RNA–Protein interactions for RNA: ENST00000598907.5

SHKBP1-218, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 738 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-218ENST00000598907 KIF16BQ96L93 1317 aa17.29■□□□□ 0.36
SHKBP1-218ENST00000598907 FRMPD3Q5JV73 1810 aa17.29■□□□□ 0.36
SHKBP1-218ENST00000598907 F6X3S4 739 aa17.29■□□□□ 0.36
SHKBP1-218ENST00000598907 CCND3P30281 292 aaPredicted RBP17.29■□□□□ 0.36
SHKBP1-218ENST00000598907 ATN1P54259 1190 aaPredicted RBP17.29■□□□□ 0.36
SHKBP1-218ENST00000598907 SHHQ15465 462 aa17.29■□□□□ 0.36
SHKBP1-218ENST00000598907 MAP3K21Q5TCX8 1036 aa17.29■□□□□ 0.36
SHKBP1-218ENST00000598907 ZSCAN29Q8IWY8 852 aaPredicted RBP17.29■□□□□ 0.36
SHKBP1-218ENST00000598907 ARHGAP45Q92619 1136 aa17.29■□□□□ 0.36
SHKBP1-218ENST00000598907 PRKAG2Q9UGJ0 569 aa17.29■□□□□ 0.36
SHKBP1-218ENST00000598907 NOB1Q9ULX3 412 aaKnown RBP17.29■□□□□ 0.36
SHKBP1-218ENST00000598907 LOC285556D6RIA3 1793 aa17.28■□□□□ 0.36
SHKBP1-218ENST00000598907 MROH5Q6ZUA9 1318 aa17.28■□□□□ 0.36
SHKBP1-218ENST00000598907 METTL24Q5JXM2 366 aa17.28■□□□□ 0.36
SHKBP1-218ENST00000598907 SENP6Q9GZR1 1112 aaPredicted RBP17.28■□□□□ 0.36
SHKBP1-218ENST00000598907 USP40Q9NVE5 1235 aa17.28■□□□□ 0.36
SHKBP1-218ENST00000598907 SUGT1Q9Y2Z0 365 aa17.28■□□□□ 0.36
SHKBP1-218ENST00000598907 PTPRCP08575 1304 aa17.27■□□□□ 0.36
SHKBP1-218ENST00000598907 ZKSCAN1P17029 563 aaPredicted RBP17.27■□□□□ 0.36
SHKBP1-218ENST00000598907 GCLCP48506 637 aaPredicted RBP17.27■□□□□ 0.36
SHKBP1-218ENST00000598907 RRP1P56182 461 aaKnown RBP17.27■□□□□ 0.36
SHKBP1-218ENST00000598907 CACNB2Q08289 660 aaPredicted RBP17.27■□□□□ 0.36
SHKBP1-218ENST00000598907 GRM8O00222 908 aa17.26■□□□□ 0.35
SHKBP1-218ENST00000598907 PEX10O60683 326 aa17.26■□□□□ 0.35
SHKBP1-218ENST00000598907 RGS3P49796 1198 aa17.26■□□□□ 0.35
SHKBP1-218ENST00000598907 LRRC24Q50LG9 513 aa17.26■□□□□ 0.35
SHKBP1-218ENST00000598907 ZKSCAN2Q63HK3 967 aa17.26■□□□□ 0.35
SHKBP1-218ENST00000598907 PRDM5Q9NQX1 630 aaPredicted RBP17.26■□□□□ 0.35
SHKBP1-218ENST00000598907 IPO8O15397 1037 aaKnown RBP17.25■□□□□ 0.35
SHKBP1-218ENST00000598907 PRDX5P30044 214 aa17.25■□□□□ 0.35
SHKBP1-218ENST00000598907 MAP3K12Q12852 859 aa17.25■□□□□ 0.35
SHKBP1-218ENST00000598907 BEND3Q5T5X7 828 aa17.25■□□□□ 0.35
SHKBP1-218ENST00000598907 LHX8Q68G74 356 aa17.25■□□□□ 0.35
SHKBP1-218ENST00000598907 ATF7IPQ6VMQ6 1270 aa17.25■□□□□ 0.35
SHKBP1-218ENST00000598907 HMGCS2P54868 508 aa17.24■□□□□ 0.35
SHKBP1-218ENST00000598907 RTP1P59025 263 aa17.24■□□□□ 0.35
SHKBP1-218ENST00000598907 CCL14Q16627 93 aa17.24■□□□□ 0.35
SHKBP1-218ENST00000598907 SH3BP5LQ7L8J4 393 aa17.24■□□□□ 0.35
SHKBP1-218ENST00000598907 PROCA1Q8NCQ7 364 aaPredicted RBP17.24■□□□□ 0.35
SHKBP1-218ENST00000598907 SOCS4Q8WXH5 440 aa17.24■□□□□ 0.35
SHKBP1-218ENST00000598907 FRAT1Q92837 279 aaPredicted RBP17.24■□□□□ 0.35
SHKBP1-218ENST00000598907 NUDT12Q9BQG2 462 aa17.24■□□□□ 0.35
SHKBP1-218ENST00000598907 ASCC2Q9H1I8 757 aaPredicted RBP17.24■□□□□ 0.35
SHKBP1-218ENST00000598907 C9orf78Q9NZ63 289 aaPredicted RBP17.24■□□□□ 0.35
SHKBP1-218ENST00000598907 ATP11BQ9Y2G3 1177 aa17.24■□□□□ 0.35
SHKBP1-218ENST00000598907 FAM196BA6NMK8 535 aa17.23■□□□□ 0.35
SHKBP1-218ENST00000598907 CTNND1O60716 968 aaKnown RBP17.23■□□□□ 0.35
SHKBP1-218ENST00000598907 TRIM27P14373 513 aa17.23■□□□□ 0.35
SHKBP1-218ENST00000598907 HOXD11P31277 338 aaPredicted RBP17.23■□□□□ 0.35
SHKBP1-218ENST00000598907 SMAD3P84022 425 aaKnown RBP17.23■□□□□ 0.35
SHKBP1-218ENST00000598907 SPP2Q13103 211 aa17.23■□□□□ 0.35
SHKBP1-218ENST00000598907 PDE3AQ14432 1141 aa17.23■□□□□ 0.35
SHKBP1-218ENST00000598907 PPM1EQ8WY54 764 aa17.23■□□□□ 0.35
SHKBP1-218ENST00000598907 API5Q9BZZ5 524 aaKnown RBP17.23■□□□□ 0.35
SHKBP1-218ENST00000598907 DNAH12Q6ZR08 3092 aa17.22■□□□□ 0.35
SHKBP1-218ENST00000598907 DDTLA6NHG4 134 aaPredicted RBP17.22■□□□□ 0.35
SHKBP1-218ENST00000598907 PABPC4Q13310 644 aaKnown RBP eCLIP17.22■□□□□ 0.35
SHKBP1-218ENST00000598907 PICALMQ13492 652 aa17.22■□□□□ 0.35
SHKBP1-218ENST00000598907 WDR66Q8TBY9 1149 aa17.22■□□□□ 0.35
SHKBP1-218ENST00000598907 SUCLG2Q96I99 432 aa17.22■□□□□ 0.35
SHKBP1-218ENST00000598907 TNNQ9UQP3 1299 aa17.22■□□□□ 0.35
SHKBP1-218ENST00000598907 PDE8BO95263 885 aa17.21■□□□□ 0.35
SHKBP1-218ENST00000598907 VGLL2Q8N8G2 317 aa17.21■□□□□ 0.35
SHKBP1-218ENST00000598907 ADAMTS19Q8TE59 1207 aa17.21■□□□□ 0.35
SHKBP1-218ENST00000598907 BADQ92934 168 aa17.21■□□□□ 0.35
SHKBP1-218ENST00000598907 MORF4L1Q9UBU8 362 aa17.21■□□□□ 0.35
SHKBP1-218ENST00000598907 ATAD5Q96QE3 1844 aa17.21■□□□□ 0.35
SHKBP1-218ENST00000598907 RFX7Q2KHR2 1363 aa17.2■□□□□ 0.34
SHKBP1-218ENST00000598907 ENTPD3O75355 529 aa17.2■□□□□ 0.34
SHKBP1-218ENST00000598907 LDHBP07195 334 aaKnown RBP17.2■□□□□ 0.34
SHKBP1-218ENST00000598907 IFIT1P09914 478 aaKnown RBP17.2■□□□□ 0.34
SHKBP1-218ENST00000598907 XRCC5P13010 732 aaKnown RBP17.2■□□□□ 0.34
SHKBP1-218ENST00000598907 IRX3P78415 501 aaPredicted RBP17.2■□□□□ 0.34
SHKBP1-218ENST00000598907 GRIN2CQ14957 1233 aa17.2■□□□□ 0.34
SHKBP1-218ENST00000598907 KLHDC4Q8TBB5 520 aa17.2■□□□□ 0.34
SHKBP1-218ENST00000598907 MS4A1P11836 297 aa17.19■□□□□ 0.34
SHKBP1-218ENST00000598907 RLBP1P12271 317 aa17.19■□□□□ 0.34
SHKBP1-218ENST00000598907 PUM3Q15397 648 aaKnown RBP17.19■□□□□ 0.34
SHKBP1-218ENST00000598907 C20orf194Q5TEA3 1177 aa17.19■□□□□ 0.34
SHKBP1-218ENST00000598907 CCAR1Q8IX12 1150 aaKnown RBP17.19■□□□□ 0.34
SHKBP1-218ENST00000598907 TRMT44Q8IYL2 757 aaKnown RBP17.19■□□□□ 0.34
SHKBP1-218ENST00000598907 ZNF280CQ8ND82 737 aa17.19■□□□□ 0.34
SHKBP1-218ENST00000598907 TXNRD2Q9NNW7 524 aa17.19■□□□□ 0.34
SHKBP1-218ENST00000598907 CNGA1P29973 690 aa17.18■□□□□ 0.34
SHKBP1-218ENST00000598907 RGS2P41220 211 aa17.18■□□□□ 0.34
SHKBP1-218ENST00000598907 SLC4A10Q6U841 1118 aa17.18■□□□□ 0.34
SHKBP1-218ENST00000598907 KAZALD1Q96I82 304 aa17.18■□□□□ 0.34
SHKBP1-218ENST00000598907 RNPC3Q96LT9 517 aaKnown RBP17.18■□□□□ 0.34
SHKBP1-218ENST00000598907 APBA2Q99767 749 aa17.18■□□□□ 0.34
SHKBP1-218ENST00000598907 CWC22Q9HCG8 908 aaKnown RBP17.18■□□□□ 0.34
SHKBP1-218ENST00000598907 DDX4Q9NQI0 724 aaKnown RBP17.18■□□□□ 0.34
SHKBP1-218ENST00000598907 GPRC5AQ8NFJ5 357 aa17.17■□□□□ 0.34
SHKBP1-218ENST00000598907 CLUAP1Q96AJ1 413 aa17.17■□□□□ 0.34
SHKBP1-218ENST00000598907 UHRF1Q96T88 793 aaPredicted RBP17.17■□□□□ 0.34
SHKBP1-218ENST00000598907 PAGR1Q9BTK6 254 aa17.17■□□□□ 0.34
SHKBP1-218ENST00000598907 IDI2Q9BXS1 227 aa17.17■□□□□ 0.34
SHKBP1-218ENST00000598907 PORCNQ9H237 461 aa17.17■□□□□ 0.34
SHKBP1-218ENST00000598907 BICC1Q9H694 974 aaKnown RBP17.17■□□□□ 0.34
SHKBP1-218ENST00000598907 XPO5Q9HAV4 1204 aaKnown RBP eCLIP17.17■□□□□ 0.34
SHKBP1-218ENST00000598907 THEGQ9P2T0 379 aa17.17■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms