RNA–Protein interactions for RNA: ENSMUST00000042717.12

Trim39-201, Transcript of E3 ubiquitin-protein ligase TRIM39, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim39, Length 3,085 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim39-201ENSMUST00000042717 UtrnE9Q6R7 3430 aa10.1□□□□□ -0.79
Trim39-201ENSMUST00000042717 VirmaA2AIV2 1811 aaKnown RBP10.1□□□□□ -0.79
Trim39-201ENSMUST00000042717 AfdnQ9QZQ1 1820 aaKnown RBP10.1□□□□□ -0.79
Trim39-201ENSMUST00000042717 Gm30191A0A0U1RNT7 187 aa10.09□□□□□ -0.79
Trim39-201ENSMUST00000042717 TrdnE9Q9K5 693 aa10.09□□□□□ -0.79
Trim39-201ENSMUST00000042717 Nfil3O08750 462 aa10.09□□□□□ -0.79
Trim39-201ENSMUST00000042717 Magea1O89006 320 aa10.09□□□□□ -0.79
Trim39-201ENSMUST00000042717 Magea5O89009 320 aa10.09□□□□□ -0.79
Trim39-201ENSMUST00000042717 CnpP16330 420 aa10.09□□□□□ -0.79
Trim39-201ENSMUST00000042717 Vcam1P29533 739 aa10.09□□□□□ -0.79
Trim39-201ENSMUST00000042717 Tbc1d9bQ5SVR0 1263 aa10.09□□□□□ -0.79
Trim39-201ENSMUST00000042717 Samm50Q8BGH2 469 aa10.09□□□□□ -0.79
Trim39-201ENSMUST00000042717 Ccer1Q9CQL2 403 aa10.09□□□□□ -0.79
Trim39-201ENSMUST00000042717 Akap8Q9DBR0 687 aaKnown RBP10.09□□□□□ -0.79
Trim39-201ENSMUST00000042717 Trmt112Q9DCG9 125 aa10.09□□□□□ -0.79
Trim39-201ENSMUST00000042717 Magea2Q9R2A2 320 aa10.09□□□□□ -0.79
Trim39-201ENSMUST00000042717 Klrc1Q9Z202 244 aa10.09□□□□□ -0.79
Trim39-201ENSMUST00000042717 Homer1Q9Z2Y3 366 aa10.09□□□□□ -0.79
Trim39-201ENSMUST00000042717 Zscan18E9PUD6 809 aa10.09□□□□□ -0.79
Trim39-201ENSMUST00000042717 Copb2O55029 905 aa10.09□□□□□ -0.79
Trim39-201ENSMUST00000042717 Lamc2Q61092 1191 aa10.09□□□□□ -0.79
Trim39-201ENSMUST00000042717 Ccdc93Q7TQK5 629 aa10.09□□□□□ -0.79
Trim39-201ENSMUST00000042717 Ift74Q8BKE9 600 aa10.09□□□□□ -0.79
Trim39-201ENSMUST00000042717 VmacQ8BP01 174 aa10.09□□□□□ -0.79
Trim39-201ENSMUST00000042717 Sec62Q8BU14 398 aaKnown RBP10.09□□□□□ -0.79
Trim39-201ENSMUST00000042717 Epha10Q8BYG9 1007 aa10.09□□□□□ -0.79
Trim39-201ENSMUST00000042717 FktnQ8R507 461 aa10.09□□□□□ -0.79
Trim39-201ENSMUST00000042717 Srgap1Q91Z69 1062 aa10.09□□□□□ -0.79
Trim39-201ENSMUST00000042717 Mrps5Q99N87 432 aaKnown RBP10.09□□□□□ -0.79
Trim39-201ENSMUST00000042717 Mad2l2Q9D752 211 aa10.09□□□□□ -0.79
Trim39-201ENSMUST00000042717 Stk39Q9Z1W9 556 aa10.09□□□□□ -0.79
Trim39-201ENSMUST00000042717 Ecm29Q6PDI5 1840 aa10.09□□□□□ -0.79
Trim39-201ENSMUST00000042717 Lins1Q3U1D0 764 aa10.08□□□□□ -0.8
Trim39-201ENSMUST00000042717 Cep63Q3UPP8 700 aa10.08□□□□□ -0.8
Trim39-201ENSMUST00000042717 Glra4Q61603 456 aa10.08□□□□□ -0.8
Trim39-201ENSMUST00000042717 Tmem39bQ810L4 492 aa10.08□□□□□ -0.8
Trim39-201ENSMUST00000042717 PaoxQ8C0L6 504 aa10.08□□□□□ -0.8
Trim39-201ENSMUST00000042717 Ccdc178Q8CDV0 866 aa10.08□□□□□ -0.8
Trim39-201ENSMUST00000042717 Mrps25Q9D125 171 aaKnown RBP10.08□□□□□ -0.8
Trim39-201ENSMUST00000042717 Nfe2l3Q9WTM4 660 aa10.08□□□□□ -0.8
Trim39-201ENSMUST00000042717 Tsc2Q61037 1814 aa10.08□□□□□ -0.8
Trim39-201ENSMUST00000042717 Mageb2A2AHM0 380 aa10.08□□□□□ -0.8
Trim39-201ENSMUST00000042717 Slc27a3O88561 667 aa10.08□□□□□ -0.8
Trim39-201ENSMUST00000042717 Pde4aO89084 844 aa10.08□□□□□ -0.8
Trim39-201ENSMUST00000042717 Ckap2Q3V1H1 664 aa10.08□□□□□ -0.8
Trim39-201ENSMUST00000042717 LrmpQ60664 539 aa10.08□□□□□ -0.8
Trim39-201ENSMUST00000042717 Tex2Q6ZPJ0 1128 aaKnown RBP10.08□□□□□ -0.8
Trim39-201ENSMUST00000042717 Tmc4Q7TQ65 694 aa10.08□□□□□ -0.8
Trim39-201ENSMUST00000042717 Krt85Q9Z2T6 507 aa10.08□□□□□ -0.8
Trim39-201ENSMUST00000042717 Tbc1d8bA3KGB4 1114 aa10.08□□□□□ -0.8
Trim39-201ENSMUST00000042717 D830030K20RikE9PYQ5 218 aa10.08□□□□□ -0.8
Trim39-201ENSMUST00000042717 Gm3043K7N693 218 aa10.08□□□□□ -0.8
Trim39-201ENSMUST00000042717 Gm16440K7N6G6 218 aa10.08□□□□□ -0.8
Trim39-201ENSMUST00000042717 Gm2244L7N2A3 218 aa10.08□□□□□ -0.8
Trim39-201ENSMUST00000042717 Gm3278L7N2D2 218 aa10.08□□□□□ -0.8
Trim39-201ENSMUST00000042717 Gm8271L7N2E2 218 aa10.08□□□□□ -0.8
Trim39-201ENSMUST00000042717 Sap30bpQ02614 308 aa10.08□□□□□ -0.8
Trim39-201ENSMUST00000042717 GmpsQ3THK7 693 aa10.08□□□□□ -0.8
Trim39-201ENSMUST00000042717 Tigd5Q499M4 642 aa10.08□□□□□ -0.8
Trim39-201ENSMUST00000042717 Dpf2Q61103 391 aaKnown RBP10.08□□□□□ -0.8
Trim39-201ENSMUST00000042717 Vil1Q62468 827 aa10.08□□□□□ -0.8
Trim39-201ENSMUST00000042717 Kdm4aQ8BW72 1064 aa10.08□□□□□ -0.8
Trim39-201ENSMUST00000042717 Tor1aip2Q8BYU6 502 aa10.08□□□□□ -0.8
Trim39-201ENSMUST00000042717 Plcd1Q8R3B1 756 aa10.08□□□□□ -0.8
Trim39-201ENSMUST00000042717 Borcs6Q9D6W8 360 aa10.08□□□□□ -0.8
Trim39-201ENSMUST00000042717 Itgb4A2A863 1818 aa10.07□□□□□ -0.8
Trim39-201ENSMUST00000042717 Peak1Q69Z38 1735 aa10.07□□□□□ -0.8
Trim39-201ENSMUST00000042717 Calm1P0DP26 149 aaKnown RBP10.07□□□□□ -0.8
Trim39-201ENSMUST00000042717 Calm2P0DP27 149 aaKnown RBP10.07□□□□□ -0.8
Trim39-201ENSMUST00000042717 Calm3P0DP28 149 aaKnown RBP10.07□□□□□ -0.8
Trim39-201ENSMUST00000042717 Cap1P40124 474 aa10.07□□□□□ -0.8
Trim39-201ENSMUST00000042717 Myo1bP46735 1107 aa10.07□□□□□ -0.8
Trim39-201ENSMUST00000042717 Npr3P70180 536 aa10.07□□□□□ -0.8
Trim39-201ENSMUST00000042717 Scg2Q03517 617 aa10.07□□□□□ -0.8
Trim39-201ENSMUST00000042717 Bicd2Q921C5 820 aa10.07□□□□□ -0.8
Trim39-201ENSMUST00000042717 Etnk1Q9D4V0 363 aa10.07□□□□□ -0.8
Trim39-201ENSMUST00000042717 Ndufa8Q9DCJ5 172 aa10.07□□□□□ -0.8
Trim39-201ENSMUST00000042717 Znf287Q9EQB9 759 aa10.07□□□□□ -0.8
Trim39-201ENSMUST00000042717 Sall1Q9ER74 1322 aa10.07□□□□□ -0.8
Trim39-201ENSMUST00000042717 A0A1W2P6Q8 802 aa10.07□□□□□ -0.8
Trim39-201ENSMUST00000042717 Gm9048A0A1W2P7H4 802 aa10.07□□□□□ -0.8
Trim39-201ENSMUST00000042717 A0A1W2P7Z8 802 aa10.07□□□□□ -0.8
Trim39-201ENSMUST00000042717 Gm9046A0A1W2P855 802 aa10.07□□□□□ -0.8
Trim39-201ENSMUST00000042717 Psmd1Q3TXS7 953 aa10.07□□□□□ -0.8
Trim39-201ENSMUST00000042717 Klrg2Q3UM83 387 aa10.07□□□□□ -0.8
Trim39-201ENSMUST00000042717 Ube2oQ6ZPJ3 1288 aa10.07□□□□□ -0.8
Trim39-201ENSMUST00000042717 OplahQ8K010 1288 aa10.07□□□□□ -0.8
Trim39-201ENSMUST00000042717 Gpaa1Q9WTK3 621 aa10.07□□□□□ -0.8
Trim39-201ENSMUST00000042717 Prss51A0A286YDY8 319 aa10.06□□□□□ -0.8
Trim39-201ENSMUST00000042717 Qrich1Q3UA37 777 aa10.06□□□□□ -0.8
Trim39-201ENSMUST00000042717 Armc2Q3URY6 854 aa10.06□□□□□ -0.8
Trim39-201ENSMUST00000042717 Znf697Q569E7 569 aa10.06□□□□□ -0.8
Trim39-201ENSMUST00000042717 Kif1bpQ6ZPU9 617 aa10.06□□□□□ -0.8
Trim39-201ENSMUST00000042717 Lrrc15Q80X72 579 aa10.06□□□□□ -0.8
Trim39-201ENSMUST00000042717 Slitrk3Q810B9 980 aa10.06□□□□□ -0.8
Trim39-201ENSMUST00000042717 Nup88Q8CEC0 753 aaKnown RBP10.06□□□□□ -0.8
Trim39-201ENSMUST00000042717 Ndufb9Q9CQJ8 179 aa10.06□□□□□ -0.8
Trim39-201ENSMUST00000042717 Glrx3Q9CQM9 337 aa10.06□□□□□ -0.8
Trim39-201ENSMUST00000042717 Igbp1bQ9QZ29 343 aa10.06□□□□□ -0.8
Trim39-201ENSMUST00000042717 Dhx8A2A4P0 1244 aaKnown RBP10.06□□□□□ -0.8
Retrieved 100 of 22,080 RNA–protein pairs in 39.2 ms