RNA–Protein interactions for RNA: ENST00000618469.1

BRCA1-228, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 718 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-228ENST00000618469 TRIOBPQ9H2D6 2365 aa19.41■□□□□ 0.7
BRCA1-228ENST00000618469 SPDYE5A6NIY4 337 aa19.41■□□□□ 0.7
BRCA1-228ENST00000618469 NPM3O75607 178 aaKnown RBP19.41■□□□□ 0.7
BRCA1-228ENST00000618469 ATP5JP18859 108 aa19.41■□□□□ 0.7
BRCA1-228ENST00000618469 DYNLL1P63167 89 aaKnown RBP19.41■□□□□ 0.7
BRCA1-228ENST00000618469 BRI3BPQ8WY22 251 aa19.41■□□□□ 0.7
BRCA1-228ENST00000618469 MS4A4AQ96JQ5 239 aa19.41■□□□□ 0.7
BRCA1-228ENST00000618469 ARHGAP39Q9C0H5 1083 aa19.41■□□□□ 0.7
BRCA1-228ENST00000618469 PAG1Q9NWQ8 432 aa19.41■□□□□ 0.7
BRCA1-228ENST00000618469 FLT1P17948 1338 aa19.41■□□□□ 0.7
BRCA1-228ENST00000618469 NAV1Q8NEY1 1877 aa19.41■□□□□ 0.7
BRCA1-228ENST00000618469 CEP290O15078 2479 aa19.41■□□□□ 0.7
BRCA1-228ENST00000618469 PPP4CP60510 307 aa19.4■□□□□ 0.7
BRCA1-228ENST00000618469 TAF1CQ15572 869 aaPredicted RBP19.4■□□□□ 0.7
BRCA1-228ENST00000618469 MAPKAPK5Q8IW41 473 aa19.4■□□□□ 0.7
BRCA1-228ENST00000618469 TGFBRAP1Q8WUH2 860 aa19.4■□□□□ 0.7
BRCA1-228ENST00000618469 GPATCH3Q96I76 525 aa19.4■□□□□ 0.7
BRCA1-228ENST00000618469 DDX60LQ5H9U9 1706 aaKnown RBP19.39■□□□□ 0.7
BRCA1-228ENST00000618469 CCL15-CCL14A0A0B4J2E2 113 aa19.39■□□□□ 0.69
BRCA1-228ENST00000618469 TESPA1A2RU30 521 aaPredicted RBP19.39■□□□□ 0.69
BRCA1-228ENST00000618469 SLURP2P0DP57 97 aa19.39■□□□□ 0.69
BRCA1-228ENST00000618469 PDE6AP16499 860 aa19.39■□□□□ 0.69
BRCA1-228ENST00000618469 CCL15Q16663 113 aa19.39■□□□□ 0.69
BRCA1-228ENST00000618469 TSHZ3Q63HK5 1081 aa19.39■□□□□ 0.69
BRCA1-228ENST00000618469 ERO1BQ86YB8 467 aa19.39■□□□□ 0.69
BRCA1-228ENST00000618469 FAM43AQ8N2R8 423 aa19.39■□□□□ 0.69
BRCA1-228ENST00000618469 HAUS7Q99871 368 aa19.39■□□□□ 0.69
BRCA1-228ENST00000618469 ECHDC1Q9NTX5 307 aa19.39■□□□□ 0.69
BRCA1-228ENST00000618469 ZNF112Q9UJU3 913 aa19.39■□□□□ 0.69
BRCA1-228ENST00000618469 SUPT16HQ9Y5B9 1047 aaKnown RBP19.39■□□□□ 0.69
BRCA1-228ENST00000618469 ATAD5Q96QE3 1844 aa19.39■□□□□ 0.69
BRCA1-228ENST00000618469 FAM196BA6NMK8 535 aa19.38■□□□□ 0.69
BRCA1-228ENST00000618469 MYH1P12882 1939 aa19.38■□□□□ 0.69
BRCA1-228ENST00000618469 NOL9Q5SY16 702 aaKnown RBP19.38■□□□□ 0.69
BRCA1-228ENST00000618469 SLC9C2Q5TAH2 1124 aa19.38■□□□□ 0.69
BRCA1-228ENST00000618469 TMED8Q6PL24 325 aaPredicted RBP19.38■□□□□ 0.69
BRCA1-228ENST00000618469 CHRDL2Q6WN34 429 aa19.38■□□□□ 0.69
BRCA1-228ENST00000618469 NBPF11Q86T75 865 aa19.38■□□□□ 0.69
BRCA1-228ENST00000618469 ZNF532Q9HCE3 1301 aa19.37■□□□□ 0.69
BRCA1-228ENST00000618469 PPIL2Q13356 520 aa19.37■□□□□ 0.69
BRCA1-228ENST00000618469 AAMPQ13685 434 aa19.37■□□□□ 0.69
BRCA1-228ENST00000618469 CERS3Q8IU89 383 aa19.37■□□□□ 0.69
BRCA1-228ENST00000618469 EXOC6Q8TAG9 804 aa19.37■□□□□ 0.69
BRCA1-228ENST00000618469 ZFYVE28Q9HCC9 887 aa19.37■□□□□ 0.69
BRCA1-228ENST00000618469 SZT2Q5T011 3432 aa19.36■□□□□ 0.69
BRCA1-228ENST00000618469 PHF20L1A8MW92 1017 aa19.36■□□□□ 0.69
BRCA1-228ENST00000618469 GTF2A2P52657 109 aa19.36■□□□□ 0.69
BRCA1-228ENST00000618469 HDAC1Q13547 482 aaPredicted RBP19.36■□□□□ 0.69
BRCA1-228ENST00000618469 SCYL3Q8IZE3 742 aa19.36■□□□□ 0.69
BRCA1-228ENST00000618469 XPO5Q9HAV4 1204 aaKnown RBP eCLIP19.36■□□□□ 0.69
BRCA1-228ENST00000618469 MAGEB6P1A0A0J9YX57 407 aa19.35■□□□□ 0.69
BRCA1-228ENST00000618469 IRF6O14896 467 aa19.35■□□□□ 0.69
BRCA1-228ENST00000618469 USP5P45974 858 aa19.35■□□□□ 0.69
BRCA1-228ENST00000618469 PPATQ06203 517 aa19.35■□□□□ 0.69
BRCA1-228ENST00000618469 RIOK1Q9BRS2 568 aaKnown RBP19.35■□□□□ 0.69
BRCA1-228ENST00000618469 DDX24Q9GZR7 859 aaKnown RBP eCLIP19.35■□□□□ 0.69
BRCA1-228ENST00000618469 DHX36Q9H2U1 1008 aaKnown RBP19.35■□□□□ 0.69
BRCA1-228ENST00000618469 ZBTB47Q9UFB7 747 aaPredicted RBP19.35■□□□□ 0.69
BRCA1-228ENST00000618469 SAP30BPQ9UHR5 308 aaKnown RBP19.35■□□□□ 0.69
BRCA1-228ENST00000618469 TCRBV5S4A2TA0A5A2 114 aa19.34■□□□□ 0.69
BRCA1-228ENST00000618469 MAP3K10Q02779 954 aa19.34■□□□□ 0.69
BRCA1-228ENST00000618469 MTFR1Q15390 333 aa19.34■□□□□ 0.69
BRCA1-228ENST00000618469 OTUD7AQ8TE49 926 aaPredicted RBP19.34■□□□□ 0.69
BRCA1-228ENST00000618469 PICK1Q9NRD5 415 aa19.34■□□□□ 0.69
BRCA1-228ENST00000618469 PHIPQ8WWQ0 1821 aa19.34■□□□□ 0.69
BRCA1-228ENST00000618469 TBC1D12O60347 775 aa19.33■□□□□ 0.68
BRCA1-228ENST00000618469 ADD2P35612 726 aa19.33■□□□□ 0.68
BRCA1-228ENST00000618469 SNAPC2Q13487 334 aa19.33■□□□□ 0.68
BRCA1-228ENST00000618469 DPF3Q92784 378 aa19.33■□□□□ 0.68
BRCA1-228ENST00000618469 RBM27Q9P2N5 1060 aaKnown RBP19.33■□□□□ 0.68
BRCA1-228ENST00000618469 PI4KBQ9UBF8 816 aa19.33■□□□□ 0.68
BRCA1-228ENST00000618469 HERC5Q9UII4 1024 aaKnown RBP19.33■□□□□ 0.68
BRCA1-228ENST00000618469 PALD1Q9ULE6 856 aa19.33■□□□□ 0.68
BRCA1-228ENST00000618469 TTC41PQ6P2S7 1318 aa19.32■□□□□ 0.68
BRCA1-228ENST00000618469 PTPRFP10586 1907 aa19.32■□□□□ 0.68
BRCA1-228ENST00000618469 CTNND1O60716 968 aaKnown RBP19.32■□□□□ 0.68
BRCA1-228ENST00000618469 HLA-DOAP06340 250 aa19.32■□□□□ 0.68
BRCA1-228ENST00000618469 CETPP11597 493 aa19.32■□□□□ 0.68
BRCA1-228ENST00000618469 SLFNL1Q499Z3 407 aa19.32■□□□□ 0.68
BRCA1-228ENST00000618469 ANKRD45Q5TZF3 282 aa19.32■□□□□ 0.68
BRCA1-228ENST00000618469 LCORLQ8N3X6 602 aa19.32■□□□□ 0.68
BRCA1-228ENST00000618469 CRACR2BQ8N4Y2 399 aaPredicted RBP19.32■□□□□ 0.68
BRCA1-228ENST00000618469 TRIM34Q9BYJ4 488 aa19.32■□□□□ 0.68
BRCA1-228ENST00000618469 FRMD4AQ9P2Q2 1039 aaPredicted RBP19.32■□□□□ 0.68
BRCA1-228ENST00000618469 CHGBP05060 677 aa19.31■□□□□ 0.68
BRCA1-228ENST00000618469 PTPRAP18433 802 aa19.31■□□□□ 0.68
BRCA1-228ENST00000618469 MX1P20591 662 aa19.31■□□□□ 0.68
BRCA1-228ENST00000618469 IRX6P78412 446 aaPredicted RBP19.31■□□□□ 0.68
BRCA1-228ENST00000618469 ARHGEF6Q15052 776 aa19.31■□□□□ 0.68
BRCA1-228ENST00000618469 CRNKL1Q9BZJ0 848 aaKnown RBP19.31■□□□□ 0.68
BRCA1-228ENST00000618469 DNAJC18Q9H819 358 aa19.31■□□□□ 0.68
BRCA1-228ENST00000618469 KCNH4Q9UQ05 1017 aa19.31■□□□□ 0.68
BRCA1-228ENST00000618469 BTBD19C9JJ37 291 aa19.3■□□□□ 0.68
BRCA1-228ENST00000618469 ERC2O15083 957 aa19.3■□□□□ 0.68
BRCA1-228ENST00000618469 MBD4O95243 580 aa19.3■□□□□ 0.68
BRCA1-228ENST00000618469 LACTBP83111 547 aaPredicted RBP19.3■□□□□ 0.68
BRCA1-228ENST00000618469 ZSCAN25Q6NSZ9 544 aa19.3■□□□□ 0.68
BRCA1-228ENST00000618469 CCDC84Q86UT8 332 aaPredicted RBP19.3■□□□□ 0.68
BRCA1-228ENST00000618469 SHISA4Q96DD7 197 aa19.3■□□□□ 0.68
BRCA1-228ENST00000618469 ARMT1Q9H993 441 aa19.3■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms