RNA–Protein interactions for RNA: ENST00000620992.4

PTPDC1-204, Transcript of protein tyrosine phosphatase domain containing 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene PTPDC1, Length 4,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPDC1-204ENST00000620992 LRP10Q7Z4F1 713 aa9.42□□□□□ -0.9
PTPDC1-204ENST00000620992 CTNNBL1Q8WYA6 563 aaPredicted RBP9.42□□□□□ -0.9
PTPDC1-204ENST00000620992 CDCA7Q9BWT1 371 aaPredicted RBP9.42□□□□□ -0.9
PTPDC1-204ENST00000620992 RNF216Q9NWF9 866 aaPredicted RBP9.42□□□□□ -0.9
PTPDC1-204ENST00000620992 AATFQ9NY61 560 aaKnown RBP eCLIP9.42□□□□□ -0.9
PTPDC1-204ENST00000620992 ZNF335Q9H4Z2 1342 aaPredicted RBP9.42□□□□□ -0.9
PTPDC1-204ENST00000620992 CARMIL3Q8ND23 1372 aa9.42□□□□□ -0.9
PTPDC1-204ENST00000620992 HARSP12081 509 aaKnown RBP9.42□□□□□ -0.9
PTPDC1-204ENST00000620992 ADD1P35611 737 aaKnown RBP9.42□□□□□ -0.9
PTPDC1-204ENST00000620992 MTIF2P46199 727 aaKnown RBP9.42□□□□□ -0.9
PTPDC1-204ENST00000620992 EXOSC10Q01780 885 aaKnown RBP9.42□□□□□ -0.9
PTPDC1-204ENST00000620992 BICD1Q96G01 975 aa9.42□□□□□ -0.9
PTPDC1-204ENST00000620992 ARMT1Q9H993 441 aa9.42□□□□□ -0.9
PTPDC1-204ENST00000620992 CLIC4Q9Y696 253 aa9.42□□□□□ -0.9
PTPDC1-204ENST00000620992 USP27XA6NNY8 438 aa9.42□□□□□ -0.9
PTPDC1-204ENST00000620992 NDUFA8P51970 172 aa9.42□□□□□ -0.9
PTPDC1-204ENST00000620992 ARID5AQ03989 594 aa9.42□□□□□ -0.9
PTPDC1-204ENST00000620992 RTN1Q16799 776 aa9.42□□□□□ -0.9
PTPDC1-204ENST00000620992 KIAA0825Q8IV33 1275 aa9.42□□□□□ -0.9
PTPDC1-204ENST00000620992 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.42□□□□□ -0.92e-7■■■■■ 33.7
PTPDC1-204ENST00000620992 URB1O60287 2271 aaKnown RBP9.42□□□□□ -0.9
PTPDC1-204ENST00000620992 B4E1Z4 1266 aa9.41□□□□□ -0.9
PTPDC1-204ENST00000620992 CASP7P55210 303 aa9.41□□□□□ -0.9
PTPDC1-204ENST00000620992 CCDC178Q5BJE1 867 aa9.41□□□□□ -0.9
PTPDC1-204ENST00000620992 DPP8Q6V1X1 898 aaPredicted RBP9.41□□□□□ -0.9
PTPDC1-204ENST00000620992 SMAP1Q8IYB5 467 aaPredicted RBP9.41□□□□□ -0.9
PTPDC1-204ENST00000620992 XAGE2Q96GT9 111 aa9.41□□□□□ -0.9
PTPDC1-204ENST00000620992 JCADQ9P266 1359 aa9.41□□□□□ -0.9
PTPDC1-204ENST00000620992 FGAP02671 866 aa9.41□□□□□ -0.9
PTPDC1-204ENST00000620992 ZAP70P43403 619 aa9.41□□□□□ -0.9
PTPDC1-204ENST00000620992 SCNN1DP51172 638 aa9.41□□□□□ -0.9
PTPDC1-204ENST00000620992 SNW1Q13573 536 aaKnown RBP9.41□□□□□ -0.9
PTPDC1-204ENST00000620992 ZNF274Q96GC6 653 aaPredicted RBP9.41□□□□□ -0.9
PTPDC1-204ENST00000620992 RAB34Q9BZG1 259 aa9.41□□□□□ -0.9
PTPDC1-204ENST00000620992 SPTLC2O15270 562 aa9.41□□□□□ -0.9
PTPDC1-204ENST00000620992 GTF2IP78347 998 aa9.41□□□□□ -0.9
PTPDC1-204ENST00000620992 CCDC40Q4G0X9 1142 aa9.41□□□□□ -0.9
PTPDC1-204ENST00000620992 TMC6Q7Z403 805 aa9.41□□□□□ -0.9
PTPDC1-204ENST00000620992 CEP131Q9UPN4 1083 aa9.41□□□□□ -0.9
PTPDC1-204ENST00000620992 PAXBP1Q9Y5B6 917 aa9.41□□□□□ -0.9
PTPDC1-204ENST00000620992 PPP1R12BO60237 982 aaPredicted RBP9.4□□□□□ -0.9
PTPDC1-204ENST00000620992 MAEAQ7L5Y9 396 aa9.4□□□□□ -0.9
PTPDC1-204ENST00000620992 MAPKAPK5Q8IW41 473 aa9.4□□□□□ -0.9
PTPDC1-204ENST00000620992 CCDC191Q8NCU4 936 aa9.4□□□□□ -0.9
PTPDC1-204ENST00000620992 RFX7Q2KHR2 1363 aa9.4□□□□□ -0.9
PTPDC1-204ENST00000620992 BACH1O14867 736 aa9.4□□□□□ -0.9
PTPDC1-204ENST00000620992 SORBS3O60504 671 aa9.4□□□□□ -0.9
PTPDC1-204ENST00000620992 LMOD1P29536 600 aaPredicted RBP9.4□□□□□ -0.9
PTPDC1-204ENST00000620992 NF2P35240 595 aa9.4□□□□□ -0.9
PTPDC1-204ENST00000620992 STX17P56962 302 aa9.4□□□□□ -0.9
PTPDC1-204ENST00000620992 PRPF4BQ13523 1007 aaKnown RBP9.4□□□□□ -0.9
PTPDC1-204ENST00000620992 DPCR1Q3MIW9 517 aa9.4□□□□□ -0.9
PTPDC1-204ENST00000620992 SMIM5Q71RC9 77 aa9.4□□□□□ -0.9
PTPDC1-204ENST00000620992 MRFAP1L1Q96HT8 127 aa9.4□□□□□ -0.9
PTPDC1-204ENST00000620992 NYXQ9GZU5 481 aa9.4□□□□□ -0.9
PTPDC1-204ENST00000620992 IFNKQ9P0W0 207 aa9.4□□□□□ -0.9
PTPDC1-204ENST00000620992 DACH1Q9UI36 760 aa9.4□□□□□ -0.9
PTPDC1-204ENST00000620992 H0YIN7 160 aa9.4□□□□□ -0.9
PTPDC1-204ENST00000620992 FDPSP14324 419 aaKnown RBP9.4□□□□□ -0.9
PTPDC1-204ENST00000620992 HIBADHP31937 336 aaKnown RBP9.4□□□□□ -0.9
PTPDC1-204ENST00000620992 NCBP1Q09161 790 aaKnown RBP9.4□□□□□ -0.9
PTPDC1-204ENST00000620992 SCARF1Q14162 830 aa9.4□□□□□ -0.9
PTPDC1-204ENST00000620992 ARHGAP27Q6ZUM4 889 aa9.4□□□□□ -0.9
PTPDC1-204ENST00000620992 DHX40Q8IX18 779 aaKnown RBP9.4□□□□□ -0.9
PTPDC1-204ENST00000620992 RGS22Q8NE09 1264 aa9.4□□□□□ -0.9
PTPDC1-204ENST00000620992 PUS7LQ9H0K6 701 aaKnown RBP9.4□□□□□ -0.9
PTPDC1-204ENST00000620992 PALLDQ8WX93 1383 aa9.4□□□□□ -0.91
PTPDC1-204ENST00000620992 ADALQ6DHV7 355 aa9.4□□□□□ -0.91
PTPDC1-204ENST00000620992 KCNG4Q8TDN1 519 aa9.4□□□□□ -0.91
PTPDC1-204ENST00000620992 GPAA1O43292 621 aa9.39□□□□□ -0.91
PTPDC1-204ENST00000620992 CHMP2AO43633 222 aa9.39□□□□□ -0.91
PTPDC1-204ENST00000620992 NEMFO60524 1076 aa9.39□□□□□ -0.91
PTPDC1-204ENST00000620992 GYG1P46976 350 aa9.39□□□□□ -0.91
PTPDC1-204ENST00000620992 ATL3Q6DD88 541 aa9.39□□□□□ -0.91
PTPDC1-204ENST00000620992 ILDR1Q86SU0 546 aaPredicted RBP9.39□□□□□ -0.91
PTPDC1-204ENST00000620992 AIFM3Q96NN9 605 aa9.39□□□□□ -0.91
PTPDC1-204ENST00000620992 ARGLU1Q9NWB6 273 aaPredicted RBP9.39□□□□□ -0.91
PTPDC1-204ENST00000620992 C1orf167Q5SNV9 1468 aa9.39□□□□□ -0.91
PTPDC1-204ENST00000620992 SFPQP23246 707 aaKnown RBP eCLIP9.39□□□□□ -0.91
PTPDC1-204ENST00000620992 BAG6P46379 1132 aa9.39□□□□□ -0.91
PTPDC1-204ENST00000620992 RAD51AP2Q09MP3 1159 aa9.39□□□□□ -0.91
PTPDC1-204ENST00000620992 LINC00301Q8NCQ3 95 aa9.39□□□□□ -0.91
PTPDC1-204ENST00000620992 NUP88Q99567 741 aaPredicted RBP9.39□□□□□ -0.91
PTPDC1-204ENST00000620992 CCDC87Q9NVE4 849 aa9.39□□□□□ -0.91
PTPDC1-204ENST00000620992 CHD2O14647 1828 aaKnown RBP9.39□□□□□ -0.91
PTPDC1-204ENST00000620992 PPIP5K2O43314 1243 aa9.39□□□□□ -0.91
PTPDC1-204ENST00000620992 MCM7P33993 719 aa9.39□□□□□ -0.91
PTPDC1-204ENST00000620992 MYSM1Q5VVJ2 828 aa9.39□□□□□ -0.91
PTPDC1-204ENST00000620992 NSMFQ6X4W1 530 aa9.39□□□□□ -0.91
PTPDC1-204ENST00000620992 ENGASEQ8NFI3 743 aa9.39□□□□□ -0.91
PTPDC1-204ENST00000620992 CALML4Q96GE6 196 aa9.39□□□□□ -0.91
PTPDC1-204ENST00000620992 RTEL1Q9NZ71 1219 aa9.39□□□□□ -0.91
PTPDC1-204ENST00000620992 KIAA1468Q9P260 1216 aa9.39□□□□□ -0.91
PTPDC1-204ENST00000620992 RGPD5Q99666 1765 aa9.39□□□□□ -0.91
PTPDC1-204ENST00000620992 ZNF202O95125 648 aa9.38□□□□□ -0.91
PTPDC1-204ENST00000620992 CSPG5O95196 566 aa9.38□□□□□ -0.91
PTPDC1-204ENST00000620992 CDC25BP30305 580 aa9.38□□□□□ -0.91
PTPDC1-204ENST00000620992 SARM1Q6SZW1 724 aa9.38□□□□□ -0.91
PTPDC1-204ENST00000620992 FMR1NBQ8N0W7 255 aaPredicted RBP9.38□□□□□ -0.91
PTPDC1-204ENST00000620992 FBXO18Q8NFZ0 1043 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms