RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 LRRC2Q9BYS8 371 aa12.32□□□□□ -0.44
UPF3A-212ENST00000619079 ZSWIM4Q9H7M6 989 aa12.32□□□□□ -0.44
UPF3A-212ENST00000619079 FANCLQ9NW38 375 aa12.32□□□□□ -0.44
UPF3A-212ENST00000619079 PUF60Q9UHX1 559 aaKnown RBP12.32□□□□□ -0.44
UPF3A-212ENST00000619079 CEP83Q9Y592 693 aa12.32□□□□□ -0.44
UPF3A-212ENST00000619079 CTAGE15A4D2H0 777 aa12.32□□□□□ -0.44
UPF3A-212ENST00000619079 CTAGE9A4FU28 777 aa12.32□□□□□ -0.44
UPF3A-212ENST00000619079 ERLIN2O94905 339 aa12.32□□□□□ -0.44
UPF3A-212ENST00000619079 CTAGE8P0CG41 777 aa12.32□□□□□ -0.44
UPF3A-212ENST00000619079 CCT2P78371 535 aaKnown RBP12.32□□□□□ -0.44
UPF3A-212ENST00000619079 EXOSC10Q01780 885 aaKnown RBP12.32□□□□□ -0.44
UPF3A-212ENST00000619079 MAP9Q49MG5 647 aa12.32□□□□□ -0.44
UPF3A-212ENST00000619079 ANO1Q5XXA6 986 aa12.32□□□□□ -0.44
UPF3A-212ENST00000619079 WDR93Q6P2C0 686 aa12.32□□□□□ -0.44
UPF3A-212ENST00000619079 CTAGE6Q86UF2 777 aa12.32□□□□□ -0.44
UPF3A-212ENST00000619079 CTAGE4Q8IX94 777 aa12.32□□□□□ -0.44
UPF3A-212ENST00000619079 ANKRD20A12PQ8NF67 263 aa12.32□□□□□ -0.44
UPF3A-212ENST00000619079 TACO1Q9BSH4 297 aaKnown RBP12.32□□□□□ -0.44
UPF3A-212ENST00000619079 TLR7Q9NYK1 1049 aaKnown RBP12.32□□□□□ -0.44
UPF3A-212ENST00000619079 DACH1Q9UI36 760 aa12.32□□□□□ -0.44
UPF3A-212ENST00000619079 HOOK1Q9UJC3 728 aaKnown RBP12.32□□□□□ -0.44
UPF3A-212ENST00000619079 COL15A1P39059 1388 aa12.32□□□□□ -0.44
UPF3A-212ENST00000619079 PDIA3P30101 505 aaKnown RBP12.31□□□□□ -0.44
UPF3A-212ENST00000619079 MAP2K2P36507 400 aa12.31□□□□□ -0.44
UPF3A-212ENST00000619079 GOLGA8FQ08AF8 430 aa12.31□□□□□ -0.44
UPF3A-212ENST00000619079 GOLGA8DPQ0D2H9 430 aa12.31□□□□□ -0.44
UPF3A-212ENST00000619079 KARSQ15046 597 aaKnown RBP12.31□□□□□ -0.44
UPF3A-212ENST00000619079 MICALL1Q8N3F8 863 aa12.31□□□□□ -0.44
UPF3A-212ENST00000619079 FBXL16Q8N461 479 aa12.31□□□□□ -0.44
UPF3A-212ENST00000619079 CXorf56Q9H5V9 222 aa12.31□□□□□ -0.44
UPF3A-212ENST00000619079 INTS13Q9NVM9 706 aa12.31□□□□□ -0.44
UPF3A-212ENST00000619079 DBF4Q9UBU7 674 aaPredicted RBP12.31□□□□□ -0.44
UPF3A-212ENST00000619079 RNF40O75150 1001 aa12.31□□□□□ -0.44
UPF3A-212ENST00000619079 EIF4A1P60842 406 aaKnown RBP12.31□□□□□ -0.44
UPF3A-212ENST00000619079 SART3Q15020 963 aaKnown RBP12.31□□□□□ -0.44
UPF3A-212ENST00000619079 KIF4BQ2VIQ3 1234 aa12.31□□□□□ -0.44
UPF3A-212ENST00000619079 POTEDQ86YR6 584 aa12.31□□□□□ -0.44
UPF3A-212ENST00000619079 ELOA2Q8IYF1 753 aaPredicted RBP12.31□□□□□ -0.44
UPF3A-212ENST00000619079 UTYO14607 1347 aa12.3□□□□□ -0.44
UPF3A-212ENST00000619079 SH3TC1Q8TE82 1336 aa12.3□□□□□ -0.44
UPF3A-212ENST00000619079 TNS1Q9HBL0 1735 aaKnown RBP12.3□□□□□ -0.44
UPF3A-212ENST00000619079 FAM237AA0A1B0GTK4 181 aa12.3□□□□□ -0.44
UPF3A-212ENST00000619079 VSNL1P62760 191 aa12.3□□□□□ -0.44
UPF3A-212ENST00000619079 SLC39A14Q15043 492 aa12.3□□□□□ -0.44
UPF3A-212ENST00000619079 SLC27A3Q5K4L6 730 aa12.3□□□□□ -0.44
UPF3A-212ENST00000619079 KSR2Q6VAB6 950 aa12.3□□□□□ -0.44
UPF3A-212ENST00000619079 CAMKK2Q96RR4 588 aa12.3□□□□□ -0.44
UPF3A-212ENST00000619079 MRPL44Q9H9J2 332 aaKnown RBP12.3□□□□□ -0.44
UPF3A-212ENST00000619079 DONSONQ9NYP3 566 aa12.3□□□□□ -0.44
UPF3A-212ENST00000619079 MYO1AQ9UBC5 1043 aa12.3□□□□□ -0.44
UPF3A-212ENST00000619079 HPSEQ9Y251 543 aa12.3□□□□□ -0.44
UPF3A-212ENST00000619079 ZNF609O15014 1411 aa12.3□□□□□ -0.44
UPF3A-212ENST00000619079 AKR1B15C9JRZ8 316 aaPredicted RBP12.3□□□□□ -0.44
UPF3A-212ENST00000619079 GRM8O00222 908 aa12.3□□□□□ -0.44
UPF3A-212ENST00000619079 SOCS7O14512 581 aa12.3□□□□□ -0.44
UPF3A-212ENST00000619079 PPP6R2O75170 966 aa12.3□□□□□ -0.44
UPF3A-212ENST00000619079 STOX1Q6ZVD7 989 aa12.3□□□□□ -0.44
UPF3A-212ENST00000619079 SEC62Q99442 399 aaKnown RBP12.3□□□□□ -0.44
UPF3A-212ENST00000619079 DESI2Q9BSY9 194 aa12.3□□□□□ -0.44
UPF3A-212ENST00000619079 DSCC1Q9BVC3 393 aa12.3□□□□□ -0.44
UPF3A-212ENST00000619079 NCOA5Q9HCD5 579 aaKnown RBP12.3□□□□□ -0.44
UPF3A-212ENST00000619079 MAP3K2Q9Y2U5 619 aa12.3□□□□□ -0.44
UPF3A-212ENST00000619079 ADGRG1Q9Y653 693 aa12.3□□□□□ -0.44
UPF3A-212ENST00000619079 PHACTR2O75167 634 aa12.29□□□□□ -0.44
UPF3A-212ENST00000619079 POLR3DP05423 398 aaPredicted RBP12.29□□□□□ -0.44
UPF3A-212ENST00000619079 FDPSP14324 419 aaKnown RBP12.29□□□□□ -0.44
UPF3A-212ENST00000619079 ADKP55263 362 aaKnown RBP12.29□□□□□ -0.44
UPF3A-212ENST00000619079 SETQ01105 290 aaPredicted RBP12.29□□□□□ -0.44
UPF3A-212ENST00000619079 E2F4Q16254 413 aa12.29□□□□□ -0.44
UPF3A-212ENST00000619079 ISM2Q6H9L7 571 aa12.29□□□□□ -0.44
UPF3A-212ENST00000619079 LINS1Q8NG48 757 aa12.29□□□□□ -0.44
UPF3A-212ENST00000619079 LRRC4BQ9NT99 713 aa12.29□□□□□ -0.44
UPF3A-212ENST00000619079 RNF216Q9NWF9 866 aaPredicted RBP12.29□□□□□ -0.44
UPF3A-212ENST00000619079 RAI14Q9P0K7 980 aa12.29□□□□□ -0.44
UPF3A-212ENST00000619079 TTF2Q9UNY4 1162 aaKnown RBP12.29□□□□□ -0.44
UPF3A-212ENST00000619079 HEG1Q9ULI3 1381 aa12.29□□□□□ -0.44
UPF3A-212ENST00000619079 EBAG9O00559 213 aa12.29□□□□□ -0.44
UPF3A-212ENST00000619079 SHOX2O60902 331 aaPredicted RBP12.29□□□□□ -0.44
UPF3A-212ENST00000619079 SNRPA1P09661 255 aaKnown RBP12.29□□□□□ -0.44
UPF3A-212ENST00000619079 RHOXF2BP0C7M4 288 aa12.29□□□□□ -0.44
UPF3A-212ENST00000619079 CCDC102BQ68D86 513 aa12.29□□□□□ -0.44
UPF3A-212ENST00000619079 DNAJC10Q8IXB1 793 aa12.29□□□□□ -0.44
UPF3A-212ENST00000619079 PROM2Q8N271 834 aa12.29□□□□□ -0.44
UPF3A-212ENST00000619079 CCDC148Q8NFR7 591 aa12.29□□□□□ -0.44
UPF3A-212ENST00000619079 NAPGQ99747 312 aaPredicted RBP12.29□□□□□ -0.44
UPF3A-212ENST00000619079 RHOXF2Q9BQY4 288 aa12.29□□□□□ -0.44
UPF3A-212ENST00000619079 LZTFL1Q9NQ48 299 aa12.29□□□□□ -0.44
UPF3A-212ENST00000619079 MROH7-TTC4A0A0A0MT08 1334 aa12.28□□□□□ -0.44
UPF3A-212ENST00000619079 ZNF18P17022 549 aa12.28□□□□□ -0.44
UPF3A-212ENST00000619079 ZNF569Q5MCW4 686 aa12.28□□□□□ -0.44
UPF3A-212ENST00000619079 MLKLQ8NB16 471 aa12.28□□□□□ -0.44
UPF3A-212ENST00000619079 ENOX1Q8TC92 643 aaKnown RBP12.28□□□□□ -0.44
UPF3A-212ENST00000619079 SLC4A9Q96Q91 983 aa12.28□□□□□ -0.44
UPF3A-212ENST00000619079 SUGCTQ9HAC7 445 aa12.28□□□□□ -0.44
UPF3A-212ENST00000619079 PRAMEF22A3QJZ6 481 aa12.28□□□□□ -0.44
UPF3A-212ENST00000619079 LRRIQ3A6PVS8 624 aaPredicted RBP12.28□□□□□ -0.44
UPF3A-212ENST00000619079 PRPF6O94906 941 aaKnown RBP12.28□□□□□ -0.44
UPF3A-212ENST00000619079 STARD3NLO95772 234 aa12.28□□□□□ -0.44
UPF3A-212ENST00000619079 MNAT1P51948 309 aa12.28□□□□□ -0.44
UPF3A-212ENST00000619079 PNOCQ13519 176 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms