RNA–Protein interactions for RNA: ENST00000627000.1

CHRNA4-209, Transcript of cholinergic receptor nicotinic alpha 4 subunit, humanhuman

TSL 1 (best)

Gene CHRNA4, Length 2,192 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA4-209ENST00000627000 IL1R1P14778 569 aa22.84■■□□□ 1.25
CHRNA4-209ENST00000627000 TMED8Q6PL24 325 aaPredicted RBP22.84■■□□□ 1.25
CHRNA4-209ENST00000627000 BRAPQ7Z569 592 aa22.84■■□□□ 1.25
CHRNA4-209ENST00000627000 FANCBQ8NB91 859 aa22.84■■□□□ 1.25
CHRNA4-209ENST00000627000 GOLPH3LQ9H4A5 285 aa22.84■■□□□ 1.25
CHRNA4-209ENST00000627000 DDX19AQ9NUU7 478 aaKnown RBP22.84■■□□□ 1.25
CHRNA4-209ENST00000627000 MCM9Q9NXL9 1143 aa22.84■■□□□ 1.25
CHRNA4-209ENST00000627000 LTBP1Q14766 1721 aa22.84■■□□□ 1.25
CHRNA4-209ENST00000627000 STK36Q9NRP7 1315 aa22.83■■□□□ 1.25
CHRNA4-209ENST00000627000 NRXN2Q9P2S2 1712 aa22.83■■□□□ 1.25
CHRNA4-209ENST00000627000 C6orf229H3BNL8 230 aa22.83■■□□□ 1.25
CHRNA4-209ENST00000627000 CCAR1Q8IX12 1150 aaKnown RBP22.83■■□□□ 1.25
CHRNA4-209ENST00000627000 CKAP2LQ8IYA6 745 aa22.83■■□□□ 1.25
CHRNA4-209ENST00000627000 ARPP21Q9UBL0 812 aaPredicted RBP22.83■■□□□ 1.25
CHRNA4-209ENST00000627000 ME1P48163 572 aa22.83■■□□□ 1.24
CHRNA4-209ENST00000627000 MAP3K11Q16584 847 aa22.83■■□□□ 1.24
CHRNA4-209ENST00000627000 SBK1Q52WX2 424 aa22.83■■□□□ 1.24
CHRNA4-209ENST00000627000 OLFM4Q6UX06 510 aa22.83■■□□□ 1.24
CHRNA4-209ENST00000627000 NBPF11Q86T75 865 aa22.83■■□□□ 1.24
CHRNA4-209ENST00000627000 TNMDQ9H2S6 317 aa22.83■■□□□ 1.24
CHRNA4-209ENST00000627000 CLSTN2Q9H4D0 955 aa22.83■■□□□ 1.24
CHRNA4-209ENST00000627000 MKRN1Q9UHC7 482 aaKnown RBP22.83■■□□□ 1.24
CHRNA4-209ENST00000627000 PCP11498 1178 aaKnown RBP22.82■■□□□ 1.24
CHRNA4-209ENST00000627000 PRKCSHP14314 528 aaPredicted RBP22.82■■□□□ 1.24
CHRNA4-209ENST00000627000 FAM47AQ5JRC9 791 aa22.82■■□□□ 1.24
CHRNA4-209ENST00000627000 LINC00301Q8NCQ3 95 aa22.82■■□□□ 1.24
CHRNA4-209ENST00000627000 RRAGDQ9NQL2 400 aaPredicted RBP22.82■■□□□ 1.24
CHRNA4-209ENST00000627000 DLEC1Q9Y238 1755 aa22.82■■□□□ 1.24
CHRNA4-209ENST00000627000 ORC4O43929 436 aa22.82■■□□□ 1.24
CHRNA4-209ENST00000627000 NMT2O60551 498 aa22.82■■□□□ 1.24
CHRNA4-209ENST00000627000 HMGB2P26583 209 aaKnown RBP22.82■■□□□ 1.24
CHRNA4-209ENST00000627000 RXRBP28702 533 aa22.82■■□□□ 1.24
CHRNA4-209ENST00000627000 USP5P45974 858 aa22.82■■□□□ 1.24
CHRNA4-209ENST00000627000 MSL1Q68DK7 614 aa22.82■■□□□ 1.24
CHRNA4-209ENST00000627000 TRIM44Q96DX7 344 aaPredicted RBP22.82■■□□□ 1.24
CHRNA4-209ENST00000627000 PDLIM2Q96JY6 352 aa22.82■■□□□ 1.24
CHRNA4-209ENST00000627000 PCDHA7Q9UN72 937 aa22.82■■□□□ 1.24
CHRNA4-209ENST00000627000 MMP10P09238 476 aa22.81■■□□□ 1.24
CHRNA4-209ENST00000627000 SRGNP10124 158 aa22.81■■□□□ 1.24
CHRNA4-209ENST00000627000 GSTO1P78417 241 aa22.81■■□□□ 1.24
CHRNA4-209ENST00000627000 IFIT1BQ5T764 474 aaKnown RBP22.81■■□□□ 1.24
CHRNA4-209ENST00000627000 IQCA1Q86XH1 822 aa22.81■■□□□ 1.24
CHRNA4-209ENST00000627000 SP8Q8IXZ3 490 aa22.81■■□□□ 1.24
CHRNA4-209ENST00000627000 CRACR2BQ8N4Y2 399 aaPredicted RBP22.81■■□□□ 1.24
CHRNA4-209ENST00000627000 RGS22Q8NE09 1264 aa22.81■■□□□ 1.24
CHRNA4-209ENST00000627000 MROH7-TTC4A0A0A0MT08 1334 aa22.81■■□□□ 1.24
CHRNA4-209ENST00000627000 RCAN1P53805 252 aa22.8■■□□□ 1.24
CHRNA4-209ENST00000627000 POLR3EQ9NVU0 708 aa22.8■■□□□ 1.24
CHRNA4-209ENST00000627000 RIMBP2O15034 1052 aa22.8■■□□□ 1.24
CHRNA4-209ENST00000627000 TRIM29Q14134 588 aa22.8■■□□□ 1.24
CHRNA4-209ENST00000627000 STK38Q15208 465 aa22.8■■□□□ 1.24
CHRNA4-209ENST00000627000 RTFDC1Q9BY42 306 aaPredicted RBP22.8■■□□□ 1.24
CHRNA4-209ENST00000627000 CCDC196A0A1B0GTZ2 297 aa22.79■■□□□ 1.24
CHRNA4-209ENST00000627000 TRIM22Q8IYM9 498 aa22.79■■□□□ 1.24
CHRNA4-209ENST00000627000 TGFBRAP1Q8WUH2 860 aa22.79■■□□□ 1.24
CHRNA4-209ENST00000627000 ATP6V0A2Q9Y487 856 aa22.79■■□□□ 1.24
CHRNA4-209ENST00000627000 COL11A2P13942 1736 aaPredicted RBP22.79■■□□□ 1.24
CHRNA4-209ENST00000627000 BAG3O95817 575 aa22.79■■□□□ 1.24
CHRNA4-209ENST00000627000 CCDC192P0DO97 292 aa22.79■■□□□ 1.24
CHRNA4-209ENST00000627000 PPP4CP60510 307 aa22.79■■□□□ 1.24
CHRNA4-209ENST00000627000 MFSD14BQ5SR56 506 aa22.79■■□□□ 1.24
CHRNA4-209ENST00000627000 C12orf60Q5U649 245 aa22.79■■□□□ 1.24
CHRNA4-209ENST00000627000 RBM43Q6ZSC3 357 aaKnown RBP22.79■■□□□ 1.24
CHRNA4-209ENST00000627000 DYNLL2Q96FJ2 89 aa22.79■■□□□ 1.24
CHRNA4-209ENST00000627000 MYH6P13533 1939 aa22.78■■□□□ 1.24
CHRNA4-209ENST00000627000 TNS1Q9HBL0 1735 aaKnown RBP22.78■■□□□ 1.24
CHRNA4-209ENST00000627000 CDK5RAP2Q96SN8 1893 aa22.78■■□□□ 1.24
CHRNA4-209ENST00000627000 IGSF3O75054 1194 aa22.78■■□□□ 1.24
CHRNA4-209ENST00000627000 LDHCP07864 332 aa22.78■■□□□ 1.24
CHRNA4-209ENST00000627000 SLC3A2P08195 630 aaKnown RBP22.78■■□□□ 1.24
CHRNA4-209ENST00000627000 SNW1Q13573 536 aaKnown RBP22.78■■□□□ 1.24
CHRNA4-209ENST00000627000 GNL2Q13823 731 aaKnown RBP22.78■■□□□ 1.24
CHRNA4-209ENST00000627000 ANO1Q5XXA6 986 aa22.78■■□□□ 1.24
CHRNA4-209ENST00000627000 KCNJ14Q9UNX9 436 aa22.78■■□□□ 1.24
CHRNA4-209ENST00000627000 NAV1Q8NEY1 1877 aa22.78■■□□□ 1.24
CHRNA4-209ENST00000627000 YEATS4O95619 227 aa22.77■■□□□ 1.24
CHRNA4-209ENST00000627000 BTDP43251 543 aa22.77■■□□□ 1.24
CHRNA4-209ENST00000627000 PDE4BQ07343 736 aa22.77■■□□□ 1.24
CHRNA4-209ENST00000627000 TMC4Q7Z404 712 aa22.77■■□□□ 1.24
CHRNA4-209ENST00000627000 CATIPQ7Z7H3 387 aa22.77■■□□□ 1.24
CHRNA4-209ENST00000627000 KLHL34Q8N239 644 aa22.77■■□□□ 1.24
CHRNA4-209ENST00000627000 FSIP1Q8NA03 581 aa22.77■■□□□ 1.24
CHRNA4-209ENST00000627000 WASF1Q92558 559 aa22.77■■□□□ 1.24
CHRNA4-209ENST00000627000 GNL3Q9BVP2 549 aaKnown RBP eCLIP22.77■■□□□ 1.24
CHRNA4-209ENST00000627000 SPTLC2O15270 562 aa22.77■■□□□ 1.24
CHRNA4-209ENST00000627000 NPR1P16066 1061 aa22.77■■□□□ 1.24
CHRNA4-209ENST00000627000 U2AF2P26368 475 aaKnown RBP eCLIP22.77■■□□□ 1.24
CHRNA4-209ENST00000627000 TYRO3Q06418 890 aa22.77■■□□□ 1.24
CHRNA4-209ENST00000627000 TROAPQ12815 778 aa22.77■■□□□ 1.24
CHRNA4-209ENST00000627000 SF3A1Q15459 793 aaKnown RBP22.77■■□□□ 1.24
CHRNA4-209ENST00000627000 MAPKAPK5Q8IW41 473 aa22.77■■□□□ 1.24
CHRNA4-209ENST00000627000 ENGASEQ8NFI3 743 aa22.77■■□□□ 1.24
CHRNA4-209ENST00000627000 NOL10Q9BSC4 688 aaKnown RBP22.77■■□□□ 1.24
CHRNA4-209ENST00000627000 PARP3Q9Y6F1 533 aa22.77■■□□□ 1.24
CHRNA4-209ENST00000627000 MRVI1Q9Y6F6 885 aa22.77■■□□□ 1.24
CHRNA4-209ENST00000627000 PLEKHA8P1O95397 391 aa22.76■■□□□ 1.23
CHRNA4-209ENST00000627000 DEXIO95424 95 aa22.76■■□□□ 1.23
CHRNA4-209ENST00000627000 UVSSAQ2YD98 709 aa22.76■■□□□ 1.23
CHRNA4-209ENST00000627000 ADALQ6DHV7 355 aa22.76■■□□□ 1.23
CHRNA4-209ENST00000627000 CCDC73Q6ZRK6 1079 aa22.76■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms