RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 KIF28PB7ZC32 967 aa12.47□□□□□ -0.41
CLN3-244ENST00000636147 N4BP1O75113 896 aaKnown RBP12.47□□□□□ -0.41
CLN3-244ENST00000636147 INPP5BP32019 993 aa12.47□□□□□ -0.41
CLN3-244ENST00000636147 EPS15P42566 896 aa12.47□□□□□ -0.41
CLN3-244ENST00000636147 CTDSPL2Q05D32 466 aa12.47□□□□□ -0.41
CLN3-244ENST00000636147 KIF5AQ12840 1032 aa12.47□□□□□ -0.41
CLN3-244ENST00000636147 ZMYM1Q5SVZ6 1142 aa12.47□□□□□ -0.41
CLN3-244ENST00000636147 FCHSD1Q86WN1 690 aa12.47□□□□□ -0.41
CLN3-244ENST00000636147 IFNL2Q8IZJ0 200 aa12.47□□□□□ -0.41
CLN3-244ENST00000636147 MIGA1Q8NAN2 632 aa12.47□□□□□ -0.41
CLN3-244ENST00000636147 BCAS4Q8TDM0 211 aa12.47□□□□□ -0.41
CLN3-244ENST00000636147 MYO3AQ8NEV4 1616 aa12.47□□□□□ -0.41
CLN3-244ENST00000636147 SETD1BQ9UPS6 1966 aaKnown RBP12.47□□□□□ -0.41
CLN3-244ENST00000636147 CD163L1Q9NR16 1453 aa12.47□□□□□ -0.41
CLN3-244ENST00000636147 EIF3CLB5ME19 914 aaKnown RBP12.47□□□□□ -0.41
CLN3-244ENST00000636147 LTKP29376 864 aa12.47□□□□□ -0.41
CLN3-244ENST00000636147 CYLC1P35663 651 aaPredicted RBP12.47□□□□□ -0.41
CLN3-244ENST00000636147 CACNA2D4Q7Z3S7 1137 aa12.47□□□□□ -0.41
CLN3-244ENST00000636147 TMTC1Q8IUR5 882 aa12.47□□□□□ -0.41
CLN3-244ENST00000636147 EIF3CQ99613 913 aaKnown RBP12.47□□□□□ -0.41
CLN3-244ENST00000636147 ZHX3Q9H4I2 956 aa12.47□□□□□ -0.41
CLN3-244ENST00000636147 STRN4Q9NRL3 753 aa12.47□□□□□ -0.41
CLN3-244ENST00000636147 MAN1B1Q9UKM7 699 aa12.47□□□□□ -0.41
CLN3-244ENST00000636147 WWC3Q9ULE0 1092 aa12.47□□□□□ -0.41
CLN3-244ENST00000636147 KAT6BQ8WYB5 2073 aa12.47□□□□□ -0.41
CLN3-244ENST00000636147 UBA7P41226 1012 aa12.47□□□□□ -0.41
CLN3-244ENST00000636147 SPAG1Q07617 926 aa12.47□□□□□ -0.41
CLN3-244ENST00000636147 RILPL1Q5EBL4 403 aa12.47□□□□□ -0.41
CLN3-244ENST00000636147 CT47A1Q5JQC4 288 aaPredicted RBP12.47□□□□□ -0.41
CLN3-244ENST00000636147 CYP26C1Q6V0L0 522 aa12.47□□□□□ -0.41
CLN3-244ENST00000636147 TEX33O43247 280 aa12.46□□□□□ -0.41
CLN3-244ENST00000636147 CLSTN1O94985 981 aa12.46□□□□□ -0.41
CLN3-244ENST00000636147 MCM7P33993 719 aa12.46□□□□□ -0.41
CLN3-244ENST00000636147 CTCFLQ8NI51 663 aaPredicted RBP12.46□□□□□ -0.41
CLN3-244ENST00000636147 CPS1P31327 1500 aa12.46□□□□□ -0.41
CLN3-244ENST00000636147 TUBBP07437 444 aa12.46□□□□□ -0.41
CLN3-244ENST00000636147 ADORA1P30542 326 aa12.46□□□□□ -0.41
CLN3-244ENST00000636147 ATP1A2P50993 1020 aa12.46□□□□□ -0.41
CLN3-244ENST00000636147 TOM1L2Q6ZVM7 507 aa12.46□□□□□ -0.41
CLN3-244ENST00000636147 SRLQ86TD4 932 aa12.46□□□□□ -0.41
CLN3-244ENST00000636147 FAM71BQ8TC56 605 aa12.46□□□□□ -0.41
CLN3-244ENST00000636147 CCDC42Q96M95 316 aa12.46□□□□□ -0.41
CLN3-244ENST00000636147 SAMM50Q9Y512 469 aa12.46□□□□□ -0.41
CLN3-244ENST00000636147 MRFAP1Q9Y605 127 aa12.46□□□□□ -0.41
CLN3-244ENST00000636147 USP6P35125 1406 aa12.46□□□□□ -0.42
CLN3-244ENST00000636147 GOLGA6L7A0A1B0GV03 622 aa12.46□□□□□ -0.42
CLN3-244ENST00000636147 SASH3O75995 380 aa12.46□□□□□ -0.42
CLN3-244ENST00000636147 A1BGP04217 495 aa12.46□□□□□ -0.42
CLN3-244ENST00000636147 NR5A1Q13285 461 aa12.46□□□□□ -0.42
CLN3-244ENST00000636147 NOSTRINQ8IVI9 506 aa12.46□□□□□ -0.42
CLN3-244ENST00000636147 CDK5RAP3Q96JB5 506 aa12.46□□□□□ -0.42
CLN3-244ENST00000636147 LCMT1Q9UIC8 334 aa12.46□□□□□ -0.42
CLN3-244ENST00000636147 ICE2Q659A1 982 aa12.45□□□□□ -0.42
CLN3-244ENST00000636147 TAX1BP1Q86VP1 789 aa12.45□□□□□ -0.42
CLN3-244ENST00000636147 SAR1BQ9Y6B6 198 aa12.45□□□□□ -0.42
CLN3-244ENST00000636147 TNRQ92752 1358 aa12.45□□□□□ -0.42
CLN3-244ENST00000636147 STAT6P42226 847 aa12.45□□□□□ -0.42
CLN3-244ENST00000636147 REXO1L1PQ8IX06 675 aa12.45□□□□□ -0.42
CLN3-244ENST00000636147 MMRN2Q9H8L6 949 aa12.45□□□□□ -0.42
CLN3-244ENST00000636147 MRPL44Q9H9J2 332 aaKnown RBP12.45□□□□□ -0.42
CLN3-244ENST00000636147 SLC4A4Q9Y6R1 1079 aa12.45□□□□□ -0.42
CLN3-244ENST00000636147 VSNL1P62760 191 aa12.45□□□□□ -0.42
CLN3-244ENST00000636147 TUBB4BP68371 445 aa12.45□□□□□ -0.42
CLN3-244ENST00000636147 CCDC178Q5BJE1 867 aa12.45□□□□□ -0.42
CLN3-244ENST00000636147 SHC4Q6S5L8 630 aa12.45□□□□□ -0.42
CLN3-244ENST00000636147 VPS54Q9P1Q0 977 aa12.45□□□□□ -0.42
CLN3-244ENST00000636147 TRMT112Q9UI30 125 aaKnown RBP12.45□□□□□ -0.42
CLN3-244ENST00000636147 FDPSP14324 419 aaKnown RBP12.44□□□□□ -0.42
CLN3-244ENST00000636147 HPDP32754 393 aaPredicted RBP12.44□□□□□ -0.42
CLN3-244ENST00000636147 GNGT1P63211 74 aa12.44□□□□□ -0.42
CLN3-244ENST00000636147 KRT83P78385 493 aa12.44□□□□□ -0.42
CLN3-244ENST00000636147 MAP3K9P80192 1104 aa12.44□□□□□ -0.42
CLN3-244ENST00000636147 CCDC91Q7Z6B0 441 aa12.44□□□□□ -0.42
CLN3-244ENST00000636147 ANKRD18AQ8IVF6 992 aa12.44□□□□□ -0.42
CLN3-244ENST00000636147 GSPT2Q8IYD1 628 aaKnown RBP12.44□□□□□ -0.42
CLN3-244ENST00000636147 EHBP1Q8NDI1 1231 aa12.44□□□□□ -0.42
CLN3-244ENST00000636147 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP12.44□□□□□ -0.42
CLN3-244ENST00000636147 EFCC1Q9HA90 598 aa12.44□□□□□ -0.42
CLN3-244ENST00000636147 INCENPQ9NQS7 918 aa12.44□□□□□ -0.42
CLN3-244ENST00000636147 USP42Q9H9J4 1324 aaKnown RBP12.44□□□□□ -0.42
CLN3-244ENST00000636147 OPA1O60313 960 aa12.44□□□□□ -0.42
CLN3-244ENST00000636147 MBD4O95243 580 aa12.44□□□□□ -0.42
CLN3-244ENST00000636147 ARID5AQ03989 594 aa12.44□□□□□ -0.42
CLN3-244ENST00000636147 WHAMMP3Q1A5X7 153 aa12.44□□□□□ -0.42
CLN3-244ENST00000636147 KCTD16Q68DU8 428 aa12.44□□□□□ -0.42
CLN3-244ENST00000636147 CATIPQ7Z7H3 387 aa12.44□□□□□ -0.42
CLN3-244ENST00000636147 MAGEB6Q8N7X4 407 aa12.44□□□□□ -0.42
CLN3-244ENST00000636147 ANKRD18BA2A2Z9 1011 aa12.44□□□□□ -0.42
CLN3-244ENST00000636147 SRGAP2O75044 1071 aa12.44□□□□□ -0.42
CLN3-244ENST00000636147 ZPR1O75312 459 aa12.44□□□□□ -0.42
CLN3-244ENST00000636147 TACC1O75410 805 aa12.44□□□□□ -0.42
CLN3-244ENST00000636147 PRDM1O75626 825 aa12.44□□□□□ -0.42
CLN3-244ENST00000636147 TFRCP02786 760 aaKnown RBP12.44□□□□□ -0.42
CLN3-244ENST00000636147 TSGA10IPQ3SY00 556 aa12.44□□□□□ -0.42
CLN3-244ENST00000636147 APOA5Q6Q788 366 aa12.44□□□□□ -0.42
CLN3-244ENST00000636147 IQCA1Q86XH1 822 aa12.44□□□□□ -0.42
CLN3-244ENST00000636147 TICAM2Q86XR7 235 aa12.44□□□□□ -0.42
CLN3-244ENST00000636147 IQUBQ8NA54 791 aa12.44□□□□□ -0.42
CLN3-244ENST00000636147 RIN2Q8WYP3 895 aaPredicted RBP12.44□□□□□ -0.42
CLN3-244ENST00000636147 JAKMIP2Q96AA8 810 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms