RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-222ENST00000642141 ZNF512BQ96KM6 892 aaPredicted RBP12.57□□□□□ -0.4
SCN1A-222ENST00000642141 ZCCHC17Q9NP64 241 aaKnown RBP12.57□□□□□ -0.4
SCN1A-222ENST00000642141 A0A0G2JLL6 359 aaPredicted RBP12.56□□□□□ -0.4
SCN1A-222ENST00000642141 FMNL1O95466 1100 aaPredicted RBP12.56□□□□□ -0.4
SCN1A-222ENST00000642141 PSMC4P43686 418 aa12.56□□□□□ -0.4
SCN1A-222ENST00000642141 JAG1P78504 1218 aa12.56□□□□□ -0.4
SCN1A-222ENST00000642141 SPP2Q13103 211 aa12.56□□□□□ -0.4
SCN1A-222ENST00000642141 ARHGEF6Q15052 776 aa12.56□□□□□ -0.4
SCN1A-222ENST00000642141 SHROOM1Q2M3G4 852 aaPredicted RBP12.56□□□□□ -0.4
SCN1A-222ENST00000642141 SLC9C1Q4G0N8 1177 aa12.56□□□□□ -0.4
SCN1A-222ENST00000642141 PRRT2Q7Z6L0 340 aaPredicted RBP12.56□□□□□ -0.4
SCN1A-222ENST00000642141 TRIM47Q96LD4 638 aa12.56□□□□□ -0.4
SCN1A-222ENST00000642141 DDX19BQ9UMR2 479 aa12.56□□□□□ -0.4
SCN1A-222ENST00000642141 ZSWIM8A7E2V4 1837 aa12.55□□□□□ -0.4
SCN1A-222ENST00000642141 DOCK2Q92608 1830 aa12.55□□□□□ -0.4
SCN1A-222ENST00000642141 TBC1D12O60347 775 aa12.55□□□□□ -0.4
SCN1A-222ENST00000642141 NPM3O75607 178 aaKnown RBP12.55□□□□□ -0.4
SCN1A-222ENST00000642141 MAP4K4O95819 1239 aaPredicted RBP12.55□□□□□ -0.4
SCN1A-222ENST00000642141 IFIT2P09913 472 aaKnown RBP12.55□□□□□ -0.4
SCN1A-222ENST00000642141 PLCG2P16885 1265 aa12.55□□□□□ -0.4
SCN1A-222ENST00000642141 EN2P19622 333 aaPredicted RBP12.55□□□□□ -0.4
SCN1A-222ENST00000642141 PPP4CP60510 307 aa12.55□□□□□ -0.4
SCN1A-222ENST00000642141 TREML2Q5T2D2 321 aa12.55□□□□□ -0.4
SCN1A-222ENST00000642141 FASTKD5Q7L8L6 764 aaKnown RBP12.55□□□□□ -0.4
SCN1A-222ENST00000642141 CRACR2BQ8N4Y2 399 aaPredicted RBP12.55□□□□□ -0.4
SCN1A-222ENST00000642141 PI4KBQ9UBF8 816 aa12.55□□□□□ -0.4
SCN1A-222ENST00000642141 FLT1P17948 1338 aa12.55□□□□□ -0.4
SCN1A-222ENST00000642141 HMMRO75330 724 aa12.54□□□□□ -0.4
SCN1A-222ENST00000642141 GDF11O95390 407 aa12.54□□□□□ -0.4
SCN1A-222ENST00000642141 CAP2P40123 477 aa12.54□□□□□ -0.4
SCN1A-222ENST00000642141 USP5P45974 858 aa12.54□□□□□ -0.4
SCN1A-222ENST00000642141 HSP90AB4PQ58FF6 505 aa12.54□□□□□ -0.4
SCN1A-222ENST00000642141 RPAP2Q8IXW5 612 aaPredicted RBP12.54□□□□□ -0.4
SCN1A-222ENST00000642141 CLASRPQ8N2M8 674 aaKnown RBP12.54□□□□□ -0.4
SCN1A-222ENST00000642141 ARMC5Q96C12 935 aa12.54□□□□□ -0.4
SCN1A-222ENST00000642141 EDC3Q96F86 508 aaKnown RBP12.54□□□□□ -0.4
SCN1A-222ENST00000642141 PARK7Q99497 189 aaKnown RBP12.54□□□□□ -0.4
SCN1A-222ENST00000642141 DNAJC2Q99543 621 aaKnown RBP12.54□□□□□ -0.4
SCN1A-222ENST00000642141 TRIM34Q9BYJ4 488 aa12.54□□□□□ -0.4
SCN1A-222ENST00000642141 ADGRA2Q96PE1 1338 aa12.54□□□□□ -0.4
SCN1A-222ENST00000642141 MYO5AQ9Y4I1 1855 aaKnown RBP12.53□□□□□ -0.4
SCN1A-222ENST00000642141 GOLIM4O00461 696 aa12.53□□□□□ -0.4
SCN1A-222ENST00000642141 SMARCA5O60264 1052 aaPredicted RBP12.53□□□□□ -0.4
SCN1A-222ENST00000642141 OSBPP22059 807 aa12.53□□□□□ -0.4
SCN1A-222ENST00000642141 HMGCS2P54868 508 aa12.53□□□□□ -0.4
SCN1A-222ENST00000642141 MAP3K12Q12852 859 aa12.53□□□□□ -0.4
SCN1A-222ENST00000642141 SLFNL1Q499Z3 407 aa12.53□□□□□ -0.4
SCN1A-222ENST00000642141 NBPF11Q86T75 865 aa12.53□□□□□ -0.4
SCN1A-222ENST00000642141 ZNF280CQ8ND82 737 aa12.53□□□□□ -0.4
SCN1A-222ENST00000642141 SMCR8Q8TEV9 937 aaPredicted RBP12.53□□□□□ -0.4
SCN1A-222ENST00000642141 KIF1BPQ96EK5 621 aa12.53□□□□□ -0.4
SCN1A-222ENST00000642141 ZNF333Q96JL9 665 aa12.53□□□□□ -0.4
SCN1A-222ENST00000642141 DHX36Q9H2U1 1008 aaKnown RBP12.53□□□□□ -0.4
SCN1A-222ENST00000642141 DNAJC18Q9H819 358 aa12.53□□□□□ -0.4
SCN1A-222ENST00000642141 MKI67P46013 3256 aaKnown RBP12.52□□□□□ -0.41
SCN1A-222ENST00000642141 USP17L5A8MUK1 530 aa12.52□□□□□ -0.41
SCN1A-222ENST00000642141 BCRP11274 1271 aa12.52□□□□□ -0.41
SCN1A-222ENST00000642141 SLC9C2Q5TAH2 1124 aa12.52□□□□□ -0.41
SCN1A-222ENST00000642141 ANKRD13CQ8N6S4 541 aa12.52□□□□□ -0.41
SCN1A-222ENST00000642141 TMEM106CQ9BVX2 250 aa12.52□□□□□ -0.41
SCN1A-222ENST00000642141 BOLA2Q9H3K6 86 aa12.52□□□□□ -0.41
SCN1A-222ENST00000642141 BIN2Q9UBW5 565 aaPredicted RBP12.52□□□□□ -0.41
SCN1A-222ENST00000642141 HERC5Q9UII4 1024 aaKnown RBP12.52□□□□□ -0.41
SCN1A-222ENST00000642141 PEX10O60683 326 aa12.51□□□□□ -0.41
SCN1A-222ENST00000642141 MTMR2Q13614 643 aa12.51□□□□□ -0.41
SCN1A-222ENST00000642141 FOXP4Q8IVH2 680 aaPredicted RBP12.51□□□□□ -0.41
SCN1A-222ENST00000642141 RAET1EQ8TD07 263 aa12.51□□□□□ -0.41
SCN1A-222ENST00000642141 SRRDQ9UH36 339 aa12.51□□□□□ -0.41
SCN1A-222ENST00000642141 TAOK2Q9UL54 1235 aa12.51□□□□□ -0.41
SCN1A-222ENST00000642141 GABRQQ9UN88 632 aa12.51□□□□□ -0.41
SCN1A-222ENST00000642141 AGTPBP1Q9UPW5 1226 aa12.51□□□□□ -0.41
SCN1A-222ENST00000642141 BRCA2P51587 3418 aa12.51□□□□□ -0.41
SCN1A-222ENST00000642141 MAGEB6P1A0A0J9YX57 407 aa12.5□□□□□ -0.41
SCN1A-222ENST00000642141 RAB11FIP3O75154 756 aa12.5□□□□□ -0.41
SCN1A-222ENST00000642141 HLA-DOAP06340 250 aa12.5□□□□□ -0.41
SCN1A-222ENST00000642141 PDE6AP16499 860 aa12.5□□□□□ -0.41
SCN1A-222ENST00000642141 HOXD10P28358 340 aa12.5□□□□□ -0.41
SCN1A-222ENST00000642141 FCGRTP55899 365 aa12.5□□□□□ -0.41
SCN1A-222ENST00000642141 EVX2Q03828 476 aa12.5□□□□□ -0.41
SCN1A-222ENST00000642141 PRKCZQ05513 592 aa12.5□□□□□ -0.41
SCN1A-222ENST00000642141 MTFR1Q15390 333 aa12.5□□□□□ -0.41
SCN1A-222ENST00000642141 MYPNQ86TC9 1320 aa12.5□□□□□ -0.41
SCN1A-222ENST00000642141 COL2A1P02458 1487 aaPredicted RBP12.5□□□□□ -0.41
SCN1A-222ENST00000642141 DOCK1Q14185 1865 aa12.5□□□□□ -0.41
SCN1A-222ENST00000642141 ZNF532Q9HCE3 1301 aa12.49□□□□□ -0.41
SCN1A-222ENST00000642141 GNRH1P01148 92 aa12.49□□□□□ -0.41
SCN1A-222ENST00000642141 GH2P01242 217 aa12.49□□□□□ -0.41
SCN1A-222ENST00000642141 CHGBP05060 677 aa12.49□□□□□ -0.41
SCN1A-222ENST00000642141 PDE3AQ14432 1141 aa12.49□□□□□ -0.41
SCN1A-222ENST00000642141 TTF1Q15361 905 aaPredicted RBP12.49□□□□□ -0.41
SCN1A-222ENST00000642141 ZYXQ15942 572 aaKnown RBP12.49□□□□□ -0.41
SCN1A-222ENST00000642141 METTL16Q86W50 562 aaKnown RBP12.49□□□□□ -0.41
SCN1A-222ENST00000642141 ASCC2Q9H1I8 757 aaPredicted RBP12.49□□□□□ -0.41
SCN1A-222ENST00000642141 CHMP4BQ9H444 224 aaKnown RBP12.49□□□□□ -0.41
SCN1A-222ENST00000642141 AS3MTQ9HBK9 375 aa12.49□□□□□ -0.41
SCN1A-222ENST00000642141 PHIPQ8WWQ0 1821 aa12.48□□□□□ -0.41
SCN1A-222ENST00000642141 MAST2Q6P0Q8 1798 aa12.48□□□□□ -0.41
SCN1A-222ENST00000642141 TNPO2O14787 897 aaKnown RBP12.48□□□□□ -0.41
SCN1A-222ENST00000642141 POLR3DP05423 398 aaPredicted RBP12.48□□□□□ -0.41
SCN1A-222ENST00000642141 ASNSP08243 561 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms