RNA–Protein interactions for RNA: YGR135W

PRE9, Transcript of Alpha 3 subunit of the 20S proteasome, yeastyeast

Gene PRE9, Length 777 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRE9YGR135W HCR1Q05775 265 aaKnown RBP4.56□□□□□ -1.68
PRE9YGR135W NOP6Q07623 225 aaKnown RBP4.56□□□□□ -1.68
PRE9YGR135W SDH5Q08230 162 aa4.56□□□□□ -1.68
PRE9YGR135W AFT2Q08957 416 aa4.56□□□□□ -1.68
PRE9YGR135W THI21Q08975 551 aa4.56□□□□□ -1.68
PRE9YGR135W HMI1Q12039 706 aa4.56□□□□□ -1.68
PRE9YGR135W SLM3Q12093 417 aa4.56□□□□□ -1.68
PRE9YGR135W YIL177CP40434 1758 aa4.55□□□□□ -1.68
PRE9YGR135W YJL225CP40889 1758 aa4.55□□□□□ -1.68
PRE9YGR135W SAC3P46674 1301 aa4.55□□□□□ -1.68
PRE9YGR135W PHO5P00635 467 aa4.55□□□□□ -1.68
PRE9YGR135W RPS17AP02407 136 aaKnown RBP4.55□□□□□ -1.68
PRE9YGR135W RAD1P06777 1100 aa4.55□□□□□ -1.68
PRE9YGR135W YEL076C-AP0CX16 216 aa4.55□□□□□ -1.68
PRE9YGR135W YLR464WP0CX17 216 aa4.55□□□□□ -1.68
PRE9YGR135W HOM3P10869 527 aa4.55□□□□□ -1.68
PRE9YGR135W PMR1P13586 950 aa4.55□□□□□ -1.68
PRE9YGR135W RPS17BP14127 136 aaKnown RBP4.55□□□□□ -1.68
PRE9YGR135W FUR1P18562 216 aaKnown RBP4.55□□□□□ -1.68
PRE9YGR135W SEC14P24280 304 aaKnown RBP4.55□□□□□ -1.68
PRE9YGR135W CLB4P24871 460 aa4.55□□□□□ -1.68
PRE9YGR135W PGS1P25578 521 aa4.55□□□□□ -1.68
PRE9YGR135W PAH1P32567 862 aa4.55□□□□□ -1.68
PRE9YGR135W YET1P35723 206 aa4.55□□□□□ -1.68
PRE9YGR135W NUP120P35729 1037 aa4.55□□□□□ -1.68
PRE9YGR135W HEL1P36113 551 aa4.55□□□□□ -1.68
PRE9YGR135W EFM2P38347 419 aa4.55□□□□□ -1.68
PRE9YGR135W LAM1P38851 1228 aa4.55□□□□□ -1.68
PRE9YGR135W SWD1P39706 426 aa4.55□□□□□ -1.68
PRE9YGR135W GIP4P39732 760 aa4.55□□□□□ -1.68
PRE9YGR135W YEL076CP39971 216 aa4.55□□□□□ -1.68
PRE9YGR135W VHR1P40522 640 aa4.55□□□□□ -1.68
PRE9YGR135W BRE5P53741 515 aaKnown RBP4.55□□□□□ -1.68
PRE9YGR135W DUS1P53759 423 aaKnown RBP4.55□□□□□ -1.68
PRE9YGR135W YOR352WQ08816 343 aa4.55□□□□□ -1.68
PRE9YGR135W HSH49Q99181 213 aaPredicted RBP4.55□□□□□ -1.68
PRE9YGR135W RSF2P46974 1380 aa4.54□□□□□ -1.68
PRE9YGR135W TY4B-HP0C2J7 1802 aa4.54□□□□□ -1.68
PRE9YGR135W TY4B-JP47024 1803 aa4.54□□□□□ -1.68
PRE9YGR135W RPS13P05756 151 aaKnown RBP4.54□□□□□ -1.68
PRE9YGR135W SNF1P06782 633 aaKnown RBP4.54□□□□□ -1.68
PRE9YGR135W CDC26P14724 124 aa4.54□□□□□ -1.68
PRE9YGR135W GUK1P15454 187 aaKnown RBP4.54□□□□□ -1.68
PRE9YGR135W PFK2P16862 959 aaKnown RBP RIP-Chip data4.54□□□□□ -1.68not detected
PRE9YGR135W SPO11P23179 398 aa4.54□□□□□ -1.68
PRE9YGR135W RAD57P25301 460 aa4.54□□□□□ -1.68
PRE9YGR135W RAD51P25454 400 aa4.54□□□□□ -1.68
PRE9YGR135W YCL049CP25577 312 aa4.54□□□□□ -1.68
PRE9YGR135W APL1P27351 700 aa4.54□□□□□ -1.68
PRE9YGR135W PAP1P29468 568 aaKnown RBP4.54□□□□□ -1.68
PRE9YGR135W PDB1P32473 366 aaKnown RBP4.54□□□□□ -1.68
PRE9YGR135W CNS1P33313 385 aa4.54□□□□□ -1.68
PRE9YGR135W PXA2P34230 853 aa4.54□□□□□ -1.68
PRE9YGR135W SKI2P35207 1287 aaKnown RBP RIP-Chip data4.54□□□□□ -1.68not detected
PRE9YGR135W BCD1P38772 366 aa4.54□□□□□ -1.68
PRE9YGR135W AXL2P38928 823 aa4.54□□□□□ -1.68
PRE9YGR135W NOP16P40007 231 aaKnown RBP4.54□□□□□ -1.68
PRE9YGR135W MRX1P40050 688 aa4.54□□□□□ -1.68
PRE9YGR135W PUG1P40100 303 aa4.54□□□□□ -1.68
PRE9YGR135W SHQ1P40486 507 aaPredicted RBP4.54□□□□□ -1.68
PRE9YGR135W DPH1P40487 425 aaKnown RBP4.54□□□□□ -1.68
PRE9YGR135W IRC5P43610 853 aa4.54□□□□□ -1.68
PRE9YGR135W TRS85P46944 698 aa4.54□□□□□ -1.68
PRE9YGR135W SGM1P47166 707 aa4.54□□□□□ -1.68
PRE9YGR135W MTR3P48240 250 aaPredicted RBP4.54□□□□□ -1.68
PRE9YGR135W ORC4P54791 529 aa4.54□□□□□ -1.68
PRE9YGR135W NGL3Q03210 505 aa4.54□□□□□ -1.68
PRE9YGR135W VPS64Q03944 604 aa4.54□□□□□ -1.68
PRE9YGR135W SSL1Q04673 461 aaPredicted RBP4.54□□□□□ -1.68
PRE9YGR135W GSF2Q04697 403 aaKnown RBP4.54□□□□□ -1.68
PRE9YGR135W VID22Q05934 901 aa4.54□□□□□ -1.68
PRE9YGR135W YLR352WQ06479 807 aa4.54□□□□□ -1.68
PRE9YGR135W TAH18Q12181 623 aa4.54□□□□□ -1.68
PRE9YGR135W HIF1Q12373 385 aa4.54□□□□□ -1.68
PRE9YGR135W MIS1P09440 975 aaKnown RBP4.53□□□□□ -1.68
PRE9YGR135W MTF2P10849 440 aa4.53□□□□□ -1.68
PRE9YGR135W CMP2P14747 604 aa4.53□□□□□ -1.68
PRE9YGR135W KRS1P15180 591 aaKnown RBP4.53□□□□□ -1.68
PRE9YGR135W POL3P15436 1097 aa4.53□□□□□ -1.68
PRE9YGR135W NCP1P16603 691 aaKnown RBP4.53□□□□□ -1.68
PRE9YGR135W SPO12P17123 173 aa4.53□□□□□ -1.68
PRE9YGR135W VPS1P21576 704 aaKnown RBP4.53□□□□□ -1.68
PRE9YGR135W MCM3P24279 971 aaKnown RBP4.53□□□□□ -1.68
PRE9YGR135W CDC60P26637 1090 aaKnown RBP4.53□□□□□ -1.68
PRE9YGR135W CMK1P27466 446 aaKnown RBP4.53□□□□□ -1.68
PRE9YGR135W BMH1P29311 267 aaKnown RBP4.53□□□□□ -1.68
PRE9YGR135W ZUO1P32527 433 aaKnown RBP4.53□□□□□ -1.68
PRE9YGR135W SAC6P32599 642 aaKnown RBP4.53□□□□□ -1.68
PRE9YGR135W TOD6P34219 525 aa4.53□□□□□ -1.68
PRE9YGR135W PEX5P35056 612 aa4.53□□□□□ -1.68
PRE9YGR135W MRPL36P36531 177 aa4.53□□□□□ -1.68
PRE9YGR135W APN2P38207 520 aa4.53□□□□□ -1.68
PRE9YGR135W CTM1P38818 585 aa4.53□□□□□ -1.68
PRE9YGR135W BEM4P39011 633 aa4.53□□□□□ -1.68
PRE9YGR135W IMA5P40884 581 aa4.53□□□□□ -1.68
PRE9YGR135W PXA1P41909 870 aa4.53□□□□□ -1.68
PRE9YGR135W SSY5P47002 699 aa4.53□□□□□ -1.68
PRE9YGR135W ENP2P48234 707 aaKnown RBP4.53□□□□□ -1.68
PRE9YGR135W EXG2P52911 562 aa4.53□□□□□ -1.68
PRE9YGR135W CPR6P53691 371 aaKnown RBP4.53□□□□□ -1.68
Retrieved 100 of 5,963 RNA–protein pairs in 18.6 ms