RNA–Protein interactions for RNA: ENST00000602239.1

SHKBP1-228, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 450 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-228ENST00000602239 SLC45A1Q9Y2W3 748 aa19.34■□□□□ 0.69
SHKBP1-228ENST00000602239 PTPRFP10586 1907 aa19.33■□□□□ 0.69
SHKBP1-228ENST00000602239 DOCK1Q14185 1865 aa19.33■□□□□ 0.69
SHKBP1-228ENST00000602239 SPP2Q13103 211 aa19.33■□□□□ 0.68
SHKBP1-228ENST00000602239 CCDC158Q5M9N0 1113 aa19.33■□□□□ 0.68
SHKBP1-228ENST00000602239 NAA16Q6N069 864 aaPredicted RBP19.33■□□□□ 0.68
SHKBP1-228ENST00000602239 ITPRIPQ8IWB1 547 aa19.33■□□□□ 0.68
SHKBP1-228ENST00000602239 SHISA4Q96DD7 197 aa19.33■□□□□ 0.68
SHKBP1-228ENST00000602239 AGTPBP1Q9UPW5 1226 aa19.33■□□□□ 0.68
SHKBP1-228ENST00000602239 CCL5P13501 91 aa19.32■□□□□ 0.68
SHKBP1-228ENST00000602239 CAP2P40123 477 aa19.32■□□□□ 0.68
SHKBP1-228ENST00000602239 ZAP70P43403 619 aa19.32■□□□□ 0.68
SHKBP1-228ENST00000602239 HABP4Q5JVS0 413 aaKnown RBP19.32■□□□□ 0.68
SHKBP1-228ENST00000602239 FTSJ3Q8IY81 847 aaKnown RBP19.32■□□□□ 0.68
SHKBP1-228ENST00000602239 GCC1Q96CN9 775 aa19.32■□□□□ 0.68
SHKBP1-228ENST00000602239 CCDC8Q9H0W5 538 aaPredicted RBP19.32■□□□□ 0.68
SHKBP1-228ENST00000602239 TLR7Q9NYK1 1049 aaKnown RBP19.32■□□□□ 0.68
SHKBP1-228ENST00000602239 BIN2Q9UBW5 565 aaPredicted RBP19.32■□□□□ 0.68
SHKBP1-228ENST00000602239 NOP58Q9Y2X3 529 aaKnown RBP19.32■□□□□ 0.68
SHKBP1-228ENST00000602239 COL2A1P02458 1487 aaPredicted RBP19.31■□□□□ 0.68
SHKBP1-228ENST00000602239 PPP4CP60510 307 aa19.31■□□□□ 0.68
SHKBP1-228ENST00000602239 JAG1P78504 1218 aa19.31■□□□□ 0.68
SHKBP1-228ENST00000602239 ANKRD13CQ8N6S4 541 aa19.31■□□□□ 0.68
SHKBP1-228ENST00000602239 ZNF280CQ8ND82 737 aa19.31■□□□□ 0.68
SHKBP1-228ENST00000602239 SMCR8Q8TEV9 937 aaPredicted RBP19.31■□□□□ 0.68
SHKBP1-228ENST00000602239 TGFBRAP1Q8WUH2 860 aa19.31■□□□□ 0.68
SHKBP1-228ENST00000602239 EAF2Q96CJ1 260 aaPredicted RBP19.31■□□□□ 0.68
SHKBP1-228ENST00000602239 PIH1D3Q9NQM4 214 aaKnown RBP19.31■□□□□ 0.68
SHKBP1-228ENST00000602239 PI4KBQ9UBF8 816 aa19.31■□□□□ 0.68
SHKBP1-228ENST00000602239 DBNLQ9UJU6 430 aaKnown RBP19.31■□□□□ 0.68
SHKBP1-228ENST00000602239 MGAMO43451 1857 aa19.31■□□□□ 0.68
SHKBP1-228ENST00000602239 FLT3LGP49771 235 aa19.3■□□□□ 0.68
SHKBP1-228ENST00000602239 HMGCS2P54868 508 aa19.3■□□□□ 0.68
SHKBP1-228ENST00000602239 SHROOM1Q2M3G4 852 aaPredicted RBP19.3■□□□□ 0.68
SHKBP1-228ENST00000602239 MAPKAPK5Q8IW41 473 aa19.3■□□□□ 0.68
SHKBP1-228ENST00000602239 ZNF512BQ96KM6 892 aaPredicted RBP19.3■□□□□ 0.68
SHKBP1-228ENST00000602239 NOL10Q9BSC4 688 aaKnown RBP19.3■□□□□ 0.68
SHKBP1-228ENST00000602239 MYO5AQ9Y4I1 1855 aaKnown RBP19.29■□□□□ 0.68
SHKBP1-228ENST00000602239 USP17L5A8MUK1 530 aa19.29■□□□□ 0.68
SHKBP1-228ENST00000602239 BAG3O95817 575 aa19.29■□□□□ 0.68
SHKBP1-228ENST00000602239 ELNP15502 786 aa19.29■□□□□ 0.68
SHKBP1-228ENST00000602239 DYNLL1P63167 89 aaKnown RBP19.29■□□□□ 0.68
SHKBP1-228ENST00000602239 PROCA1Q8NCQ7 364 aaPredicted RBP19.29■□□□□ 0.68
SHKBP1-228ENST00000602239 RNF208Q9H0X6 261 aa19.29■□□□□ 0.68
SHKBP1-228ENST00000602239 HERC5Q9UII4 1024 aaKnown RBP19.29■□□□□ 0.68
SHKBP1-228ENST00000602239 CEP290O15078 2479 aa19.28■□□□□ 0.68
SHKBP1-228ENST00000602239 ADCY3O60266 1144 aa19.28■□□□□ 0.68
SHKBP1-228ENST00000602239 GJB1P08034 283 aa19.28■□□□□ 0.68
SHKBP1-228ENST00000602239 GJA8P48165 433 aa19.28■□□□□ 0.68
SHKBP1-228ENST00000602239 SLAIN1Q8ND83 568 aa19.28■□□□□ 0.68
SHKBP1-228ENST00000602239 UNC93B1Q9H1C4 597 aa19.28■□□□□ 0.68
SHKBP1-228ENST00000602239 DHX36Q9H2U1 1008 aaKnown RBP19.28■□□□□ 0.68
SHKBP1-228ENST00000602239 DNAJC18Q9H819 358 aa19.28■□□□□ 0.68
SHKBP1-228ENST00000602239 PCDH10Q9P2E7 1040 aa19.28■□□□□ 0.68
SHKBP1-228ENST00000602239 PALD1Q9ULE6 856 aa19.28■□□□□ 0.68
SHKBP1-228ENST00000602239 NDUFB9Q9Y6M9 179 aa19.28■□□□□ 0.68
SHKBP1-228ENST00000602239 FLT1P17948 1338 aa19.27■□□□□ 0.68
SHKBP1-228ENST00000602239 TNPO2O14787 897 aaKnown RBP19.27■□□□□ 0.68
SHKBP1-228ENST00000602239 PLCG2P16885 1265 aa19.27■□□□□ 0.68
SHKBP1-228ENST00000602239 SH3D19Q5HYK7 790 aa19.27■□□□□ 0.68
SHKBP1-228ENST00000602239 CEP85Q6P2H3 762 aa19.27■□□□□ 0.68
SHKBP1-228ENST00000602239 UBE2Q1Q7Z7E8 422 aa19.27■□□□□ 0.68
SHKBP1-228ENST00000602239 METTL16Q86W50 562 aaKnown RBP19.27■□□□□ 0.68
SHKBP1-228ENST00000602239 PANK1Q8TE04 598 aa19.27■□□□□ 0.68
SHKBP1-228ENST00000602239 ASCC2Q9H1I8 757 aaPredicted RBP19.27■□□□□ 0.68
SHKBP1-228ENST00000602239 SAP30BPQ9UHR5 308 aaKnown RBP19.27■□□□□ 0.68
SHKBP1-228ENST00000602239 DOCK3Q8IZD9 2030 aa19.27■□□□□ 0.67
SHKBP1-228ENST00000602239 SIPA1L1O43166 1804 aa19.26■□□□□ 0.67
SHKBP1-228ENST00000602239 H0YGN5 161 aa19.26■□□□□ 0.67
SHKBP1-228ENST00000602239 CYP7A1P22680 504 aa19.26■□□□□ 0.67
SHKBP1-228ENST00000602239 UBXN2AP68543 259 aa19.26■□□□□ 0.67
SHKBP1-228ENST00000602239 DIEXFQ68CQ4 756 aaKnown RBP19.26■□□□□ 0.67
SHKBP1-228ENST00000602239 ATAD5Q96QE3 1844 aa19.25■□□□□ 0.67
SHKBP1-228ENST00000602239 IRF5Q13568 498 aa19.25■□□□□ 0.67
SHKBP1-228ENST00000602239 FAM110CQ1W6H9 321 aa19.25■□□□□ 0.67
SHKBP1-228ENST00000602239 FOXP4Q8IVH2 680 aaPredicted RBP19.25■□□□□ 0.67
SHKBP1-228ENST00000602239 MIGA1Q8NAN2 632 aa19.25■□□□□ 0.67
SHKBP1-228ENST00000602239 NKX2-3Q8TAU0 364 aa19.25■□□□□ 0.67
SHKBP1-228ENST00000602239 WDR18Q9BV38 432 aa19.25■□□□□ 0.67
SHKBP1-228ENST00000602239 TBC1D2Q9BYX2 928 aa19.25■□□□□ 0.67
SHKBP1-228ENST00000602239 ANTXR1Q9H6X2 564 aa19.25■□□□□ 0.67
SHKBP1-228ENST00000602239 PNMA3Q9UL41 463 aa19.25■□□□□ 0.67
SHKBP1-228ENST00000602239 COLQQ9Y215 455 aaPredicted RBP19.25■□□□□ 0.67
SHKBP1-228ENST00000602239 EXOC6BQ9Y2D4 811 aa19.25■□□□□ 0.67
SHKBP1-228ENST00000602239 PEX10O60683 326 aa19.24■□□□□ 0.67
SHKBP1-228ENST00000602239 IDH1O75874 414 aaKnown RBP19.24■□□□□ 0.67
SHKBP1-228ENST00000602239 GDF11O95390 407 aa19.24■□□□□ 0.67
SHKBP1-228ENST00000602239 INHAP05111 366 aa19.24■□□□□ 0.67
SHKBP1-228ENST00000602239 MTMR2Q13614 643 aa19.24■□□□□ 0.67
SHKBP1-228ENST00000602239 CRACR2BQ8N4Y2 399 aaPredicted RBP19.24■□□□□ 0.67
SHKBP1-228ENST00000602239 PXYLP1Q8TE99 480 aa19.24■□□□□ 0.67
SHKBP1-228ENST00000602239 U2AF1L4Q8WU68 220 aaKnown RBP19.24■□□□□ 0.67
SHKBP1-228ENST00000602239 COA7Q96BR5 231 aa19.24■□□□□ 0.67
SHKBP1-228ENST00000602239 TAOK2Q9UL54 1235 aa19.24■□□□□ 0.67
SHKBP1-228ENST00000602239 CDK5RAP2Q96SN8 1893 aa19.23■□□□□ 0.67
SHKBP1-228ENST00000602239 SGPL1O95470 568 aa19.23■□□□□ 0.67
SHKBP1-228ENST00000602239 ASNSP08243 561 aa19.23■□□□□ 0.67
SHKBP1-228ENST00000602239 GCLCP48506 637 aaPredicted RBP19.23■□□□□ 0.67
SHKBP1-228ENST00000602239 BACE1P56817 501 aa19.23■□□□□ 0.67
SHKBP1-228ENST00000602239 DPF3Q92784 378 aa19.23■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 66.1 ms