RNA–Protein interactions for RNA: ENST00000599138.5

VRK3-215, Transcript of vaccinia related kinase 3, humanhuman

TSL 4

Gene VRK3, Length 503 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-215ENST00000599138 ADD2P35612 726 aa11.76□□□□□ -0.53
VRK3-215ENST00000599138 MOGSQ13724 837 aa11.76□□□□□ -0.53
VRK3-215ENST00000599138 RRP1BQ14684 758 aaKnown RBP11.76□□□□□ -0.53
VRK3-215ENST00000599138 FOXP4Q8IVH2 680 aaPredicted RBP11.76□□□□□ -0.53
VRK3-215ENST00000599138 FAM43AQ8N2R8 423 aa11.76□□□□□ -0.53
VRK3-215ENST00000599138 DNAJC18Q9H819 358 aa11.76□□□□□ -0.53
VRK3-215ENST00000599138 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.76□□□□□ -0.53
VRK3-215ENST00000599138 ZCCHC17Q9NP64 241 aaKnown RBP11.76□□□□□ -0.53
VRK3-215ENST00000599138 PALD1Q9ULE6 856 aa11.76□□□□□ -0.53
VRK3-215ENST00000599138 DDX60LQ5H9U9 1706 aaKnown RBP11.75□□□□□ -0.53
VRK3-215ENST00000599138 MAGEB6P1A0A0J9YX57 407 aa11.75□□□□□ -0.53
VRK3-215ENST00000599138 FAM196BA6NMK8 535 aa11.75□□□□□ -0.53
VRK3-215ENST00000599138 BTBD19C9JJ37 291 aa11.75□□□□□ -0.53
VRK3-215ENST00000599138 CRHR2Q13324 411 aa11.75□□□□□ -0.53
VRK3-215ENST00000599138 UBE3CQ15386 1083 aa11.75□□□□□ -0.53
VRK3-215ENST00000599138 EXOC6Q8TAG9 804 aa11.75□□□□□ -0.53
VRK3-215ENST00000599138 GCC1Q96CN9 775 aa11.75□□□□□ -0.53
VRK3-215ENST00000599138 PICK1Q9NRD5 415 aa11.75□□□□□ -0.53
VRK3-215ENST00000599138 AFG3L2Q9Y4W6 797 aa11.75□□□□□ -0.53
VRK3-215ENST00000599138 SUPT16HQ9Y5B9 1047 aaKnown RBP11.75□□□□□ -0.53
VRK3-215ENST00000599138 TTC41PQ6P2S7 1318 aa11.75□□□□□ -0.53
VRK3-215ENST00000599138 SALL3Q9BXA9 1300 aa11.75□□□□□ -0.53
VRK3-215ENST00000599138 ATAD5Q96QE3 1844 aa11.74□□□□□ -0.53
VRK3-215ENST00000599138 FKTNO75072 461 aa11.74□□□□□ -0.53
VRK3-215ENST00000599138 CHGBP05060 677 aa11.74□□□□□ -0.53
VRK3-215ENST00000599138 CAP2P40123 477 aa11.74□□□□□ -0.53
VRK3-215ENST00000599138 SLFNL1Q499Z3 407 aa11.74□□□□□ -0.53
VRK3-215ENST00000599138 TSHZ3Q63HK5 1081 aa11.74□□□□□ -0.53
VRK3-215ENST00000599138 CTU1Q7Z7A3 348 aaKnown RBP11.74□□□□□ -0.53
VRK3-215ENST00000599138 PI4K2BQ8TCG2 481 aa11.74□□□□□ -0.53
VRK3-215ENST00000599138 OTUD7AQ8TE49 926 aaPredicted RBP11.74□□□□□ -0.53
VRK3-215ENST00000599138 GPATCH3Q96I76 525 aa11.74□□□□□ -0.53
VRK3-215ENST00000599138 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.74□□□□□ -0.53
VRK3-215ENST00000599138 MCOLN1Q9GZU1 580 aa11.74□□□□□ -0.53
VRK3-215ENST00000599138 SAP30BPQ9UHR5 308 aaKnown RBP11.74□□□□□ -0.53
VRK3-215ENST00000599138 ZHX2Q9Y6X8 837 aa11.74□□□□□ -0.53
VRK3-215ENST00000599138 A0A0G2JLL6 359 aaPredicted RBP11.73□□□□□ -0.53
VRK3-215ENST00000599138 USP5P45974 858 aa11.73□□□□□ -0.53
VRK3-215ENST00000599138 DGKZQ13574 1117 aa11.73□□□□□ -0.53
VRK3-215ENST00000599138 TAF1CQ15572 869 aaPredicted RBP11.73□□□□□ -0.53
VRK3-215ENST00000599138 PRRT2Q7Z6L0 340 aaPredicted RBP11.73□□□□□ -0.53
VRK3-215ENST00000599138 ANKRD23Q86SG2 305 aa11.73□□□□□ -0.53
VRK3-215ENST00000599138 SMC5Q8IY18 1101 aa11.73□□□□□ -0.53
VRK3-215ENST00000599138 LCORLQ8N3X6 602 aa11.73□□□□□ -0.53
VRK3-215ENST00000599138 KBTBD3Q8NAB2 608 aa11.73□□□□□ -0.53
VRK3-215ENST00000599138 ABHD8Q96I13 439 aa11.73□□□□□ -0.53
VRK3-215ENST00000599138 CRNKL1Q9BZJ0 848 aaKnown RBP11.73□□□□□ -0.53
VRK3-215ENST00000599138 EHD4Q9H223 541 aa11.73□□□□□ -0.53
VRK3-215ENST00000599138 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.73□□□□□ -0.53
VRK3-215ENST00000599138 NAV1Q8NEY1 1877 aa11.72□□□□□ -0.53
VRK3-215ENST00000599138 ERC2O15083 957 aa11.72□□□□□ -0.53
VRK3-215ENST00000599138 HLA-DOAP06340 250 aa11.72□□□□□ -0.53
VRK3-215ENST00000599138 MX1P20591 662 aa11.72□□□□□ -0.53
VRK3-215ENST00000599138 JAG1P78504 1218 aa11.72□□□□□ -0.53
VRK3-215ENST00000599138 ANKRD45Q5TZF3 282 aa11.72□□□□□ -0.53
VRK3-215ENST00000599138 ZSCAN25Q6NSZ9 544 aa11.72□□□□□ -0.53
VRK3-215ENST00000599138 GPAT2Q6NUI2 795 aa11.72□□□□□ -0.53
VRK3-215ENST00000599138 TATDN1Q6P1N9 297 aa11.72□□□□□ -0.53
VRK3-215ENST00000599138 TTC6Q86TZ1 520 aa11.72□□□□□ -0.53
VRK3-215ENST00000599138 TBC1D2Q9BYX2 928 aa11.72□□□□□ -0.53
VRK3-215ENST00000599138 RWDD1Q9H446 243 aaPredicted RBP11.72□□□□□ -0.53
VRK3-215ENST00000599138 ARMT1Q9H993 441 aa11.72□□□□□ -0.53
VRK3-215ENST00000599138 ZFYVE28Q9HCC9 887 aa11.72□□□□□ -0.53
VRK3-215ENST00000599138 DCP1AQ9NPI6 582 aaPredicted RBP11.72□□□□□ -0.53
VRK3-215ENST00000599138 GINM1Q9NU53 330 aa11.72□□□□□ -0.53
VRK3-215ENST00000599138 STAP2Q9UGK3 403 aa11.72□□□□□ -0.53
VRK3-215ENST00000599138 KIAA0100Q14667 2235 aaKnown RBP11.72□□□□□ -0.53
VRK3-215ENST00000599138 ADGRA2Q96PE1 1338 aa11.71□□□□□ -0.53
VRK3-215ENST00000599138 BAZ2AQ9UIF9 1905 aaKnown RBP11.71□□□□□ -0.53
VRK3-215ENST00000599138 TLR2O60603 784 aa11.71□□□□□ -0.53
VRK3-215ENST00000599138 GLRX3O76003 335 aaKnown RBP11.71□□□□□ -0.53
VRK3-215ENST00000599138 MBD4O95243 580 aa11.71□□□□□ -0.53
VRK3-215ENST00000599138 IGHDP01880 384 aa11.71□□□□□ -0.53
VRK3-215ENST00000599138 ASNSP08243 561 aa11.71□□□□□ -0.53
VRK3-215ENST00000599138 PLCD1P51178 756 aa11.71□□□□□ -0.53
VRK3-215ENST00000599138 GABPAQ06546 454 aa11.71□□□□□ -0.53
VRK3-215ENST00000599138 FASTKD5Q7L8L6 764 aaKnown RBP11.71□□□□□ -0.53
VRK3-215ENST00000599138 CCDC84Q86UT8 332 aaPredicted RBP11.71□□□□□ -0.53
VRK3-215ENST00000599138 CRACR2BQ8N4Y2 399 aaPredicted RBP11.71□□□□□ -0.53
VRK3-215ENST00000599138 SDR42E1Q8WUS8 393 aa11.71□□□□□ -0.53
VRK3-215ENST00000599138 WDR18Q9BV38 432 aa11.71□□□□□ -0.53
VRK3-215ENST00000599138 PUS7LQ9H0K6 701 aaKnown RBP11.71□□□□□ -0.53
VRK3-215ENST00000599138 SERPINB13Q9UIV8 391 aa11.71□□□□□ -0.53
VRK3-215ENST00000599138 TRIM75PA6NK02 468 aa11.7□□□□□ -0.54
VRK3-215ENST00000599138 USP17L5A8MUK1 530 aa11.7□□□□□ -0.54
VRK3-215ENST00000599138 PDHXO00330 501 aa11.7□□□□□ -0.54
VRK3-215ENST00000599138 RNF113AO15541 343 aaKnown RBP11.7□□□□□ -0.54
VRK3-215ENST00000599138 PRKAB2O43741 272 aa11.7□□□□□ -0.54
VRK3-215ENST00000599138 CAP1Q01518 475 aa11.7□□□□□ -0.54
VRK3-215ENST00000599138 SP3Q02447 781 aa11.7□□□□□ -0.54
VRK3-215ENST00000599138 PKN2Q16513 984 aaKnown RBP11.7□□□□□ -0.54
VRK3-215ENST00000599138 SHROOM1Q2M3G4 852 aaPredicted RBP11.7□□□□□ -0.54
VRK3-215ENST00000599138 ZNF280CQ8ND82 737 aa11.7□□□□□ -0.54
VRK3-215ENST00000599138 ATP8A2Q9NTI2 1148 aa11.7□□□□□ -0.54
VRK3-215ENST00000599138 MCM9Q9NXL9 1143 aa11.7□□□□□ -0.54
VRK3-215ENST00000599138 TAOK2Q9UL54 1235 aa11.7□□□□□ -0.54
VRK3-215ENST00000599138 SLC45A1Q9Y2W3 748 aa11.7□□□□□ -0.54
VRK3-215ENST00000599138 HTTP42858 3142 aa11.7□□□□□ -0.54
VRK3-215ENST00000599138 LOC285556D6RIA3 1793 aa11.69□□□□□ -0.54
VRK3-215ENST00000599138 ZFYP08048 801 aaPredicted RBP11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms