RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 CCDC152Q4G0S7 254 aa24.39■■□□□ 1.5
TRIM28-201ENST00000253024 AATFQ9NY61 560 aaKnown RBP eCLIP24.39■■□□□ 1.54e-7■■■■□ 19.6
TRIM28-201ENST00000253024 ABCC12Q96J65 1359 aa24.39■■□□□ 1.5
TRIM28-201ENST00000253024 DMTNQ08495 405 aa24.39■■□□□ 1.49
TRIM28-201ENST00000253024 ERFEQ4G0M1 354 aa24.39■■□□□ 1.49
TRIM28-201ENST00000253024 FAM182BQ5T319 152 aa24.39■■□□□ 1.49
TRIM28-201ENST00000253024 LZTFL1Q9NQ48 299 aa24.39■■□□□ 1.49
TRIM28-201ENST00000253024 CCDC87Q9NVE4 849 aa24.39■■□□□ 1.49
TRIM28-201ENST00000253024 DCCP43146 1447 aa24.39■■□□□ 1.49
TRIM28-201ENST00000253024 GNG11P61952 73 aa24.39■■□□□ 1.49
TRIM28-201ENST00000253024 ERICH4A6NGS2 130 aa24.38■■□□□ 1.49
TRIM28-201ENST00000253024 SEC31AO94979 1220 aaKnown RBP24.38■■□□□ 1.49
TRIM28-201ENST00000253024 TFRCP02786 760 aaKnown RBP24.38■■□□□ 1.49
TRIM28-201ENST00000253024 VSTM4Q8IW00 320 aa24.38■■□□□ 1.49
TRIM28-201ENST00000253024 ENAHQ8N8S7 591 aaPredicted RBP24.38■■□□□ 1.49
TRIM28-201ENST00000253024 WDR24Q96S15 920 aa24.38■■□□□ 1.49
TRIM28-201ENST00000253024 BPIFA3Q9BQP9 254 aa24.38■■□□□ 1.49
TRIM28-201ENST00000253024 USP17L12C9JPN9 530 aa24.38■■□□□ 1.49
TRIM28-201ENST00000253024 USP17L21D6R901 530 aa24.38■■□□□ 1.49
TRIM28-201ENST00000253024 ERO1AQ96HE7 468 aa24.38■■□□□ 1.49
TRIM28-201ENST00000253024 CCT6AP40227 531 aaKnown RBP24.37■■□□□ 1.49
TRIM28-201ENST00000253024 IFIT1BQ5T764 474 aaKnown RBP24.37■■□□□ 1.49
TRIM28-201ENST00000253024 CNNM2Q9H8M5 875 aa24.37■■□□□ 1.49
TRIM28-201ENST00000253024 SLIT2O94813 1529 aa24.37■■□□□ 1.49
TRIM28-201ENST00000253024 BCL9O00512 1426 aa24.37■■□□□ 1.49
TRIM28-201ENST00000253024 LOC102724428A0A0B4J2F2 783 aa24.37■■□□□ 1.49
TRIM28-201ENST00000253024 IKBKBO14920 756 aa24.37■■□□□ 1.49
TRIM28-201ENST00000253024 EIF5P55010 431 aaKnown RBP24.37■■□□□ 1.49
TRIM28-201ENST00000253024 SIK1P57059 783 aa24.37■■□□□ 1.49
TRIM28-201ENST00000253024 MNS1Q8NEH6 495 aa24.37■■□□□ 1.49
TRIM28-201ENST00000253024 RASGRP4Q8TDF6 673 aa24.37■■□□□ 1.49
TRIM28-201ENST00000253024 ZNF446Q9NWS9 450 aa24.37■■□□□ 1.49
TRIM28-201ENST00000253024 PARP4Q9UKK3 1724 aaKnown RBP24.37■■□□□ 1.49
TRIM28-201ENST00000253024 DEXIO95424 95 aa24.36■■□□□ 1.49
TRIM28-201ENST00000253024 UBR2Q8IWV8 1755 aa24.36■■□□□ 1.49
TRIM28-201ENST00000253024 ZNF397Q8NF99 534 aaPredicted RBP24.36■■□□□ 1.49
TRIM28-201ENST00000253024 SYMPKQ92797 1274 aaKnown RBP24.36■■□□□ 1.49
TRIM28-201ENST00000253024 CELF1Q92879 486 aaKnown RBP24.36■■□□□ 1.49
TRIM28-201ENST00000253024 OGFRQ9NZT2 677 aa24.36■■□□□ 1.49
TRIM28-201ENST00000253024 CD44P16070 742 aaKnown RBP24.36■■□□□ 1.49
TRIM28-201ENST00000253024 PTPREP23469 700 aa24.36■■□□□ 1.49
TRIM28-201ENST00000253024 PTF1AQ7RTS3 328 aa24.36■■□□□ 1.49
TRIM28-201ENST00000253024 BAG1Q99933 345 aaPredicted RBP24.36■■□□□ 1.49
TRIM28-201ENST00000253024 DDX41Q9UJV9 622 aaKnown RBP24.36■■□□□ 1.49
TRIM28-201ENST00000253024 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP24.36■■□□□ 1.491e-9■■■■□ 19.9
TRIM28-201ENST00000253024 SOWAHDA6NJG2 315 aa24.35■■□□□ 1.49
TRIM28-201ENST00000253024 MCM7P33993 719 aa24.35■■□□□ 1.49
TRIM28-201ENST00000253024 ETF1P62495 437 aaKnown RBP24.35■■□□□ 1.49
TRIM28-201ENST00000253024 STAG1Q8WVM7 1258 aa24.35■■□□□ 1.49
TRIM28-201ENST00000253024 TIGD1Q96MW7 591 aa24.35■■□□□ 1.49
TRIM28-201ENST00000253024 WDR19Q8NEZ3 1342 aa24.35■■□□□ 1.49
TRIM28-201ENST00000253024 PES1O00541 588 aaKnown RBP24.35■■□□□ 1.49
TRIM28-201ENST00000253024 MDM2Q00987 491 aaPredicted RBP24.35■■□□□ 1.49
TRIM28-201ENST00000253024 DDB1Q16531 1140 aa24.35■■□□□ 1.49
TRIM28-201ENST00000253024 GPIHBP1Q8IV16 184 aa24.35■■□□□ 1.49
TRIM28-201ENST00000253024 ZNF512BQ96KM6 892 aaPredicted RBP24.34■■□□□ 1.49
TRIM28-201ENST00000253024 EIF4ENIF1Q9NRA8 985 aaKnown RBP24.34■■□□□ 1.49
TRIM28-201ENST00000253024 PPP2R2CQ9Y2T4 447 aa24.34■■□□□ 1.49
TRIM28-201ENST00000253024 CAMTA2O94983 1202 aa24.34■■□□□ 1.49
TRIM28-201ENST00000253024 TEX35Q5T0J7 233 aa24.34■■□□□ 1.49
TRIM28-201ENST00000253024 PIK3AP1Q6ZUJ8 805 aa24.34■■□□□ 1.49
TRIM28-201ENST00000253024 ESR2Q92731 530 aa24.34■■□□□ 1.49
TRIM28-201ENST00000253024 CBFA2T2O43439 604 aa24.33■■□□□ 1.49
TRIM28-201ENST00000253024 RILPL1Q5EBL4 403 aa24.33■■□□□ 1.49
TRIM28-201ENST00000253024 WASF1Q92558 559 aa24.33■■□□□ 1.49
TRIM28-201ENST00000253024 REXO1L1PQ8IX06 675 aa24.33■■□□□ 1.49
TRIM28-201ENST00000253024 TRIM75PA6NK02 468 aa24.33■■□□□ 1.48
TRIM28-201ENST00000253024 PRDX5P30044 214 aa24.33■■□□□ 1.48
TRIM28-201ENST00000253024 ZNF384Q8TF68 577 aa24.33■■□□□ 1.48
TRIM28-201ENST00000253024 UBXN4Q92575 508 aa24.33■■□□□ 1.48
TRIM28-201ENST00000253024 GPKOWQ92917 476 aaPredicted RBP eCLIP24.33■■□□□ 1.48
TRIM28-201ENST00000253024 GPR101Q96P66 508 aaPredicted RBP24.33■■□□□ 1.48
TRIM28-201ENST00000253024 CPVLQ9H3G5 476 aa24.33■■□□□ 1.48
TRIM28-201ENST00000253024 C4AP0C0L4 1744 aa24.32■■□□□ 1.48
TRIM28-201ENST00000253024 C4BP0C0L5 1744 aa24.32■■□□□ 1.48
TRIM28-201ENST00000253024 MYH7P12883 1935 aa24.32■■□□□ 1.48
TRIM28-201ENST00000253024 TRIM65Q6PJ69 517 aa24.32■■□□□ 1.48
TRIM28-201ENST00000253024 RASGRP2Q7LDG7 609 aa24.32■■□□□ 1.48
TRIM28-201ENST00000253024 ERVV-1B6SEH8 477 aa24.32■■□□□ 1.48
TRIM28-201ENST00000253024 POLR3GO15318 223 aaPredicted RBP24.32■■□□□ 1.48
TRIM28-201ENST00000253024 CLCN6P51797 869 aa24.32■■□□□ 1.48
TRIM28-201ENST00000253024 ALX1Q15699 326 aa24.32■■□□□ 1.48
TRIM28-201ENST00000253024 ZSCAN10Q96SZ4 725 aaPredicted RBP24.32■■□□□ 1.48
TRIM28-201ENST00000253024 ACTN4O43707 911 aaKnown RBP24.31■■□□□ 1.48
TRIM28-201ENST00000253024 PKN1Q16512 942 aa24.31■■□□□ 1.48
TRIM28-201ENST00000253024 COL4A1P02462 1669 aa24.31■■□□□ 1.48
TRIM28-201ENST00000253024 NTSR2O95665 410 aa24.31■■□□□ 1.48
TRIM28-201ENST00000253024 ANKRD18AQ8IVF6 992 aa24.31■■□□□ 1.48
TRIM28-201ENST00000253024 TAF1P21675 1872 aa24.31■■□□□ 1.48
TRIM28-201ENST00000253024 CATIPQ7Z7H3 387 aa24.3■■□□□ 1.48
TRIM28-201ENST00000253024 TC2NQ8N9U0 490 aa24.3■■□□□ 1.48
TRIM28-201ENST00000253024 PSDA5PKW4 1024 aaPredicted RBP24.3■■□□□ 1.48
TRIM28-201ENST00000253024 PTGDRQ13258 359 aa24.3■■□□□ 1.48
TRIM28-201ENST00000253024 MARCH10Q8NA82 808 aaPredicted RBP24.3■■□□□ 1.48
TRIM28-201ENST00000253024 SRP68Q9UHB9 627 aaKnown RBP24.3■■□□□ 1.48
TRIM28-201ENST00000253024 CTNND2Q9UQB3 1225 aa24.3■■□□□ 1.48
TRIM28-201ENST00000253024 FEZ1Q99689 392 aa24.3■■□□□ 1.48
TRIM28-201ENST00000253024 HOOK1Q9UJC3 728 aaKnown RBP24.3■■□□□ 1.48
TRIM28-201ENST00000253024 DPYDQ12882 1025 aa24.29■■□□□ 1.48
TRIM28-201ENST00000253024 SPECC1LQ69YQ0 1117 aa24.29■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms