RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 PCP11498 1178 aaKnown RBP17.04■□□□□ 0.32
UPF1-211ENST00000600868 ZKSCAN1P17029 563 aaPredicted RBP17.04■□□□□ 0.32
UPF1-211ENST00000600868 RBM25P49756 843 aaKnown RBP17.04■□□□□ 0.32
UPF1-211ENST00000600868 ANAPC15P60006 121 aa17.04■□□□□ 0.32
UPF1-211ENST00000600868 MAP3K10Q02779 954 aa17.04■□□□□ 0.32
UPF1-211ENST00000600868 EVX2Q03828 476 aa17.04■□□□□ 0.32
UPF1-211ENST00000600868 CTDSPL2Q05D32 466 aa17.04■□□□□ 0.32
UPF1-211ENST00000600868 SLC4A8Q2Y0W8 1093 aa17.04■□□□□ 0.32
UPF1-211ENST00000600868 AKNAD1Q5T1N1 836 aa17.04■□□□□ 0.32
UPF1-211ENST00000600868 RASEFQ8IZ41 740 aa17.04■□□□□ 0.32
UPF1-211ENST00000600868 HOOK2Q96ED9 719 aa17.04■□□□□ 0.32
UPF1-211ENST00000600868 HERC5Q9UII4 1024 aaKnown RBP17.04■□□□□ 0.32
UPF1-211ENST00000600868 SERPINB13Q9UIV8 391 aa17.04■□□□□ 0.32
UPF1-211ENST00000600868 SIPA1L1O43166 1804 aa17.03■□□□□ 0.32
UPF1-211ENST00000600868 ADM5C9JUS6 153 aa17.03■□□□□ 0.32
UPF1-211ENST00000600868 TBC1D12O60347 775 aa17.03■□□□□ 0.32
UPF1-211ENST00000600868 PDE4BQ07343 736 aa17.03■□□□□ 0.32
UPF1-211ENST00000600868 SUPT20HL1Q3ZLR7 823 aa17.03■□□□□ 0.32
UPF1-211ENST00000600868 MAP1SQ66K74 1059 aaPredicted RBP17.03■□□□□ 0.32
UPF1-211ENST00000600868 C16orf86Q6ZW13 317 aa17.03■□□□□ 0.32
UPF1-211ENST00000600868 USP48Q86UV5 1035 aa17.03■□□□□ 0.32
UPF1-211ENST00000600868 TBC1D10CQ8IV04 446 aa17.03■□□□□ 0.32
UPF1-211ENST00000600868 CDAN1Q8IWY9 1227 aa17.03■□□□□ 0.32
UPF1-211ENST00000600868 STAG1Q8WVM7 1258 aa17.03■□□□□ 0.32
UPF1-211ENST00000600868 IL17RAQ96F46 866 aa17.03■□□□□ 0.32
UPF1-211ENST00000600868 DYNLL2Q96FJ2 89 aa17.03■□□□□ 0.32
UPF1-211ENST00000600868 TBC1D32Q96NH3 1257 aa17.03■□□□□ 0.32
UPF1-211ENST00000600868 RNF41Q9H4P4 317 aaPredicted RBP17.03■□□□□ 0.32
UPF1-211ENST00000600868 SWAP70Q9UH65 585 aa17.03■□□□□ 0.32
UPF1-211ENST00000600868 SNX14Q9Y5W7 946 aa17.03■□□□□ 0.32
UPF1-211ENST00000600868 KIF3CO14782 793 aa17.02■□□□□ 0.32
UPF1-211ENST00000600868 KRT32Q14532 448 aa17.02■□□□□ 0.32
UPF1-211ENST00000600868 NBPF12Q5TAG4 269 aaPredicted RBP17.02■□□□□ 0.32
UPF1-211ENST00000600868 CHADLQ6NUI6 762 aa17.02■□□□□ 0.32
UPF1-211ENST00000600868 MFSD6Q6ZSS7 791 aa17.02■□□□□ 0.32
UPF1-211ENST00000600868 CRACR2BQ8N4Y2 399 aaPredicted RBP17.02■□□□□ 0.32
UPF1-211ENST00000600868 GLIS2Q9BZE0 524 aaPredicted RBP17.02■□□□□ 0.32
UPF1-211ENST00000600868 ZNF287Q9HBT7 754 aa17.02■□□□□ 0.32
UPF1-211ENST00000600868 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.02■□□□□ 0.32
UPF1-211ENST00000600868 TAF6LQ9Y6J9 622 aa17.02■□□□□ 0.32
UPF1-211ENST00000600868 E7EWF7 191 aa17.01■□□□□ 0.31
UPF1-211ENST00000600868 ORC4O43929 436 aa17.01■□□□□ 0.31
UPF1-211ENST00000600868 CDK8P49336 464 aa17.01■□□□□ 0.31
UPF1-211ENST00000600868 NT5C2P49902 561 aa17.01■□□□□ 0.31
UPF1-211ENST00000600868 PRAMEF18Q5VWM3 479 aa17.01■□□□□ 0.31
UPF1-211ENST00000600868 TRIM34Q9BYJ4 488 aa17.01■□□□□ 0.31
UPF1-211ENST00000600868 CNNM2Q9H8M5 875 aa17.01■□□□□ 0.31
UPF1-211ENST00000600868 TACC3Q9Y6A5 838 aa17.01■□□□□ 0.31
UPF1-211ENST00000600868 SHMT1P34896 483 aa17■□□□□ 0.31
UPF1-211ENST00000600868 DCAF15Q66K64 600 aa17■□□□□ 0.31
UPF1-211ENST00000600868 STOX1Q6ZVD7 989 aa17■□□□□ 0.31
UPF1-211ENST00000600868 ZNF784Q8NCA9 323 aaPredicted RBP17■□□□□ 0.31
UPF1-211ENST00000600868 SLC44A5Q8NCS7 719 aa17■□□□□ 0.31
UPF1-211ENST00000600868 CDCA5Q96FF9 252 aa17■□□□□ 0.31
UPF1-211ENST00000600868 DNAJC18Q9H819 358 aa17■□□□□ 0.31
UPF1-211ENST00000600868 XPO5Q9HAV4 1204 aaKnown RBP eCLIP17■□□□□ 0.31
UPF1-211ENST00000600868 TRDNQ13061 729 aa16.99■□□□□ 0.31
UPF1-211ENST00000600868 ADCK5Q3MIX3 580 aa16.99■□□□□ 0.31
UPF1-211ENST00000600868 TATDN1Q6P1N9 297 aa16.99■□□□□ 0.31
UPF1-211ENST00000600868 MIGA2Q7L4E1 593 aa16.99■□□□□ 0.31
UPF1-211ENST00000600868 STK11IPQ8N1F8 1099 aa16.99■□□□□ 0.31
UPF1-211ENST00000600868 TM6SF1Q9BZW5 370 aa16.99■□□□□ 0.31
UPF1-211ENST00000600868 KRT23Q9C075 422 aa16.99■□□□□ 0.31
UPF1-211ENST00000600868 MKNK2Q9HBH9 465 aa16.99■□□□□ 0.31
UPF1-211ENST00000600868 INCENPQ9NQS7 918 aa16.99■□□□□ 0.31
UPF1-211ENST00000600868 NEDD4P46934 1319 aa16.98■□□□□ 0.31
UPF1-211ENST00000600868 SSC5DA1L4H1 1573 aa16.98■□□□□ 0.31
UPF1-211ENST00000600868 SLURP2P0DP57 97 aa16.98■□□□□ 0.31
UPF1-211ENST00000600868 PSMA5P28066 241 aa16.98■□□□□ 0.31
UPF1-211ENST00000600868 NF2P35240 595 aa16.98■□□□□ 0.31
UPF1-211ENST00000600868 DLK2Q6UY11 383 aa16.98■□□□□ 0.31
UPF1-211ENST00000600868 NCOA7Q8NI08 942 aa16.98■□□□□ 0.31
UPF1-211ENST00000600868 NEK1Q96PY6 1258 aa16.98■□□□□ 0.31
UPF1-211ENST00000600868 FAM196BA6NMK8 535 aa16.97■□□□□ 0.31
UPF1-211ENST00000600868 PRDM1O75626 825 aa16.97■□□□□ 0.31
UPF1-211ENST00000600868 ITGBL1O95965 494 aaPredicted RBP16.97■□□□□ 0.31
UPF1-211ENST00000600868 HMGB1P09429 215 aaKnown RBP16.97■□□□□ 0.31
UPF1-211ENST00000600868 RASA1P20936 1047 aa16.97■□□□□ 0.31
UPF1-211ENST00000600868 RALYLQ86SE5 291 aaKnown RBP16.97■□□□□ 0.31
UPF1-211ENST00000600868 ZNF444Q8N0Y2 327 aaPredicted RBP16.97■□□□□ 0.31
UPF1-211ENST00000600868 ESR2Q92731 530 aa16.97■□□□□ 0.31
UPF1-211ENST00000600868 CCDC17Q96LX7 622 aa16.97■□□□□ 0.31
UPF1-211ENST00000600868 JAKMIP1Q96N16 626 aaKnown RBP16.97■□□□□ 0.31
UPF1-211ENST00000600868 KIF2CQ99661 725 aa16.97■□□□□ 0.31
UPF1-211ENST00000600868 ZNF341Q9BYN7 854 aa16.97■□□□□ 0.31
UPF1-211ENST00000600868 PHF20L1A8MW92 1017 aa16.96■□□□□ 0.31
UPF1-211ENST00000600868 B4E1Z4 1266 aa16.96■□□□□ 0.31
UPF1-211ENST00000600868 TRAF5O00463 557 aa16.96■□□□□ 0.31
UPF1-211ENST00000600868 TOMM70O94826 608 aa16.96■□□□□ 0.31
UPF1-211ENST00000600868 CERKLQ49MI3 558 aaPredicted RBP16.96■□□□□ 0.31
UPF1-211ENST00000600868 RRP12Q5JTH9 1297 aaKnown RBP16.96■□□□□ 0.31
UPF1-211ENST00000600868 MB21D2Q8IYB1 491 aaPredicted RBP16.96■□□□□ 0.31
UPF1-211ENST00000600868 RBM46Q8TBY0 533 aaKnown RBP16.96■□□□□ 0.31
UPF1-211ENST00000600868 ZSWIM6Q9HCJ5 1215 aa16.96■□□□□ 0.31
UPF1-211ENST00000600868 TOMM22Q9NS69 142 aa16.96■□□□□ 0.31
UPF1-211ENST00000600868 ZNF112Q9UJU3 913 aa16.96■□□□□ 0.31
UPF1-211ENST00000600868 MYH8P13535 1937 aa16.96■□□□□ 0.3
UPF1-211ENST00000600868 PPP1R12BO60237 982 aaPredicted RBP16.95■□□□□ 0.3
UPF1-211ENST00000600868 RANBP6O60518 1105 aaKnown RBP16.95■□□□□ 0.3
UPF1-211ENST00000600868 USP2O75604 605 aaPredicted RBP16.95■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms