RNA–Protein interactions for RNA: ENST00000216456.6

VTI1B-201, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 1 (best)

Gene VTI1B, Length 1,103 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-201ENST00000216456 SLC34A2O95436 690 aa26.92■■□□□ 1.9
VTI1B-201ENST00000216456 HLA-DOAP06340 250 aa26.92■■□□□ 1.9
VTI1B-201ENST00000216456 IFIT2P09913 472 aaKnown RBP26.92■■□□□ 1.9
VTI1B-201ENST00000216456 WDR18Q9BV38 432 aa26.92■■□□□ 1.9
VTI1B-201ENST00000216456 AS3MTQ9HBK9 375 aa26.92■■□□□ 1.9
VTI1B-201ENST00000216456 BIN2Q9UBW5 565 aaPredicted RBP26.92■■□□□ 1.9
VTI1B-201ENST00000216456 HMMRO75330 724 aa26.91■■□□□ 1.9
VTI1B-201ENST00000216456 ASNSP08243 561 aa26.91■■□□□ 1.9
VTI1B-201ENST00000216456 PLCD1P51178 756 aa26.91■■□□□ 1.9
VTI1B-201ENST00000216456 BACE1P56817 501 aa26.91■■□□□ 1.9
VTI1B-201ENST00000216456 SLC9C2Q5TAH2 1124 aa26.91■■□□□ 1.9
VTI1B-201ENST00000216456 SMARCA5O60264 1052 aaPredicted RBP26.9■■□□□ 1.9
VTI1B-201ENST00000216456 GH2P01242 217 aa26.9■■□□□ 1.9
VTI1B-201ENST00000216456 CCL5P13501 91 aa26.9■■□□□ 1.9
VTI1B-201ENST00000216456 BOLA2Q9H3K6 86 aa26.9■■□□□ 1.9
VTI1B-201ENST00000216456 PNMA3Q9UL41 463 aa26.9■■□□□ 1.9
VTI1B-201ENST00000216456 TAOK2Q9UL54 1235 aa26.9■■□□□ 1.9
VTI1B-201ENST00000216456 MYH1P12882 1939 aa26.9■■□□□ 1.9
VTI1B-201ENST00000216456 ZNF532Q9HCE3 1301 aa26.9■■□□□ 1.9
VTI1B-201ENST00000216456 MAGEB6P1A0A0J9YX57 407 aa26.89■■□□□ 1.9
VTI1B-201ENST00000216456 ADCY3O60266 1144 aa26.89■■□□□ 1.9
VTI1B-201ENST00000216456 IGSF3O75054 1194 aa26.89■■□□□ 1.9
VTI1B-201ENST00000216456 FAM110CQ1W6H9 321 aa26.89■■□□□ 1.9
VTI1B-201ENST00000216456 TBC1D2Q9BYX2 928 aa26.89■■□□□ 1.9
VTI1B-201ENST00000216456 UNC93B1Q9H1C4 597 aa26.89■■□□□ 1.9
VTI1B-201ENST00000216456 TCRBV5S4A2TA0A5A2 114 aa26.88■■□□□ 1.89
VTI1B-201ENST00000216456 P2RX7Q99572 595 aaKnown RBP26.88■■□□□ 1.89
VTI1B-201ENST00000216456 DOCK3Q8IZD9 2030 aa26.87■■□□□ 1.89
VTI1B-201ENST00000216456 RAB11FIP3O75154 756 aa26.87■■□□□ 1.89
VTI1B-201ENST00000216456 ZYXQ15942 572 aaKnown RBP26.87■■□□□ 1.89
VTI1B-201ENST00000216456 TATDN1Q6P1N9 297 aa26.87■■□□□ 1.89
VTI1B-201ENST00000216456 LCORLQ8N3X6 602 aa26.87■■□□□ 1.89
VTI1B-201ENST00000216456 SDR42E1Q8WUS8 393 aa26.87■■□□□ 1.89
VTI1B-201ENST00000216456 RNF208Q9H0X6 261 aa26.87■■□□□ 1.89
VTI1B-201ENST00000216456 TXNRD2Q9NNW7 524 aa26.87■■□□□ 1.89
VTI1B-201ENST00000216456 EMILIN3Q9NT22 766 aa26.87■■□□□ 1.89
VTI1B-201ENST00000216456 SERPINB13Q9UIV8 391 aa26.87■■□□□ 1.89
VTI1B-201ENST00000216456 USP17L10C9JJH3 530 aa26.86■■□□□ 1.89
VTI1B-201ENST00000216456 CYP2D6P10635 497 aa26.86■■□□□ 1.89
VTI1B-201ENST00000216456 TTF1Q15361 905 aaPredicted RBP26.86■■□□□ 1.89
VTI1B-201ENST00000216456 POTEEQ6S8J3 1075 aa26.86■■□□□ 1.89
VTI1B-201ENST00000216456 PPIL4Q8WUA2 492 aaKnown RBP eCLIP26.86■■□□□ 1.89
VTI1B-201ENST00000216456 TMOD4Q9NZQ9 345 aa26.86■■□□□ 1.89
VTI1B-201ENST00000216456 SMIM22K7EJ46 135 aa26.85■■□□□ 1.89
VTI1B-201ENST00000216456 INHAP05111 366 aa26.85■■□□□ 1.89
VTI1B-201ENST00000216456 SHMT1P34896 483 aa26.85■■□□□ 1.89
VTI1B-201ENST00000216456 SLAIN1Q8ND83 568 aa26.85■■□□□ 1.89
VTI1B-201ENST00000216456 ACER1Q8TDN7 264 aa26.85■■□□□ 1.89
VTI1B-201ENST00000216456 ARMT1Q9H993 441 aa26.85■■□□□ 1.89
VTI1B-201ENST00000216456 DDX60LQ5H9U9 1706 aaKnown RBP26.85■■□□□ 1.89
VTI1B-201ENST00000216456 PRKAB2O43741 272 aa26.84■■□□□ 1.89
VTI1B-201ENST00000216456 GCLCP48506 637 aaPredicted RBP26.84■■□□□ 1.89
VTI1B-201ENST00000216456 IRX3P78415 501 aaPredicted RBP26.84■■□□□ 1.89
VTI1B-201ENST00000216456 PABPC4Q13310 644 aaKnown RBP eCLIP26.84■■□□□ 1.894e-8■■■□□ 16.8
VTI1B-201ENST00000216456 PDE3AQ14432 1141 aa26.84■■□□□ 1.89
VTI1B-201ENST00000216456 RAB3GAP1Q15042 981 aa26.84■■□□□ 1.89
VTI1B-201ENST00000216456 EHD4Q9H223 541 aa26.84■■□□□ 1.89
VTI1B-201ENST00000216456 PAG1Q9NWQ8 432 aa26.84■■□□□ 1.89
VTI1B-201ENST00000216456 COA7Q96BR5 231 aa26.83■■□□□ 1.89
VTI1B-201ENST00000216456 C19orf81C9J6K1 198 aa26.82■■□□□ 1.88
VTI1B-201ENST00000216456 POLR3DP05423 398 aaPredicted RBP26.82■■□□□ 1.88
VTI1B-201ENST00000216456 GJB1P08034 283 aa26.82■■□□□ 1.88
VTI1B-201ENST00000216456 ATP5JP18859 108 aa26.82■■□□□ 1.88
VTI1B-201ENST00000216456 HOXA7P31268 230 aaPredicted RBP26.82■■□□□ 1.88
VTI1B-201ENST00000216456 GUCY1A2P33402 732 aa26.82■■□□□ 1.88
VTI1B-201ENST00000216456 GJA8P48165 433 aa26.82■■□□□ 1.88
VTI1B-201ENST00000216456 HERVK_113P62684 666 aa26.82■■□□□ 1.88
VTI1B-201ENST00000216456 UBXN2AP68543 259 aa26.82■■□□□ 1.88
VTI1B-201ENST00000216456 TRIM32Q13049 653 aa26.82■■□□□ 1.88
VTI1B-201ENST00000216456 IRF5Q13568 498 aa26.82■■□□□ 1.88
VTI1B-201ENST00000216456 CERKLQ49MI3 558 aaPredicted RBP26.82■■□□□ 1.88
VTI1B-201ENST00000216456 TTC6Q86TZ1 520 aa26.82■■□□□ 1.88
VTI1B-201ENST00000216456 CERS3Q8IU89 383 aa26.82■■□□□ 1.88
VTI1B-201ENST00000216456 SLC44A5Q8NCS7 719 aa26.82■■□□□ 1.88
VTI1B-201ENST00000216456 MCM9Q9NXL9 1143 aa26.82■■□□□ 1.88
VTI1B-201ENST00000216456 GJD2Q9UKL4 321 aa26.82■■□□□ 1.88
VTI1B-201ENST00000216456 NAV1Q8NEY1 1877 aa26.81■■□□□ 1.88
VTI1B-201ENST00000216456 ABCB5Q2M3G0 1257 aa26.81■■□□□ 1.88
VTI1B-201ENST00000216456 Q3C1V9 767 aa26.81■■□□□ 1.88
VTI1B-201ENST00000216456 CRNKL1Q9BZJ0 848 aaKnown RBP26.81■■□□□ 1.88
VTI1B-201ENST00000216456 DCP1AQ9NPI6 582 aaPredicted RBP26.81■■□□□ 1.88
VTI1B-201ENST00000216456 RBPJLQ9UBG7 517 aa26.81■■□□□ 1.88
VTI1B-201ENST00000216456 MORF4L1Q9UBU8 362 aa26.81■■□□□ 1.88
VTI1B-201ENST00000216456 ADD2P35612 726 aa26.8■■□□□ 1.88
VTI1B-201ENST00000216456 GABPAQ06546 454 aa26.8■■□□□ 1.88
VTI1B-201ENST00000216456 U2AF1L4Q8WU68 220 aaKnown RBP26.8■■□□□ 1.88
VTI1B-201ENST00000216456 DYNLL2Q96FJ2 89 aa26.8■■□□□ 1.88
VTI1B-201ENST00000216456 FEZ1Q99689 392 aa26.8■■□□□ 1.88
VTI1B-201ENST00000216456 HAUS7Q99871 368 aa26.8■■□□□ 1.88
VTI1B-201ENST00000216456 GINM1Q9NU53 330 aa26.8■■□□□ 1.88
VTI1B-201ENST00000216456 CYP2D7A0A087X1C5 515 aa26.79■■□□□ 1.88
VTI1B-201ENST00000216456 MBD4O95243 580 aa26.79■■□□□ 1.88
VTI1B-201ENST00000216456 SEPT2Q15019 361 aa26.79■■□□□ 1.88
VTI1B-201ENST00000216456 TSHZ3Q63HK5 1081 aa26.79■■□□□ 1.88
VTI1B-201ENST00000216456 USP17L2Q6R6M4 530 aa26.79■■□□□ 1.88
VTI1B-201ENST00000216456 PXYLP1Q8TE99 480 aa26.79■■□□□ 1.88
VTI1B-201ENST00000216456 PAGR1Q9BTK6 254 aa26.79■■□□□ 1.88
VTI1B-201ENST00000216456 LRRCC1Q9C099 1032 aa26.79■■□□□ 1.88
VTI1B-201ENST00000216456 DEFB118Q96PH6 123 aa26.78■■□□□ 1.88
VTI1B-201ENST00000216456 PORCNQ9H237 461 aa26.78■■□□□ 1.88
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms