RNA–Protein interactions for RNA: ENST00000598553.1

VRK3-214, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 595 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-214ENST00000598553 ZFYVE28Q9HCC9 887 aa13.06□□□□□ -0.32
VRK3-214ENST00000598553 SAP30BPQ9UHR5 308 aaKnown RBP13.06□□□□□ -0.32
VRK3-214ENST00000598553 AFG3L2Q9Y4W6 797 aa13.06□□□□□ -0.32
VRK3-214ENST00000598553 PTCH2Q9Y6C5 1203 aa13.06□□□□□ -0.32
VRK3-214ENST00000598553 PLXNB2O15031 1838 aa13.06□□□□□ -0.32
VRK3-214ENST00000598553 A0A0G2JLL6 359 aaPredicted RBP13.05□□□□□ -0.32
VRK3-214ENST00000598553 NPM3O75607 178 aaKnown RBP13.05□□□□□ -0.32
VRK3-214ENST00000598553 IDH1O75874 414 aaKnown RBP13.05□□□□□ -0.32
VRK3-214ENST00000598553 LDHCP07864 332 aa13.05□□□□□ -0.32
VRK3-214ENST00000598553 CYP7A1P22680 504 aa13.05□□□□□ -0.32
VRK3-214ENST00000598553 PPP4CP60510 307 aa13.05□□□□□ -0.32
VRK3-214ENST00000598553 GSTO1P78417 241 aa13.05□□□□□ -0.32
VRK3-214ENST00000598553 PKN2Q16513 984 aaKnown RBP13.05□□□□□ -0.32
VRK3-214ENST00000598553 C17orf99Q6UX52 265 aa13.05□□□□□ -0.32
VRK3-214ENST00000598553 PRRT2Q7Z6L0 340 aaPredicted RBP13.05□□□□□ -0.32
VRK3-214ENST00000598553 ANKRD23Q86SG2 305 aa13.05□□□□□ -0.32
VRK3-214ENST00000598553 MAGEB6Q8N7X4 407 aa13.05□□□□□ -0.32
VRK3-214ENST00000598553 EFCC1Q9HA90 598 aa13.05□□□□□ -0.32
VRK3-214ENST00000598553 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.05□□□□□ -0.32
VRK3-214ENST00000598553 PALD1Q9ULE6 856 aa13.05□□□□□ -0.32
VRK3-214ENST00000598553 DDX19BQ9UMR2 479 aa13.05□□□□□ -0.32
VRK3-214ENST00000598553 KIAA0100Q14667 2235 aaKnown RBP13.05□□□□□ -0.32
VRK3-214ENST00000598553 TNRC18O15417 2968 aaPredicted RBP13.05□□□□□ -0.32
VRK3-214ENST00000598553 TRIM75PA6NK02 468 aa13.04□□□□□ -0.32
VRK3-214ENST00000598553 SMARCA5O60264 1052 aaPredicted RBP13.04□□□□□ -0.32
VRK3-214ENST00000598553 TREML2Q5T2D2 321 aa13.04□□□□□ -0.32
VRK3-214ENST00000598553 SMIM22K7EJ46 135 aa13.03□□□□□ -0.32
VRK3-214ENST00000598553 TBC1D12O60347 775 aa13.03□□□□□ -0.32
VRK3-214ENST00000598553 PEX10O60683 326 aa13.03□□□□□ -0.32
VRK3-214ENST00000598553 CTNND1O60716 968 aaKnown RBP13.03□□□□□ -0.32
VRK3-214ENST00000598553 GDF11O95390 407 aa13.03□□□□□ -0.32
VRK3-214ENST00000598553 MYCP01106 439 aaPredicted RBP13.03□□□□□ -0.32
VRK3-214ENST00000598553 LACTBP83111 547 aaPredicted RBP13.03□□□□□ -0.32
VRK3-214ENST00000598553 GADL1Q6ZQY3 521 aa13.03□□□□□ -0.32
VRK3-214ENST00000598553 CXCL11O14625 94 aa13.02□□□□□ -0.33
VRK3-214ENST00000598553 BCRP11274 1271 aa13.02□□□□□ -0.33
VRK3-214ENST00000598553 ERC1Q8IUD2 1116 aa13.02□□□□□ -0.33
VRK3-214ENST00000598553 RPAP2Q8IXW5 612 aaPredicted RBP13.02□□□□□ -0.33
VRK3-214ENST00000598553 KIF1BPQ96EK5 621 aa13.02□□□□□ -0.33
VRK3-214ENST00000598553 TRIM47Q96LD4 638 aa13.02□□□□□ -0.33
VRK3-214ENST00000598553 RIOK1Q9BRS2 568 aaKnown RBP13.02□□□□□ -0.33
VRK3-214ENST00000598553 ZCCHC17Q9NP64 241 aaKnown RBP13.02□□□□□ -0.33
VRK3-214ENST00000598553 PICK1Q9NRD5 415 aa13.02□□□□□ -0.33
VRK3-214ENST00000598553 CAP2P40123 477 aa13.01□□□□□ -0.33
VRK3-214ENST00000598553 SPP2Q13103 211 aa13.01□□□□□ -0.33
VRK3-214ENST00000598553 SH3TC2Q8TF17 1288 aa13.01□□□□□ -0.33
VRK3-214ENST00000598553 ARMC5Q96C12 935 aa13.01□□□□□ -0.33
VRK3-214ENST00000598553 DNAJC2Q99543 621 aaKnown RBP13.01□□□□□ -0.33
VRK3-214ENST00000598553 PARP14Q460N5 1801 aa13□□□□□ -0.33
VRK3-214ENST00000598553 TCRBV5S4A2TA0A5A2 114 aa13□□□□□ -0.33
VRK3-214ENST00000598553 GOLIM4O00461 696 aa13□□□□□ -0.33
VRK3-214ENST00000598553 MS4A1P11836 297 aa13□□□□□ -0.33
VRK3-214ENST00000598553 PDE6AP16499 860 aa13□□□□□ -0.33
VRK3-214ENST00000598553 OSBPP22059 807 aa13□□□□□ -0.33
VRK3-214ENST00000598553 TSHZ3Q63HK5 1081 aa13□□□□□ -0.33
VRK3-214ENST00000598553 ZNF333Q96JL9 665 aa13□□□□□ -0.33
VRK3-214ENST00000598553 BOLA2Q9H3K6 86 aa13□□□□□ -0.33
VRK3-214ENST00000598553 GABRQQ9UN88 632 aa13□□□□□ -0.33
VRK3-214ENST00000598553 CENPFP49454 3210 aa13□□□□□ -0.33
VRK3-214ENST00000598553 PDE4DIPQ5VU43 2346 aa13□□□□□ -0.33
VRK3-214ENST00000598553 ZNF532Q9HCE3 1301 aa12.99□□□□□ -0.33
VRK3-214ENST00000598553 BAG3O95817 575 aa12.99□□□□□ -0.33
VRK3-214ENST00000598553 MAP4K4O95819 1239 aaPredicted RBP12.99□□□□□ -0.33
VRK3-214ENST00000598553 CYP2D6P10635 497 aa12.99□□□□□ -0.33
VRK3-214ENST00000598553 EN2P19622 333 aaPredicted RBP12.99□□□□□ -0.33
VRK3-214ENST00000598553 PSMC4P43686 418 aa12.99□□□□□ -0.33
VRK3-214ENST00000598553 HMGCS2P54868 508 aa12.99□□□□□ -0.33
VRK3-214ENST00000598553 PDE3AQ14432 1141 aa12.99□□□□□ -0.33
VRK3-214ENST00000598553 POTEEQ6S8J3 1075 aa12.99□□□□□ -0.33
VRK3-214ENST00000598553 METTL16Q86W50 562 aaKnown RBP12.99□□□□□ -0.33
VRK3-214ENST00000598553 CLASRPQ8N2M8 674 aaKnown RBP12.99□□□□□ -0.33
VRK3-214ENST00000598553 LCORLQ8N3X6 602 aa12.99□□□□□ -0.33
VRK3-214ENST00000598553 PARK7Q99497 189 aaKnown RBP12.99□□□□□ -0.33
VRK3-214ENST00000598553 NOL10Q9BSC4 688 aaKnown RBP12.99□□□□□ -0.33
VRK3-214ENST00000598553 PI4KBQ9UBF8 816 aa12.99□□□□□ -0.33
VRK3-214ENST00000598553 PCDHB15Q9Y5E8 787 aa12.99□□□□□ -0.33
VRK3-214ENST00000598553 RLFQ13129 1914 aa12.99□□□□□ -0.33
VRK3-214ENST00000598553 PRKAB2O43741 272 aa12.98□□□□□ -0.33
VRK3-214ENST00000598553 PLCG2P16885 1265 aa12.98□□□□□ -0.33
VRK3-214ENST00000598553 PLCD1P51178 756 aa12.98□□□□□ -0.33
VRK3-214ENST00000598553 PRKCZQ05513 592 aa12.98□□□□□ -0.33
VRK3-214ENST00000598553 MTMR2Q13614 643 aa12.98□□□□□ -0.33
VRK3-214ENST00000598553 MTFR1Q15390 333 aa12.98□□□□□ -0.33
VRK3-214ENST00000598553 ZNF280CQ8ND82 737 aa12.98□□□□□ -0.33
VRK3-214ENST00000598553 SDR42E1Q8WUS8 393 aa12.98□□□□□ -0.33
VRK3-214ENST00000598553 HERC5Q9UII4 1024 aaKnown RBP12.98□□□□□ -0.33
VRK3-214ENST00000598553 ZBTB21Q9ULJ3 1066 aa12.98□□□□□ -0.33
VRK3-214ENST00000598553 AGTPBP1Q9UPW5 1226 aa12.98□□□□□ -0.33
VRK3-214ENST00000598553 BRCA2P51587 3418 aa12.97□□□□□ -0.33
VRK3-214ENST00000598553 HMMRO75330 724 aa12.97□□□□□ -0.33
VRK3-214ENST00000598553 IFIT2P09913 472 aaKnown RBP12.97□□□□□ -0.33
VRK3-214ENST00000598553 HSP90AB4PQ58FF6 505 aa12.97□□□□□ -0.33
VRK3-214ENST00000598553 ANKRD13CQ8N6S4 541 aa12.97□□□□□ -0.33
VRK3-214ENST00000598553 SLC44A5Q8NCS7 719 aa12.97□□□□□ -0.33
VRK3-214ENST00000598553 OTUD7AQ8TE49 926 aaPredicted RBP12.97□□□□□ -0.33
VRK3-214ENST00000598553 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.97□□□□□ -0.33
VRK3-214ENST00000598553 ARMT1Q9H993 441 aa12.97□□□□□ -0.33
VRK3-214ENST00000598553 SRRDQ9UH36 339 aa12.97□□□□□ -0.33
VRK3-214ENST00000598553 ALPK3Q96L96 1907 aa12.97□□□□□ -0.33
VRK3-214ENST00000598553 GREB1LQ9C091 1923 aaPredicted RBP12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms