDGFRA-201ENST00000257290 PLEKHA4Q9H4M7 779 aa7.5□□□□□ -1.21
PDGFRA-201ENST00000257290 AMOTL2Q9Y2J4 779 aa7.5□□□□□ -1.21
PDGFRA-201ENST00000257290 COL17A1Q9UMD9 1497 aaPredicted RBP7.5□□□□□ -1.21
PDGFRA-201ENST00000257290 E7EVH7 732 aa7.5□□□□□ -1.21
PDGFRA-201ENST00000257290 ALDH3A1P30838 453 aa7.5□□□□□ -1.21
PDGFRA-201ENST00000257290 DRP2Q13474 957 aa7.5□□□□□ -1.21
PDGFRA-201ENST00000257290 LONRF2Q1L5Z9 754 aa7.5□□□□□ -1.21
PDGFRA-201ENST00000257290 SNRNP27Q8WVK2 155 aaKnown RBP7.5□□□□□ -1.21
PDGFRA-201ENST00000257290 CLMNQ96JQ2 1002 aa7.5□□□□□ -1.21
PDGFRA-201ENST00000257290 TACC3Q9Y6A5 838 aa7.5□□□□□ -1.21
PDGFRA-201ENST00000257290 DDX58O95786 925 aaKnown RBP7.5□□□□□ -1.21
PDGFRA-201ENST00000257290 POTEIP0CG38 1075 aa7.5□□□□□ -1.21
PDGFRA-201ENST00000257290 CTCFP49711 727 aaPredicted RBP7.5□□□□□ -1.21
PDGFRA-201ENST00000257290 EIF2B5Q13144 721 aaKnown RBP7.5□□□□□ -1.21
PDGFRA-201ENST00000257290 MPP3Q13368 585 aa7.5□□□□□ -1.21
PDGFRA-201ENST00000257290 RABGGTAQ92696 567 aa7.5□□□□□ -1.21
PDGFRA-201ENST00000257290 EVI5LQ96CN4 794 aa7.5□□□□□ -1.21
PDGFRA-201ENST00000257290 SHROOM2Q13796 1616 aa7.5□□□□□ -1.21
PDGFRA-201ENST00000257290 ERCC6L2Q5T890 1561 aa7.5□□□□□ -1.21
PDGFRA-201ENST00000257290 HECW2Q9P2P5 1572 aa7.5□□□□□ -1.21
PDGFRA-201ENST00000257290 TPPPO94811 219 aa7.5□□□□□ -1.21
PDGFRA-201ENST00000257290 SEC31AO94979 1220 aaKnown RBP7.5□□□□□ -1.21
PDGFRA-201ENST00000257290 TNIP1Q15025 636 aa7.5□□□□□ -1.21
PDGFRA-201ENST00000257290 JARID2Q92833 1246 aaPredicted RBP7.5□□□□□ -1.21
PDGFRA-201ENST00000257290 CCSER2Q9H7U1 834 aa7.5□□□□□ -1.21
PDGFRA-201ENST00000257290 HDAC9Q9UKV0 1011 aa7.5□□□□□ -1.21
PDGFRA-201ENST00000257290 MAGI2Q86UL8 1455 aa7.5□□□□□ -1.21
PDGFRA-201ENST00000257290 CTAGE9A4FU28 777 aa7.49□□□□□ -1.21
PDGFRA-201ENST00000257290 MCF2LO15068 1137 aa7.49□□□□□ -1.21
PDGFRA-201ENST00000257290 CCDC184Q52MB2 194 aa7.49□□□□□ -1.21
PDGFRA-201ENST00000257290 KCNH5Q8NCM2 988 aa7.49□□□□□ -1.21
PDGFRA-201ENST00000257290 GORASP1Q9BQQ3 440 aa7.49□□□□□ -1.21
PDGFRA-201ENST00000257290 CCDC113Q9H0I3 377 aa7.49□□□□□ -1.21
PDGFRA-201ENST00000257290 ERICH2A1L162 156 aa7.49□□□□□ -1.21
PDGFRA-201ENST00000257290 CCDC151A5D8V7 595 aa7.49□□□□□ -1.21
PDGFRA-201ENST00000257290 CD151P48509 253 aa7.49□□□□□ -1.21
PDGFRA-201ENST00000257290 CYLC2Q14093 348 aaPredicted RBP7.49□□□□□ -1.21
PDGFRA-201ENST00000257290 KCNB1Q14721 858 aa7.49□□□□□ -1.21
PDGFRA-201ENST00000257290 TUBA3EQ6PEY2 450 aa7.49□□□□□ -1.21
PDGFRA-201ENST00000257290 ST13P4Q8IZP2 240 aaPredicted RBP7.49□□□□□ -1.21
PDGFRA-201ENST00000257290 FAM167BQ9BTA0 163 aa7.49□□□□□ -1.21
PDGFRA-201ENST00000257290 PHACTR1Q9C0D0 580 aa7.49□□□□□ -1.21
PDGFRA-201ENST00000257290 TFIP11Q9UBB9 837 aaKnown RBP7.49□□□□□ -1.21
PDGFRA-201ENST00000257290 ZNF330Q9Y3S2 320 aaPredicted RBP7.49□□□□□ -1.21
PDGFRA-201ENST00000257290 TRPM2O94759 1503 aa7.49□□□□□ -1.21
PDGFRA-201ENST00000257290 ZMYM3Q14202 1370 aa7.49□□□□□ -1.21
PDGFRA-201ENST00000257290 ABCC11Q96J66 1382 aa7.49□□□□□ -1.21
PDGFRA-201ENST00000257290 CCNHP51946 323 aaPredicted RBP7.49□□□□□ -1.21
PDGFRA-201ENST00000257290 CAMK4Q16566 473 aa7.49□□□□□ -1.21
PDGFRA-201ENST00000257290 ZC3H12AQ5D1E8 599 aaKnown RBP7.49□□□□□ -1.21
PDGFRA-201ENST00000257290 HIBCHQ6NVY1 386 aaPredicted RBP7.49□□□□□ -1.21
PDGFRA-201ENST00000257290 SDR16C5Q8N3Y7 309 aa7.49□□□□□ -1.21
PDGFRA-201ENST00000257290 ENOX1Q8TC92 643 aaKnown RBP7.49□□□□□ -1.21
PDGFRA-201ENST00000257290 MAML3Q96JK9 1138 aa7.49□□□□□ -1.21
PDGFRA-201ENST00000257290 SKAP2O75563 359 aaPredicted RBP7.49□□□□□ -1.21
PDGFRA-201ENST00000257290 CNGA1P29973 690 aa7.49□□□□□ -1.21
PDGFRA-201ENST00000257290 CEBPAP49715 358 aaPredicted RBP7.49□□□□□ -1.21
PDGFRA-201ENST00000257290 TBL3Q12788 808 aaKnown RBP7.49□□□□□ -1.21
PDGFRA-201ENST00000257290 STX1AQ16623 288 aa7.49□□□□□ -1.21
PDGFRA-201ENST00000257290 CDCA7LQ96GN5 454 aa7.49□□□□□ -1.21
PDGFRA-201ENST00000257290 CDC5LQ99459 802 aaKnown RBP7.49□□□□□ -1.21
PDGFRA-201ENST00000257290 DACH1Q9UI36 760 aa7.49□□□□□ -1.21
PDGFRA-201ENST00000257290 KDM6BO15054 1643 aa7.49□□□□□ -1.21
PDGFRA-201ENST00000257290 DDHD2O94830 711 aa7.49□□□□□ -1.21
PDGFRA-201ENST00000257290 PIP4K2AP48426 406 aaPredicted RBP7.49□□□□□ -1.21
PDGFRA-201ENST00000257290 G3BP1Q13283 466 aaKnown RBP eCLIP7.49□□□□□ -1.21
PDGFRA-201ENST00000257290 KIAA2013Q8IYS2 634 aa7.49□□□□□ -1.21
PDGFRA-201ENST00000257290 DACT3Q96B18 629 aaPredicted RBP7.49□□□□□ -1.21
PDGFRA-201ENST00000257290 LNPKQ9C0E8 428 aa7.49□□□□□ -1.21
PDGFRA-201ENST00000257290 TPCN1Q9ULQ1 816 aa7.49□□□□□ -1.21
PDGFRA-201ENST00000257290 SAMM50Q9Y512 469 aa7.49□□□□□ -1.21
PDGFRA-201ENST00000257290 GMEB1Q9Y692 573 aa7.49□□□□□ -1.21
PDGFRA-201ENST00000257290 CROCC2H7BZ55 1655 aa7.49□□□□□ -1.21
PDGFRA-201ENST00000257290 SOS1Q07889 1333 aaPredicted RBP7.49□□□□□ -1.21
PDGFRA-201ENST00000257290 MYL1P05976 194 aa7.49□□□□□ -1.21
PDGFRA-201ENST00000257290 CETN1Q12798 172 aa7.49□□□□□ -1.21
PDGFRA-201ENST00000257290 CCSAPQ6IQ19 270 aaPredicted RBP7.49□□□□□ -1.21
PDGFRA-201ENST00000257290 PIAS4Q8N2W9 510 aaPredicted RBP7.49□□□□□ -1.21
PDGFRA-201ENST00000257290 KIF1BPQ96EK5 621 aa7.49□□□□□ -1.21
PDGFRA-201ENST00000257290 SH3GL2Q99962 352 aa7.49□□□□□ -1.21
PDGFRA-201ENST00000257290 SCHIP1Q9P0W5 487 aaPredicted RBP7.49□□□□□ -1.21
PDGFRA-201ENST00000257290 PYCARDQ9ULZ3 195 aa7.49□□□□□ -1.21
PDGFRA-201ENST00000257290 CDC42BPAQ5VT25 1732 aa7.48□□□□□ -1.21
PDGFRA-201ENST00000257290 NDC80O14777 642 aa7.48□□□□□ -1.21
PDGFRA-201ENST00000257290 RNF40O75150 1001 aa7.48□□□□□ -1.21
PDGFRA-201ENST00000257290 RTN3O95197 1032 aaPredicted RBP7.48□□□□□ -1.21
PDGFRA-201ENST00000257290 GIMAP6Q6P9H5 292 aa7.48□□□□□ -1.21
PDGFRA-201ENST00000257290 FBXO41Q8TF61 875 aa7.48□□□□□ -1.21
PDGFRA-201ENST00000257290 SPATA32Q96LK8 384 aa7.48□□□□□ -1.21
PDGFRA-201ENST00000257290 VCPKMTQ9H867 229 aa7.48□□□□□ -1.21
PDGFRA-201ENST00000257290 CD248Q9HCU0 757 aa7.48□□□□□ -1.21
PDGFRA-201ENST00000257290 BLOC1S6Q9UL45 172 aa7.48□□□□□ -1.21
PDGFRA-201ENST00000257290 CCDC15Q0P6D6 951 aa7.48□□□□□ -1.21
PDGFRA-201ENST00000257290 C20orf194Q5TEA3 1177 aa7.48□□□□□ -1.21
PDGFRA-201ENST00000257290 TNIP2Q8NFZ5 429 aa7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms