RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 TANGO6Q9C0B7 1094 aa14.29□□□□□ -0.12
LIG1-221ENST00000613670 CNNM2Q9H8M5 875 aa14.29□□□□□ -0.12
LIG1-221ENST00000613670 RAD21O60216 631 aa14.29□□□□□ -0.12
LIG1-221ENST00000613670 UQCRFS1P1P0C7P4 283 aa14.29□□□□□ -0.12
LIG1-221ENST00000613670 PDE4CQ08493 712 aa14.29□□□□□ -0.12
LIG1-221ENST00000613670 ENOX2Q16206 610 aaKnown RBP14.29□□□□□ -0.12
LIG1-221ENST00000613670 WWC2Q6AWC2 1192 aa14.29□□□□□ -0.12
LIG1-221ENST00000613670 PTPRUQ92729 1446 aa14.29□□□□□ -0.12
LIG1-221ENST00000613670 PDE6AP16499 860 aa14.29□□□□□ -0.12
LIG1-221ENST00000613670 TRIM21P19474 475 aaKnown RBP14.29□□□□□ -0.12
LIG1-221ENST00000613670 IGHMBP2P38935 993 aaKnown RBP14.29□□□□□ -0.12
LIG1-221ENST00000613670 DNAJC21Q5F1R6 531 aaKnown RBP14.29□□□□□ -0.12
LIG1-221ENST00000613670 CNGA4Q8IV77 575 aa14.29□□□□□ -0.12
LIG1-221ENST00000613670 SYNE4Q8N205 404 aa14.29□□□□□ -0.12
LIG1-221ENST00000613670 CDC27P30260 824 aa14.28□□□□□ -0.12
LIG1-221ENST00000613670 NAPGQ99747 312 aaPredicted RBP14.28□□□□□ -0.12
LIG1-221ENST00000613670 MROH7-TTC4A0A0A0MT08 1334 aa14.28□□□□□ -0.12
LIG1-221ENST00000613670 CYP27B1O15528 508 aa14.28□□□□□ -0.12
LIG1-221ENST00000613670 PPP6R2O75170 966 aa14.28□□□□□ -0.12
LIG1-221ENST00000613670 CASP14P31944 242 aa14.28□□□□□ -0.12
LIG1-221ENST00000613670 PHKA1P46020 1223 aa14.28□□□□□ -0.12
LIG1-221ENST00000613670 ST5P78524 1137 aa14.28□□□□□ -0.12
LIG1-221ENST00000613670 MAP9Q49MG5 647 aa14.28□□□□□ -0.12
LIG1-221ENST00000613670 IFIT1BQ5T764 474 aaKnown RBP14.28□□□□□ -0.12
LIG1-221ENST00000613670 CYB5R4Q7L1T6 521 aa14.28□□□□□ -0.12
LIG1-221ENST00000613670 ILDR1Q86SU0 546 aaPredicted RBP14.28□□□□□ -0.12
LIG1-221ENST00000613670 DNAJC10Q8IXB1 793 aa14.28□□□□□ -0.12
LIG1-221ENST00000613670 RABGGTAQ92696 567 aa14.28□□□□□ -0.12
LIG1-221ENST00000613670 TECPR2O15040 1411 aa14.28□□□□□ -0.12
LIG1-221ENST00000613670 UBE2Q2LH0YL09 131 aa14.28□□□□□ -0.12
LIG1-221ENST00000613670 H7C1W4 665 aa14.28□□□□□ -0.12
LIG1-221ENST00000613670 SNAP23O00161 211 aa14.28□□□□□ -0.12
LIG1-221ENST00000613670 TADA3O75528 432 aa14.28□□□□□ -0.12
LIG1-221ENST00000613670 CC2D1AQ6P1N0 951 aaPredicted RBP14.28□□□□□ -0.12
LIG1-221ENST00000613670 TBC1D10CQ8IV04 446 aa14.28□□□□□ -0.12
LIG1-221ENST00000613670 PCDHB6Q9Y5E3 794 aa14.28□□□□□ -0.12
LIG1-221ENST00000613670 DEXIO95424 95 aa14.27□□□□□ -0.12
LIG1-221ENST00000613670 MTIF2P46199 727 aaKnown RBP14.27□□□□□ -0.12
LIG1-221ENST00000613670 PIP4K2BP78356 416 aa14.27□□□□□ -0.12
LIG1-221ENST00000613670 RBL2Q08999 1139 aa14.27□□□□□ -0.12
LIG1-221ENST00000613670 MB21D2Q8IYB1 491 aaPredicted RBP14.27□□□□□ -0.12
LIG1-221ENST00000613670 SLC35F6Q8N357 371 aa14.27□□□□□ -0.12
LIG1-221ENST00000613670 ESR2Q92731 530 aa14.27□□□□□ -0.12
LIG1-221ENST00000613670 CDC5LQ99459 802 aaKnown RBP14.27□□□□□ -0.12
LIG1-221ENST00000613670 CSRNP2Q9H175 543 aa14.27□□□□□ -0.12
LIG1-221ENST00000613670 WWC3Q9ULE0 1092 aa14.27□□□□□ -0.12
LIG1-221ENST00000613670 ANKRD65E5RJM6 399 aa14.27□□□□□ -0.13
LIG1-221ENST00000613670 PRR29P0C7W0 189 aa14.27□□□□□ -0.13
LIG1-221ENST00000613670 SPA17Q15506 151 aa14.27□□□□□ -0.13
LIG1-221ENST00000613670 ACRBPQ8NEB7 543 aa14.27□□□□□ -0.13
LIG1-221ENST00000613670 SENP2Q9HC62 589 aa14.27□□□□□ -0.13
LIG1-221ENST00000613670 GNL3LQ9NVN8 582 aaKnown RBP14.27□□□□□ -0.13
LIG1-221ENST00000613670 ITSN1Q15811 1721 aa14.27□□□□□ -0.13
LIG1-221ENST00000613670 UBA7P41226 1012 aa14.27□□□□□ -0.13
LIG1-221ENST00000613670 FOXO4P98177 505 aa14.27□□□□□ -0.13
LIG1-221ENST00000613670 CCDC122Q5T0U0 273 aa14.27□□□□□ -0.13
LIG1-221ENST00000613670 BICDL1Q6ZP65 573 aa14.27□□□□□ -0.13
LIG1-221ENST00000613670 METTL16Q86W50 562 aaKnown RBP14.27□□□□□ -0.13
LIG1-221ENST00000613670 GPR108Q9NPR9 543 aa14.27□□□□□ -0.13
LIG1-221ENST00000613670 COL15A1P39059 1388 aa14.27□□□□□ -0.13
LIG1-221ENST00000613670 KRT2P35908 639 aa14.26□□□□□ -0.13
LIG1-221ENST00000613670 TCIRG1Q13488 830 aa14.26□□□□□ -0.13
LIG1-221ENST00000613670 RABL6Q3YEC7 729 aaPredicted RBP14.26□□□□□ -0.13
LIG1-221ENST00000613670 BPIFA3Q9BQP9 254 aa14.26□□□□□ -0.13
LIG1-221ENST00000613670 GREM2Q9H772 168 aa14.26□□□□□ -0.13
LIG1-221ENST00000613670 ZNF446Q9NWS9 450 aa14.26□□□□□ -0.13
LIG1-221ENST00000613670 ZSWIM5Q9P217 1185 aa14.26□□□□□ -0.13
LIG1-221ENST00000613670 STAT6P42226 847 aa14.26□□□□□ -0.13
LIG1-221ENST00000613670 IRX5P78411 483 aaPredicted RBP14.26□□□□□ -0.13
LIG1-221ENST00000613670 PDE4BQ07343 736 aa14.26□□□□□ -0.13
LIG1-221ENST00000613670 IFNL3Q8IZI9 196 aa14.26□□□□□ -0.13
LIG1-221ENST00000613670 RGS22Q8NE09 1264 aa14.26□□□□□ -0.13
LIG1-221ENST00000613670 L2HGDHQ9H9P8 463 aa14.26□□□□□ -0.13
LIG1-221ENST00000613670 SH2B2O14492 632 aaPredicted RBP14.26□□□□□ -0.13
LIG1-221ENST00000613670 ENC1O14682 589 aa14.26□□□□□ -0.13
LIG1-221ENST00000613670 TEX33O43247 280 aa14.26□□□□□ -0.13
LIG1-221ENST00000613670 PRKAB2O43741 272 aa14.26□□□□□ -0.13
LIG1-221ENST00000613670 PLA2G4AP47712 749 aa14.26□□□□□ -0.13
LIG1-221ENST00000613670 AKNAD1Q5T1N1 836 aa14.26□□□□□ -0.13
LIG1-221ENST00000613670 TMTC2Q8N394 836 aa14.26□□□□□ -0.13
LIG1-221ENST00000613670 UTYO14607 1347 aa14.26□□□□□ -0.13
LIG1-221ENST00000613670 MACROD2A1Z1Q3 448 aa14.25□□□□□ -0.13
LIG1-221ENST00000613670 IBSPP21815 317 aaPredicted RBP14.25□□□□□ -0.13
LIG1-221ENST00000613670 SRGAP1Q7Z6B7 1085 aa14.25□□□□□ -0.13
LIG1-221ENST00000613670 IQUBQ8NA54 791 aa14.25□□□□□ -0.13
LIG1-221ENST00000613670 EPSTI1Q96J88 318 aa14.25□□□□□ -0.13
LIG1-221ENST00000613670 LUC7L2Q9Y383 392 aaKnown RBP14.25□□□□□ -0.13
LIG1-221ENST00000613670 FHOD1Q9Y613 1164 aa14.25□□□□□ -0.13
LIG1-221ENST00000613670 CCDC194A0A1B0GVG4 234 aa14.25□□□□□ -0.13
LIG1-221ENST00000613670 NBPF26B4DH59 902 aa14.25□□□□□ -0.13
LIG1-221ENST00000613670 SSBP05455 408 aaKnown RBP eCLIP14.25□□□□□ -0.13
LIG1-221ENST00000613670 ERCC3P19447 782 aa14.25□□□□□ -0.13
LIG1-221ENST00000613670 ANTXR2P58335 489 aa14.25□□□□□ -0.13
LIG1-221ENST00000613670 PPARDQ03181 441 aa14.25□□□□□ -0.13
LIG1-221ENST00000613670 NBPF14Q5TI25 921 aa14.25□□□□□ -0.13
LIG1-221ENST00000613670 NBPF10Q6P3W6 841 aaKnown RBP14.25□□□□□ -0.13
LIG1-221ENST00000613670 NBPF15Q8N660 670 aa14.25□□□□□ -0.13
LIG1-221ENST00000613670 ZMYND10O75800 440 aa14.25□□□□□ -0.13
LIG1-221ENST00000613670 IVLP07476 585 aa14.25□□□□□ -0.13
LIG1-221ENST00000613670 SPAG1Q07617 926 aa14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms