RNA–Protein interactions for RNA: ENST00000607212.1

CTSA-216, Transcript of cathepsin A, humanhuman

TSL 4

Gene CTSA, Length 590 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSA-216ENST00000607212 CHRDL2Q6WN34 429 aa18.27■□□□□ 0.52
CTSA-216ENST00000607212 OSBPL5Q9H0X9 879 aaPredicted RBP18.27■□□□□ 0.52
CTSA-216ENST00000607212 UNC93B1Q9H1C4 597 aa18.27■□□□□ 0.52
CTSA-216ENST00000607212 SNRKQ9NRH2 765 aa18.27■□□□□ 0.52
CTSA-216ENST00000607212 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP18.27■□□□□ 0.52
CTSA-216ENST00000607212 PNMA6EA0A0J9YXQ4 647 aa18.26■□□□□ 0.51
CTSA-216ENST00000607212 TBC1D12O60347 775 aa18.26■□□□□ 0.51
CTSA-216ENST00000607212 FARP2O94887 1054 aaPredicted RBP18.26■□□□□ 0.51
CTSA-216ENST00000607212 BAG3O95817 575 aa18.26■□□□□ 0.51
CTSA-216ENST00000607212 MAP4K4O95819 1239 aaPredicted RBP18.26■□□□□ 0.51
CTSA-216ENST00000607212 TFRCP02786 760 aaKnown RBP18.26■□□□□ 0.51
CTSA-216ENST00000607212 ARID4AP29374 1257 aaPredicted RBP18.26■□□□□ 0.51
CTSA-216ENST00000607212 MCAMP43121 646 aa18.26■□□□□ 0.51
CTSA-216ENST00000607212 MAP3K10Q02779 954 aa18.26■□□□□ 0.51
CTSA-216ENST00000607212 PABPC4Q13310 644 aaKnown RBP eCLIP18.26■□□□□ 0.51
CTSA-216ENST00000607212 CCDC158Q5M9N0 1113 aa18.26■□□□□ 0.51
CTSA-216ENST00000607212 TREML2Q5T2D2 321 aa18.26■□□□□ 0.51
CTSA-216ENST00000607212 NAA16Q6N069 864 aaPredicted RBP18.26■□□□□ 0.51
CTSA-216ENST00000607212 U2AF1L4Q8WU68 220 aaKnown RBP18.26■□□□□ 0.51
CTSA-216ENST00000607212 AS3MTQ9HBK9 375 aa18.26■□□□□ 0.51
CTSA-216ENST00000607212 INHAP05111 366 aa18.25■□□□□ 0.51
CTSA-216ENST00000607212 FXR1P51114 621 aaKnown RBP eCLIP18.25■□□□□ 0.51
CTSA-216ENST00000607212 HMGCS2P54868 508 aa18.25■□□□□ 0.51
CTSA-216ENST00000607212 ZNF280CQ8ND82 737 aa18.25■□□□□ 0.51
CTSA-216ENST00000607212 SH3RF3Q8TEJ3 882 aaPredicted RBP18.25■□□□□ 0.51
CTSA-216ENST00000607212 ZNF384Q8TF68 577 aa18.25■□□□□ 0.51
CTSA-216ENST00000607212 AATFQ9NY61 560 aaKnown RBP eCLIP18.25■□□□□ 0.51
CTSA-216ENST00000607212 USP17L5A8MUK1 530 aa18.24■□□□□ 0.51
CTSA-216ENST00000607212 NPM3O75607 178 aaKnown RBP18.24■□□□□ 0.51
CTSA-216ENST00000607212 ZKSCAN2Q63HK3 967 aa18.24■□□□□ 0.51
CTSA-216ENST00000607212 CRACR2BQ8N4Y2 399 aaPredicted RBP18.24■□□□□ 0.51
CTSA-216ENST00000607212 PROCA1Q8NCQ7 364 aaPredicted RBP18.24■□□□□ 0.51
CTSA-216ENST00000607212 TBC1D2Q9BYX2 928 aa18.24■□□□□ 0.51
CTSA-216ENST00000607212 NR2E3Q9Y5X4 410 aa18.24■□□□□ 0.51
CTSA-216ENST00000607212 DOCK3Q8IZD9 2030 aa18.23■□□□□ 0.51
CTSA-216ENST00000607212 MAST2Q6P0Q8 1798 aa18.23■□□□□ 0.51
CTSA-216ENST00000607212 SGPL1O95470 568 aa18.23■□□□□ 0.51
CTSA-216ENST00000607212 PLCG2P16885 1265 aa18.23■□□□□ 0.51
CTSA-216ENST00000607212 CAP2P40123 477 aa18.23■□□□□ 0.51
CTSA-216ENST00000607212 MAPKAPK5Q8IW41 473 aa18.23■□□□□ 0.51
CTSA-216ENST00000607212 FTSJ3Q8IY81 847 aaKnown RBP18.23■□□□□ 0.51
CTSA-216ENST00000607212 TMEM57Q8N5G2 664 aa18.23■□□□□ 0.51
CTSA-216ENST00000607212 DEFB118Q96PH6 123 aa18.23■□□□□ 0.51
CTSA-216ENST00000607212 TMOD4Q9NZQ9 345 aa18.23■□□□□ 0.51
CTSA-216ENST00000607212 MKI67P46013 3256 aaKnown RBP18.23■□□□□ 0.51
CTSA-216ENST00000607212 SURF6O75683 361 aaKnown RBP18.22■□□□□ 0.51
CTSA-216ENST00000607212 GCLCP48506 637 aaPredicted RBP18.22■□□□□ 0.51
CTSA-216ENST00000607212 IRX3P78415 501 aaPredicted RBP18.22■□□□□ 0.51
CTSA-216ENST00000607212 FAM110CQ1W6H9 321 aa18.22■□□□□ 0.51
CTSA-216ENST00000607212 TNNI3KQ59H18 835 aa18.22■□□□□ 0.51
CTSA-216ENST00000607212 PXYLP1Q8TE99 480 aa18.22■□□□□ 0.51
CTSA-216ENST00000607212 TGFBRAP1Q8WUH2 860 aa18.22■□□□□ 0.51
CTSA-216ENST00000607212 DBNDD2Q9BQY9 259 aa18.22■□□□□ 0.51
CTSA-216ENST00000607212 C1orf115Q9H7X2 142 aa18.22■□□□□ 0.51
CTSA-216ENST00000607212 PI4KBQ9UBF8 816 aa18.22■□□□□ 0.51
CTSA-216ENST00000607212 HERC5Q9UII4 1024 aaKnown RBP18.22■□□□□ 0.51
CTSA-216ENST00000607212 FPGT-TNNI3KV9GXZ4 949 aa18.22■□□□□ 0.51
CTSA-216ENST00000607212 LOC285556D6RIA3 1793 aa18.22■□□□□ 0.51
CTSA-216ENST00000607212 COL2A1P02458 1487 aaPredicted RBP18.21■□□□□ 0.51
CTSA-216ENST00000607212 IRF5Q13568 498 aa18.21■□□□□ 0.51
CTSA-216ENST00000607212 DHX36Q9H2U1 1008 aaKnown RBP18.21■□□□□ 0.51
CTSA-216ENST00000607212 EVI5O60447 810 aa18.2■□□□□ 0.5
CTSA-216ENST00000607212 MTMR2Q13614 643 aa18.2■□□□□ 0.5
CTSA-216ENST00000607212 ITPRIPQ8IWB1 547 aa18.2■□□□□ 0.5
CTSA-216ENST00000607212 CCAR1Q8IX12 1150 aaKnown RBP18.2■□□□□ 0.5
CTSA-216ENST00000607212 ASCC2Q9H1I8 757 aaPredicted RBP18.2■□□□□ 0.5
CTSA-216ENST00000607212 SAP30BPQ9UHR5 308 aaKnown RBP18.2■□□□□ 0.5
CTSA-216ENST00000607212 BRCA2P51587 3418 aa18.2■□□□□ 0.5
CTSA-216ENST00000607212 CEP290O15078 2479 aa18.19■□□□□ 0.5
CTSA-216ENST00000607212 GDF11O95390 407 aa18.19■□□□□ 0.5
CTSA-216ENST00000607212 HLA-DOAP06340 250 aa18.19■□□□□ 0.5
CTSA-216ENST00000607212 CDK5RAP2Q96SN8 1893 aa18.19■□□□□ 0.5
CTSA-216ENST00000607212 CWC22Q9HCG8 908 aaKnown RBP18.19■□□□□ 0.5
CTSA-216ENST00000607212 MYO5AQ9Y4I1 1855 aaKnown RBP18.19■□□□□ 0.5
CTSA-216ENST00000607212 ASNSP08243 561 aa18.18■□□□□ 0.5
CTSA-216ENST00000607212 ZAP70P43403 619 aa18.18■□□□□ 0.5
CTSA-216ENST00000607212 RRP1BQ14684 758 aaKnown RBP18.18■□□□□ 0.5
CTSA-216ENST00000607212 XRN2Q9H0D6 950 aaKnown RBP eCLIP18.18■□□□□ 0.5
CTSA-216ENST00000607212 GPR108Q9NPR9 543 aa18.18■□□□□ 0.5
CTSA-216ENST00000607212 RBM27Q9P2N5 1060 aaKnown RBP18.18■□□□□ 0.5
CTSA-216ENST00000607212 FLT1P17948 1338 aa18.18■□□□□ 0.5
CTSA-216ENST00000607212 IDH1O75874 414 aaKnown RBP18.17■□□□□ 0.5
CTSA-216ENST00000607212 CYP7A1P22680 504 aa18.17■□□□□ 0.5
CTSA-216ENST00000607212 ATP8B2P98198 1209 aa18.17■□□□□ 0.5
CTSA-216ENST00000607212 CCDC8Q9H0W5 538 aaPredicted RBP18.17■□□□□ 0.5
CTSA-216ENST00000607212 PALD1Q9ULE6 856 aa18.17■□□□□ 0.5
CTSA-216ENST00000607212 MYH1P12882 1939 aa18.16■□□□□ 0.5
CTSA-216ENST00000607212 HMGCRP04035 888 aa18.16■□□□□ 0.5
CTSA-216ENST00000607212 CYP2E1P05181 493 aaPredicted RBP18.16■□□□□ 0.5
CTSA-216ENST00000607212 USP5P45974 858 aa18.16■□□□□ 0.5
CTSA-216ENST00000607212 BACE1P56817 501 aa18.16■□□□□ 0.5
CTSA-216ENST00000607212 HNRNPUQ00839 825 aaKnown RBP eCLIP18.16■□□□□ 0.5
CTSA-216ENST00000607212 POLA2Q14181 598 aa18.16■□□□□ 0.5
CTSA-216ENST00000607212 SH3D19Q5HYK7 790 aa18.16■□□□□ 0.5
CTSA-216ENST00000607212 FOXP4Q8IVH2 680 aaPredicted RBP18.16■□□□□ 0.5
CTSA-216ENST00000607212 PAWRQ96IZ0 340 aaKnown RBP18.16■□□□□ 0.5
CTSA-216ENST00000607212 SIPA1L1O43166 1804 aa18.16■□□□□ 0.5
CTSA-216ENST00000607212 FOCADQ5VW36 1801 aa18.16■□□□□ 0.5
CTSA-216ENST00000607212 TRIOBPQ9H2D6 2365 aa18.16■□□□□ 0.5
CTSA-216ENST00000607212 ZBTB7BO15156 539 aaPredicted RBP18.15■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms