RNA–Protein interactions for RNA: ENST00000638725.1

SNIP1-204, Transcript of Smad nuclear interacting protein 1, humanhuman

TSL 2

Gene SNIP1, Length 2,761 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNIP1-204ENST00000638725 UBXN6Q9BZV1 441 aa12.49□□□□□ -0.41
SNIP1-204ENST00000638725 MRPL44Q9H9J2 332 aaKnown RBP12.49□□□□□ -0.41
SNIP1-204ENST00000638725 SEC31BQ9NQW1 1179 aa12.49□□□□□ -0.41
SNIP1-204ENST00000638725 RAI14Q9P0K7 980 aa12.49□□□□□ -0.41
SNIP1-204ENST00000638725 SLC12A7Q9Y666 1083 aa12.49□□□□□ -0.41
SNIP1-204ENST00000638725 TACC3Q9Y6A5 838 aa12.49□□□□□ -0.41
SNIP1-204ENST00000638725 PLEKHG2Q9H7P9 1386 aa12.49□□□□□ -0.41
SNIP1-204ENST00000638725 PCDH11XQ9BZA7 1347 aa12.49□□□□□ -0.41
SNIP1-204ENST00000638725 PCDH11YQ9BZA8 1340 aa12.49□□□□□ -0.41
SNIP1-204ENST00000638725 IFIT3O14879 490 aaKnown RBP12.49□□□□□ -0.41
SNIP1-204ENST00000638725 ATP8B1O43520 1251 aa12.49□□□□□ -0.41
SNIP1-204ENST00000638725 FMNL1O95466 1100 aaPredicted RBP12.49□□□□□ -0.41
SNIP1-204ENST00000638725 PTPREP23469 700 aa12.49□□□□□ -0.41
SNIP1-204ENST00000638725 ST5P78524 1137 aa12.49□□□□□ -0.41
SNIP1-204ENST00000638725 MORC3Q14149 939 aa12.49□□□□□ -0.41
SNIP1-204ENST00000638725 UBE3CQ15386 1083 aa12.49□□□□□ -0.41
SNIP1-204ENST00000638725 MLKLQ8NB16 471 aa12.49□□□□□ -0.41
SNIP1-204ENST00000638725 CCDC12Q8WUD4 166 aaPredicted RBP12.49□□□□□ -0.41
SNIP1-204ENST00000638725 GREM2Q9H772 168 aa12.49□□□□□ -0.41
SNIP1-204ENST00000638725 ZSWIM5Q9P217 1185 aa12.49□□□□□ -0.41
SNIP1-204ENST00000638725 HOOK1Q9UJC3 728 aaKnown RBP12.49□□□□□ -0.41
SNIP1-204ENST00000638725 MMP1P03956 469 aa12.48□□□□□ -0.41
SNIP1-204ENST00000638725 ATP2B1P20020 1258 aa12.48□□□□□ -0.41
SNIP1-204ENST00000638725 ITGA6P23229 1130 aa12.48□□□□□ -0.41
SNIP1-204ENST00000638725 PHKA1P46020 1223 aa12.48□□□□□ -0.41
SNIP1-204ENST00000638725 SARSP49591 514 aaKnown RBP12.48□□□□□ -0.41
SNIP1-204ENST00000638725 IRX5P78411 483 aaPredicted RBP12.48□□□□□ -0.41
SNIP1-204ENST00000638725 CCDC82Q8N4S0 544 aa12.48□□□□□ -0.41
SNIP1-204ENST00000638725 PLA2G12BQ9BX93 195 aa12.48□□□□□ -0.41
SNIP1-204ENST00000638725 TEX13AQ9BXU3 409 aaPredicted RBP12.48□□□□□ -0.41
SNIP1-204ENST00000638725 EPB41L4AQ9HCS5 686 aaPredicted RBP12.48□□□□□ -0.41
SNIP1-204ENST00000638725 STK36Q9NRP7 1315 aa12.48□□□□□ -0.41
SNIP1-204ENST00000638725 SOWAHDA6NJG2 315 aa12.48□□□□□ -0.41
SNIP1-204ENST00000638725 ERVV-2B6SEH9 535 aa12.48□□□□□ -0.41
SNIP1-204ENST00000638725 NR5A1Q13285 461 aa12.48□□□□□ -0.41
SNIP1-204ENST00000638725 SMC1AQ14683 1233 aaKnown RBP12.48□□□□□ -0.41
SNIP1-204ENST00000638725 TTF1Q15361 905 aaPredicted RBP12.48□□□□□ -0.41
SNIP1-204ENST00000638725 NT5DC1Q5TFE4 455 aa12.48□□□□□ -0.41
SNIP1-204ENST00000638725 USP49Q70CQ1 688 aa12.48□□□□□ -0.41
SNIP1-204ENST00000638725 ELOA2Q8IYF1 753 aaPredicted RBP12.48□□□□□ -0.41
SNIP1-204ENST00000638725 ZBTB38Q8NAP3 1195 aaPredicted RBP12.48□□□□□ -0.41
SNIP1-204ENST00000638725 AIDAQ96BJ3 306 aa12.48□□□□□ -0.41
SNIP1-204ENST00000638725 STRBPQ96SI9 672 aaKnown RBP12.48□□□□□ -0.41
SNIP1-204ENST00000638725 ZSWIM4Q9H7M6 989 aa12.48□□□□□ -0.41
SNIP1-204ENST00000638725 CNNM1Q9NRU3 951 aa12.48□□□□□ -0.41
SNIP1-204ENST00000638725 PCDHB6Q9Y5E3 794 aa12.48□□□□□ -0.41
SNIP1-204ENST00000638725 A0A0U1RQJ8 604 aa12.47□□□□□ -0.41
SNIP1-204ENST00000638725 NUTM2AQ8IVF1 878 aaPredicted RBP12.47□□□□□ -0.41
SNIP1-204ENST00000638725 CMTR1Q8N1G2 835 aaKnown RBP12.47□□□□□ -0.41
SNIP1-204ENST00000638725 TTLL11Q8NHH1 800 aa12.47□□□□□ -0.41
SNIP1-204ENST00000638725 ATRIPQ8WXE1 791 aa12.47□□□□□ -0.41
SNIP1-204ENST00000638725 TRERF1Q96PN7 1200 aa12.47□□□□□ -0.41
SNIP1-204ENST00000638725 ZKSCAN3Q9BRR0 538 aa12.47□□□□□ -0.41
SNIP1-204ENST00000638725 ARFGAP3Q9NP61 516 aa12.47□□□□□ -0.41
SNIP1-204ENST00000638725 TMEM51Q9NW97 253 aa12.47□□□□□ -0.41
SNIP1-204ENST00000638725 DACH1Q9UI36 760 aa12.47□□□□□ -0.41
SNIP1-204ENST00000638725 TCRBV5S4A2TA0A5A2 114 aa12.47□□□□□ -0.41
SNIP1-204ENST00000638725 TEX33O43247 280 aa12.47□□□□□ -0.41
SNIP1-204ENST00000638725 IFNAR1P17181 557 aa12.47□□□□□ -0.41
SNIP1-204ENST00000638725 GPTP24298 496 aa12.47□□□□□ -0.41
SNIP1-204ENST00000638725 LIFRP42702 1097 aa12.47□□□□□ -0.41
SNIP1-204ENST00000638725 SAFBQ15424 915 aaKnown RBP eCLIP12.47□□□□□ -0.41
SNIP1-204ENST00000638725 RABGGTAQ92696 567 aa12.47□□□□□ -0.41
SNIP1-204ENST00000638725 GOLGA1Q92805 767 aa12.47□□□□□ -0.41
SNIP1-204ENST00000638725 LZTFL1Q9NQ48 299 aa12.47□□□□□ -0.41
SNIP1-204ENST00000638725 MAP3K15Q6ZN16 1313 aa12.47□□□□□ -0.41
SNIP1-204ENST00000638725 ACTN4O43707 911 aaKnown RBP12.47□□□□□ -0.41
SNIP1-204ENST00000638725 TRIM28Q13263 835 aaKnown RBP12.47□□□□□ -0.41
SNIP1-204ENST00000638725 NR1I3Q14994 352 aa12.47□□□□□ -0.41
SNIP1-204ENST00000638725 FUT8Q9BYC5 575 aa12.47□□□□□ -0.41
SNIP1-204ENST00000638725 TBC1D2BQ9UPU7 963 aa12.47□□□□□ -0.41
SNIP1-204ENST00000638725 A0A1B0GTH6 734 aa12.46□□□□□ -0.41
SNIP1-204ENST00000638725 RRP12Q5JTH9 1297 aaKnown RBP12.46□□□□□ -0.41
SNIP1-204ENST00000638725 RAD9BQ6WBX8 426 aa12.46□□□□□ -0.41
SNIP1-204ENST00000638725 IFNL3Q8IZI9 196 aa12.46□□□□□ -0.41
SNIP1-204ENST00000638725 VGLL2Q8N8G2 317 aa12.46□□□□□ -0.41
SNIP1-204ENST00000638725 OXER1Q8TDS5 423 aa12.46□□□□□ -0.41
SNIP1-204ENST00000638725 CPLX3Q8WVH0 158 aa12.46□□□□□ -0.41
SNIP1-204ENST00000638725 WASF1Q92558 559 aa12.46□□□□□ -0.41
SNIP1-204ENST00000638725 NAPBQ9H115 298 aa12.46□□□□□ -0.41
SNIP1-204ENST00000638725 AKR1B15C9JRZ8 316 aaPredicted RBP12.46□□□□□ -0.42
SNIP1-204ENST00000638725 MBD4O95243 580 aa12.46□□□□□ -0.42
SNIP1-204ENST00000638725 CCDC175P0C221 793 aa12.46□□□□□ -0.42
SNIP1-204ENST00000638725 ATF3P18847 181 aa12.46□□□□□ -0.42
SNIP1-204ENST00000638725 PLCD1P51178 756 aa12.46□□□□□ -0.42
SNIP1-204ENST00000638725 GYS2P54840 703 aa12.46□□□□□ -0.42
SNIP1-204ENST00000638725 STX17P56962 302 aa12.46□□□□□ -0.42
SNIP1-204ENST00000638725 RILPL1Q5EBL4 403 aa12.46□□□□□ -0.42
SNIP1-204ENST00000638725 KIF6Q6ZMV9 814 aa12.46□□□□□ -0.42
SNIP1-204ENST00000638725 TOM1L2Q6ZVM7 507 aa12.46□□□□□ -0.42
SNIP1-204ENST00000638725 ZNF512BQ96KM6 892 aaPredicted RBP12.46□□□□□ -0.42
SNIP1-204ENST00000638725 CSRNP2Q9H175 543 aa12.46□□□□□ -0.42
SNIP1-204ENST00000638725 TOMM22Q9NS69 142 aa12.46□□□□□ -0.42
SNIP1-204ENST00000638725 TNS3Q68CZ2 1445 aa12.45□□□□□ -0.42
SNIP1-204ENST00000638725 PAPPAQ13219 1627 aa12.45□□□□□ -0.42
SNIP1-204ENST00000638725 RTN1Q16799 776 aa12.45□□□□□ -0.42
SNIP1-204ENST00000638725 KLHL10Q6JEL2 608 aa12.45□□□□□ -0.42
SNIP1-204ENST00000638725 TRIM22Q8IYM9 498 aa12.45□□□□□ -0.42
SNIP1-204ENST00000638725 TRIML1Q8N9V2 468 aa12.45□□□□□ -0.42
SNIP1-204ENST00000638725 FOXP1Q9H334 677 aaPredicted RBP12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms