RNA–Protein interactions for RNA: ENST00000637107.1

CLN3-256, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,946 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-256ENST00000637107 TSGA10IPQ3SY00 556 aa20.43■□□□□ 0.86
CLN3-256ENST00000637107 MCMDC2Q4G0Z9 681 aa20.43■□□□□ 0.86
CLN3-256ENST00000637107 ZMYM1Q5SVZ6 1142 aa20.43■□□□□ 0.86
CLN3-256ENST00000637107 CDAN1Q8IWY9 1227 aa20.43■□□□□ 0.86
CLN3-256ENST00000637107 ZFPM1Q8IX07 1006 aa20.43■□□□□ 0.86
CLN3-256ENST00000637107 IDI2Q9BXS1 227 aa20.43■□□□□ 0.86
CLN3-256ENST00000637107 TMEM39BQ9GZU3 492 aa20.43■□□□□ 0.86
CLN3-256ENST00000637107 PLCG2P16885 1265 aa20.43■□□□□ 0.86
CLN3-256ENST00000637107 TICAM2Q86XR7 235 aa20.43■□□□□ 0.86
CLN3-256ENST00000637107 TGFBRAP1Q8WUH2 860 aa20.43■□□□□ 0.86
CLN3-256ENST00000637107 AIDAQ96BJ3 306 aa20.43■□□□□ 0.86
CLN3-256ENST00000637107 ZSCAN21Q9Y5A6 473 aaPredicted RBP20.43■□□□□ 0.86
CLN3-256ENST00000637107 TNFAIP1Q13829 316 aa20.42■□□□□ 0.86
CLN3-256ENST00000637107 FKBP1CQ5VVH2 108 aa20.42■□□□□ 0.86
CLN3-256ENST00000637107 CCDC129Q6ZRS4 1044 aa20.42■□□□□ 0.86
CLN3-256ENST00000637107 SH2B1Q9NRF2 756 aaPredicted RBP20.42■□□□□ 0.86
CLN3-256ENST00000637107 FSTL1Q12841 308 aa20.41■□□□□ 0.86
CLN3-256ENST00000637107 CHAMP1Q96JM3 812 aa20.41■□□□□ 0.86
CLN3-256ENST00000637107 ISY1Q9ULR0 285 aaKnown RBP20.41■□□□□ 0.86
CLN3-256ENST00000637107 WDR33Q9C0J8 1336 aaKnown RBP20.41■□□□□ 0.86
CLN3-256ENST00000637107 PRKAB2O43741 272 aa20.41■□□□□ 0.86
CLN3-256ENST00000637107 PRPF40AO75400 957 aaKnown RBP20.41■□□□□ 0.86
CLN3-256ENST00000637107 XRCC6P12956 609 aaKnown RBP eCLIP20.41■□□□□ 0.86
CLN3-256ENST00000637107 FAM83AQ86UY5 434 aa20.41■□□□□ 0.86
CLN3-256ENST00000637107 MAPKAPK5Q8IW41 473 aa20.41■□□□□ 0.86
CLN3-256ENST00000637107 SDR42E1Q8WUS8 393 aa20.41■□□□□ 0.86
CLN3-256ENST00000637107 TAF6LQ9Y6J9 622 aa20.41■□□□□ 0.86
CLN3-256ENST00000637107 U3KPZ7 1027 aaPredicted RBP20.41■□□□□ 0.86
CLN3-256ENST00000637107 FOCADQ5VW36 1801 aa20.41■□□□□ 0.86
CLN3-256ENST00000637107 PASKQ96RG2 1323 aa20.4■□□□□ 0.86
CLN3-256ENST00000637107 GPAA1O43292 621 aa20.4■□□□□ 0.86
CLN3-256ENST00000637107 TNNI2P48788 182 aa20.4■□□□□ 0.86
CLN3-256ENST00000637107 BLOC1S2Q6QNY1 142 aa20.4■□□□□ 0.86
CLN3-256ENST00000637107 CDCA5Q96FF9 252 aa20.4■□□□□ 0.86
CLN3-256ENST00000637107 TEPSINQ96N21 525 aa20.4■□□□□ 0.86
CLN3-256ENST00000637107 STRBPQ96SI9 672 aaKnown RBP20.4■□□□□ 0.86
CLN3-256ENST00000637107 ALDH8A1Q9H2A2 487 aaPredicted RBP20.4■□□□□ 0.86
CLN3-256ENST00000637107 HELLSQ9NRZ9 838 aa20.4■□□□□ 0.86
CLN3-256ENST00000637107 RPS6KB1P23443 525 aa20.39■□□□□ 0.86
CLN3-256ENST00000637107 CERS3Q8IU89 383 aa20.39■□□□□ 0.86
CLN3-256ENST00000637107 FAM151AQ8WW52 585 aa20.39■□□□□ 0.86
CLN3-256ENST00000637107 ZNF408Q9H9D4 720 aa20.39■□□□□ 0.86
CLN3-256ENST00000637107 SMC3Q9UQE7 1217 aa20.39■□□□□ 0.86
CLN3-256ENST00000637107 FLT1P17948 1338 aa20.39■□□□□ 0.85
CLN3-256ENST00000637107 USP5P45974 858 aa20.39■□□□□ 0.85
CLN3-256ENST00000637107 MRE11P49959 708 aa20.39■□□□□ 0.85
CLN3-256ENST00000637107 COL9A3Q14050 684 aaPredicted RBP20.39■□□□□ 0.85
CLN3-256ENST00000637107 NBPF12Q5TAG4 269 aaPredicted RBP20.39■□□□□ 0.85
CLN3-256ENST00000637107 CCDC83Q8IWF9 413 aa20.39■□□□□ 0.85
CLN3-256ENST00000637107 CRNKL1Q9BZJ0 848 aaKnown RBP20.39■□□□□ 0.85
CLN3-256ENST00000637107 ENTPD3O75355 529 aa20.38■□□□□ 0.85
CLN3-256ENST00000637107 KRT32Q14532 448 aa20.38■□□□□ 0.85
CLN3-256ENST00000637107 SH3BP5LQ7L8J4 393 aa20.38■□□□□ 0.85
CLN3-256ENST00000637107 OSBPL5Q9H0X9 879 aaPredicted RBP20.38■□□□□ 0.85
CLN3-256ENST00000637107 PPP2R3BQ9Y5P8 575 aa20.38■□□□□ 0.85
CLN3-256ENST00000637107 DDTLA6NHG4 134 aaPredicted RBP20.37■□□□□ 0.85
CLN3-256ENST00000637107 ST3GAL1Q11201 340 aa20.37■□□□□ 0.85
CLN3-256ENST00000637107 ME3Q16798 604 aa20.37■□□□□ 0.85
CLN3-256ENST00000637107 GAS2L3Q86XJ1 694 aa20.37■□□□□ 0.85
CLN3-256ENST00000637107 SLC4A4Q9Y6R1 1079 aa20.37■□□□□ 0.85
CLN3-256ENST00000637107 NPM3O75607 178 aaKnown RBP20.37■□□□□ 0.85
CLN3-256ENST00000637107 NCLP19338 710 aaKnown RBP20.37■□□□□ 0.85
CLN3-256ENST00000637107 SLC4A8Q2Y0W8 1093 aa20.37■□□□□ 0.85
CLN3-256ENST00000637107 CST9Q5W186 159 aa20.37■□□□□ 0.85
CLN3-256ENST00000637107 MKRN1Q9UHC7 482 aaKnown RBP20.37■□□□□ 0.85
CLN3-256ENST00000637107 SAP30BPQ9UHR5 308 aaKnown RBP20.37■□□□□ 0.85
CLN3-256ENST00000637107 TPCN1Q9ULQ1 816 aa20.37■□□□□ 0.85
CLN3-256ENST00000637107 FZD1Q9UP38 647 aa20.37■□□□□ 0.85
CLN3-256ENST00000637107 TRPM7Q96QT4 1865 aa20.36■□□□□ 0.85
CLN3-256ENST00000637107 ANKRD1Q15327 319 aa20.36■□□□□ 0.85
CLN3-256ENST00000637107 ZSCAN29Q8IWY8 852 aaPredicted RBP20.36■□□□□ 0.85
CLN3-256ENST00000637107 GRPEL1Q9HAV7 217 aa20.36■□□□□ 0.85
CLN3-256ENST00000637107 BAZ2AQ9UIF9 1905 aaKnown RBP20.36■□□□□ 0.85
CLN3-256ENST00000637107 CELF2O95319 508 aaKnown RBP20.35■□□□□ 0.85
CLN3-256ENST00000637107 GPT2Q8TD30 523 aa20.35■□□□□ 0.85
CLN3-256ENST00000637107 DCP1AQ9NPI6 582 aaPredicted RBP20.35■□□□□ 0.85
CLN3-256ENST00000637107 SSC5DA1L4H1 1573 aa20.35■□□□□ 0.85
CLN3-256ENST00000637107 MYH1P12882 1939 aa20.35■□□□□ 0.85
CLN3-256ENST00000637107 SLURP2P0DP57 97 aa20.35■□□□□ 0.85
CLN3-256ENST00000637107 SYT1P21579 422 aa20.35■□□□□ 0.85
CLN3-256ENST00000637107 TOB2Q14106 344 aaPredicted RBP20.35■□□□□ 0.85
CLN3-256ENST00000637107 DSCC1Q9BVC3 393 aa20.35■□□□□ 0.85
CLN3-256ENST00000637107 GSG1L2A8MUP6 293 aa20.34■□□□□ 0.85
CLN3-256ENST00000637107 STX6O43752 255 aa20.34■□□□□ 0.85
CLN3-256ENST00000637107 ZSCAN22P10073 491 aaPredicted RBP20.34■□□□□ 0.85
CLN3-256ENST00000637107 GJB2P29033 226 aa20.34■□□□□ 0.85
CLN3-256ENST00000637107 PRKG1Q13976 671 aa20.34■□□□□ 0.85
CLN3-256ENST00000637107 CAVIN1Q6NZI2 390 aaKnown RBP20.34■□□□□ 0.85
CLN3-256ENST00000637107 NECAB1Q8N987 351 aa20.34■□□□□ 0.85
CLN3-256ENST00000637107 TCEANC2Q96MN5 208 aa20.34■□□□□ 0.85
CLN3-256ENST00000637107 CSRNP1Q96S65 589 aa20.34■□□□□ 0.85
CLN3-256ENST00000637107 NAV1Q8NEY1 1877 aa20.34■□□□□ 0.85
CLN3-256ENST00000637107 FOXP2O15409 715 aa20.33■□□□□ 0.85
CLN3-256ENST00000637107 CYP21A2P08686 494 aa20.33■□□□□ 0.85
CLN3-256ENST00000637107 C1QTNF8P60827 252 aa20.33■□□□□ 0.85
CLN3-256ENST00000637107 NEK1Q96PY6 1258 aa20.33■□□□□ 0.85
CLN3-256ENST00000637107 ATP8A2Q9NTI2 1148 aa20.33■□□□□ 0.85
CLN3-256ENST00000637107 ATRNL1Q5VV63 1379 aa20.33■□□□□ 0.84
CLN3-256ENST00000637107 EVX2Q03828 476 aa20.33■□□□□ 0.84
CLN3-256ENST00000637107 SUPT20HL1Q3ZLR7 823 aa20.33■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms