RNA–Protein interactions for RNA: ENST00000613788.1

CD48-203, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,500 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-203ENST00000613788 KIF3CO14782 793 aa17.45■□□□□ 0.38
CD48-203ENST00000613788 PCP11498 1178 aaKnown RBP17.45■□□□□ 0.38
CD48-203ENST00000613788 CTDSPL2Q05D32 466 aa17.45■□□□□ 0.38
CD48-203ENST00000613788 C22orf23Q9BZE7 217 aa17.45■□□□□ 0.38
CD48-203ENST00000613788 SWAP70Q9UH65 585 aa17.45■□□□□ 0.38
CD48-203ENST00000613788 NAV1Q8NEY1 1877 aa17.44■□□□□ 0.38
CD48-203ENST00000613788 TBC1D12O60347 775 aa17.44■□□□□ 0.38
CD48-203ENST00000613788 NF2P35240 595 aa17.44■□□□□ 0.38
CD48-203ENST00000613788 TSGA10IPQ3SY00 556 aa17.44■□□□□ 0.38
CD48-203ENST00000613788 AKNAD1Q5T1N1 836 aa17.44■□□□□ 0.38
CD48-203ENST00000613788 NBPF12Q5TAG4 269 aaPredicted RBP17.44■□□□□ 0.38
CD48-203ENST00000613788 PRAMEF18Q5VWM3 479 aa17.44■□□□□ 0.38
CD48-203ENST00000613788 DCAF15Q66K64 600 aa17.44■□□□□ 0.38
CD48-203ENST00000613788 MFSD6Q6ZSS7 791 aa17.44■□□□□ 0.38
CD48-203ENST00000613788 C16orf86Q6ZW13 317 aa17.44■□□□□ 0.38
CD48-203ENST00000613788 METTL16Q86W50 562 aaKnown RBP17.44■□□□□ 0.38
CD48-203ENST00000613788 ZNF784Q8NCA9 323 aaPredicted RBP17.44■□□□□ 0.38
CD48-203ENST00000613788 KCNB2Q92953 911 aa17.44■□□□□ 0.38
CD48-203ENST00000613788 ROBO3Q96MS0 1386 aa17.44■□□□□ 0.38
CD48-203ENST00000613788 MYH1P12882 1939 aa17.43■□□□□ 0.38
CD48-203ENST00000613788 GABPAQ06546 454 aa17.43■□□□□ 0.38
CD48-203ENST00000613788 KRT32Q14532 448 aa17.43■□□□□ 0.38
CD48-203ENST00000613788 STAG1Q8WVM7 1258 aa17.43■□□□□ 0.38
CD48-203ENST00000613788 DYNLL2Q96FJ2 89 aa17.43■□□□□ 0.38
CD48-203ENST00000613788 XPO5Q9HAV4 1204 aaKnown RBP eCLIP17.43■□□□□ 0.38
CD48-203ENST00000613788 MKNK2Q9HBH9 465 aa17.43■□□□□ 0.38
CD48-203ENST00000613788 BAZ2AQ9UIF9 1905 aaKnown RBP17.43■□□□□ 0.38
CD48-203ENST00000613788 CDK8P49336 464 aa17.42■□□□□ 0.38
CD48-203ENST00000613788 NT5C2P49902 561 aa17.42■□□□□ 0.38
CD48-203ENST00000613788 ANAPC15P60006 121 aa17.42■□□□□ 0.38
CD48-203ENST00000613788 MAP3K10Q02779 954 aa17.42■□□□□ 0.38
CD48-203ENST00000613788 EVX2Q03828 476 aa17.42■□□□□ 0.38
CD48-203ENST00000613788 TRDNQ13061 729 aa17.42■□□□□ 0.38
CD48-203ENST00000613788 CDAN1Q8IWY9 1227 aa17.42■□□□□ 0.38
CD48-203ENST00000613788 STK11IPQ8N1F8 1099 aa17.42■□□□□ 0.38
CD48-203ENST00000613788 CDCA5Q96FF9 252 aa17.42■□□□□ 0.38
CD48-203ENST00000613788 CNNM2Q9H8M5 875 aa17.42■□□□□ 0.38
CD48-203ENST00000613788 E7EWF7 191 aa17.42■□□□□ 0.38
CD48-203ENST00000613788 SMIM22K7EJ46 135 aa17.42■□□□□ 0.38
CD48-203ENST00000613788 TOMM70O94826 608 aa17.42■□□□□ 0.38
CD48-203ENST00000613788 FGRP09769 529 aa17.42■□□□□ 0.38
CD48-203ENST00000613788 RBM25P49756 843 aaKnown RBP17.42■□□□□ 0.38
CD48-203ENST00000613788 MIGA2Q7L4E1 593 aa17.42■□□□□ 0.38
CD48-203ENST00000613788 TBC1D10CQ8IV04 446 aa17.42■□□□□ 0.38
CD48-203ENST00000613788 RASEFQ8IZ41 740 aa17.42■□□□□ 0.38
CD48-203ENST00000613788 ZNF444Q8N0Y2 327 aaPredicted RBP17.42■□□□□ 0.38
CD48-203ENST00000613788 NBPF3Q9H094 633 aa17.42■□□□□ 0.38
CD48-203ENST00000613788 TOMM22Q9NS69 142 aa17.42■□□□□ 0.38
CD48-203ENST00000613788 SNX14Q9Y5W7 946 aa17.42■□□□□ 0.38
CD48-203ENST00000613788 DDX60LQ5H9U9 1706 aaKnown RBP17.41■□□□□ 0.38
CD48-203ENST00000613788 PPP1R12BO60237 982 aaPredicted RBP17.41■□□□□ 0.38
CD48-203ENST00000613788 SMC1BQ8NDV3 1235 aa17.41■□□□□ 0.38
CD48-203ENST00000613788 KRT23Q9C075 422 aa17.41■□□□□ 0.38
CD48-203ENST00000613788 POLR2AP24928 1970 aaKnown RBP17.41■□□□□ 0.38
CD48-203ENST00000613788 ORC4O43929 436 aa17.4■□□□□ 0.38
CD48-203ENST00000613788 PSMA5P28066 241 aa17.4■□□□□ 0.38
CD48-203ENST00000613788 TATDN1Q6P1N9 297 aa17.4■□□□□ 0.38
CD48-203ENST00000613788 DLK2Q6UY11 383 aa17.4■□□□□ 0.38
CD48-203ENST00000613788 RALYLQ86SE5 291 aaKnown RBP17.4■□□□□ 0.38
CD48-203ENST00000613788 NCOA7Q8NI08 942 aa17.4■□□□□ 0.38
CD48-203ENST00000613788 RBM46Q8TBY0 533 aaKnown RBP17.4■□□□□ 0.38
CD48-203ENST00000613788 CCDC17Q96LX7 622 aa17.4■□□□□ 0.38
CD48-203ENST00000613788 ZNF341Q9BYN7 854 aa17.4■□□□□ 0.38
CD48-203ENST00000613788 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.4■□□□□ 0.38
CD48-203ENST00000613788 TRAF5O00463 557 aa17.39■□□□□ 0.37
CD48-203ENST00000613788 ITGBL1O95965 494 aaPredicted RBP17.39■□□□□ 0.37
CD48-203ENST00000613788 CERKLQ49MI3 558 aaPredicted RBP17.39■□□□□ 0.37
CD48-203ENST00000613788 RRP12Q5JTH9 1297 aaKnown RBP17.39■□□□□ 0.37
CD48-203ENST00000613788 SLC44A5Q8NCS7 719 aa17.39■□□□□ 0.37
CD48-203ENST00000613788 ESR2Q92731 530 aa17.39■□□□□ 0.37
CD48-203ENST00000613788 TBC1D32Q96NH3 1257 aa17.39■□□□□ 0.37
CD48-203ENST00000613788 NEK1Q96PY6 1258 aa17.39■□□□□ 0.37
CD48-203ENST00000613788 DNAJC18Q9H819 358 aa17.39■□□□□ 0.37
CD48-203ENST00000613788 INCENPQ9NQS7 918 aa17.39■□□□□ 0.37
CD48-203ENST00000613788 TAF6LQ9Y6J9 622 aa17.39■□□□□ 0.37
CD48-203ENST00000613788 FAM196BA6NMK8 535 aa17.38■□□□□ 0.37
CD48-203ENST00000613788 PRDM1O75626 825 aa17.38■□□□□ 0.37
CD48-203ENST00000613788 HMGB1P09429 215 aaKnown RBP17.38■□□□□ 0.37
CD48-203ENST00000613788 SHMT1P34896 483 aa17.38■□□□□ 0.37
CD48-203ENST00000613788 LAMB1P07942 1786 aa17.37■□□□□ 0.37
CD48-203ENST00000613788 RANBP6O60518 1105 aaKnown RBP17.37■□□□□ 0.37
CD48-203ENST00000613788 SLURP2P0DP57 97 aa17.37■□□□□ 0.37
CD48-203ENST00000613788 RASA1P20936 1047 aa17.37■□□□□ 0.37
CD48-203ENST00000613788 STOX1Q6ZVD7 989 aa17.37■□□□□ 0.37
CD48-203ENST00000613788 IL17RAQ96F46 866 aa17.37■□□□□ 0.37
CD48-203ENST00000613788 JAKMIP1Q96N16 626 aaKnown RBP17.37■□□□□ 0.37
CD48-203ENST00000613788 TM6SF1Q9BZW5 370 aa17.37■□□□□ 0.37
CD48-203ENST00000613788 TACC3Q9Y6A5 838 aa17.37■□□□□ 0.37
CD48-203ENST00000613788 NEDD4P46934 1319 aa17.37■□□□□ 0.37
CD48-203ENST00000613788 TSPY2A6NKD2 308 aa17.37■□□□□ 0.37
CD48-203ENST00000613788 USP2O75604 605 aaPredicted RBP17.37■□□□□ 0.37
CD48-203ENST00000613788 IREB2P48200 963 aaKnown RBP17.37■□□□□ 0.37
CD48-203ENST00000613788 TTLL12Q14166 644 aaPredicted RBP17.37■□□□□ 0.37
CD48-203ENST00000613788 ADCK5Q3MIX3 580 aa17.37■□□□□ 0.37
CD48-203ENST00000613788 ARMC9Q7Z3E5 817 aa17.37■□□□□ 0.37
CD48-203ENST00000613788 ZNF408Q9H9D4 720 aa17.37■□□□□ 0.37
CD48-203ENST00000613788 ZNF112Q9UJU3 913 aa17.37■□□□□ 0.37
CD48-203ENST00000613788 LAMA4Q16363 1823 aa17.36■□□□□ 0.37
CD48-203ENST00000613788 PHF20L1A8MW92 1017 aa17.36■□□□□ 0.37
CD48-203ENST00000613788 B4E1Z4 1266 aa17.36■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms