RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 SHISA4Q96DD7 197 aa15.33■□□□□ 0.04
UPF1-203ENST00000594504 BIN2Q9UBW5 565 aaPredicted RBP15.33■□□□□ 0.04
UPF1-203ENST00000594504 FPGT-TNNI3KV9GXZ4 949 aa15.33■□□□□ 0.04
UPF1-203ENST00000594504 MYO5AQ9Y4I1 1855 aaKnown RBP15.33■□□□□ 0.04
UPF1-203ENST00000594504 NPM3O75607 178 aaKnown RBP15.32■□□□□ 0.04
UPF1-203ENST00000594504 SURF6O75683 361 aaKnown RBP15.32■□□□□ 0.04
UPF1-203ENST00000594504 SPP2Q13103 211 aa15.32■□□□□ 0.04
UPF1-203ENST00000594504 OS9Q13438 667 aaPredicted RBP15.32■□□□□ 0.04
UPF1-203ENST00000594504 ADGRA1Q86SQ6 560 aa15.32■□□□□ 0.04
UPF1-203ENST00000594504 ANKRD13CQ8N6S4 541 aa15.32■□□□□ 0.04
UPF1-203ENST00000594504 SSH3Q8TE77 659 aa15.32■□□□□ 0.04
UPF1-203ENST00000594504 GCC1Q96CN9 775 aa15.32■□□□□ 0.04
UPF1-203ENST00000594504 CHMP4BQ9H444 224 aaKnown RBP15.32■□□□□ 0.04
UPF1-203ENST00000594504 AATFQ9NY61 560 aaKnown RBP eCLIP15.32■□□□□ 0.04
UPF1-203ENST00000594504 COG6Q9Y2V7 657 aa15.32■□□□□ 0.04
UPF1-203ENST00000594504 HTTP42858 3142 aa15.32■□□□□ 0.04
UPF1-203ENST00000594504 CYP2E1P05181 493 aaPredicted RBP15.31■□□□□ 0.04
UPF1-203ENST00000594504 CCL5P13501 91 aa15.31■□□□□ 0.04
UPF1-203ENST00000594504 CCDC158Q5M9N0 1113 aa15.31■□□□□ 0.04
UPF1-203ENST00000594504 C20orf194Q5TEA3 1177 aa15.31■□□□□ 0.04
UPF1-203ENST00000594504 CCDC8Q9H0W5 538 aaPredicted RBP15.31■□□□□ 0.04
UPF1-203ENST00000594504 RNF208Q9H0X6 261 aa15.31■□□□□ 0.04
UPF1-203ENST00000594504 SLC45A1Q9Y2W3 748 aa15.31■□□□□ 0.04
UPF1-203ENST00000594504 ELNP15502 786 aa15.3■□□□□ 0.04
UPF1-203ENST00000594504 CAP2P40123 477 aa15.3■□□□□ 0.04
UPF1-203ENST00000594504 ZAP70P43403 619 aa15.3■□□□□ 0.04
UPF1-203ENST00000594504 FLT3LGP49771 235 aa15.3■□□□□ 0.04
UPF1-203ENST00000594504 RRP1P56182 461 aaKnown RBP15.3■□□□□ 0.04
UPF1-203ENST00000594504 JAG1P78504 1218 aa15.3■□□□□ 0.04
UPF1-203ENST00000594504 NAA16Q6N069 864 aaPredicted RBP15.3■□□□□ 0.04
UPF1-203ENST00000594504 MAPKAPK5Q8IW41 473 aa15.3■□□□□ 0.04
UPF1-203ENST00000594504 SMCR8Q8TEV9 937 aaPredicted RBP15.3■□□□□ 0.04
UPF1-203ENST00000594504 TGFBRAP1Q8WUH2 860 aa15.3■□□□□ 0.04
UPF1-203ENST00000594504 ATAD5Q96QE3 1844 aa15.3■□□□□ 0.04
UPF1-203ENST00000594504 UNC93B1Q9H1C4 597 aa15.3■□□□□ 0.04
UPF1-203ENST00000594504 GPR108Q9NPR9 543 aa15.3■□□□□ 0.04
UPF1-203ENST00000594504 TLR7Q9NYK1 1049 aaKnown RBP15.3■□□□□ 0.04
UPF1-203ENST00000594504 PCDH10Q9P2E7 1040 aa15.3■□□□□ 0.04
UPF1-203ENST00000594504 AGTPBP1Q9UPW5 1226 aa15.3■□□□□ 0.04
UPF1-203ENST00000594504 COLQQ9Y215 455 aaPredicted RBP15.3■□□□□ 0.04
UPF1-203ENST00000594504 H0YGN5 161 aa15.29■□□□□ 0.04
UPF1-203ENST00000594504 TNPO2O14787 897 aaKnown RBP15.29■□□□□ 0.04
UPF1-203ENST00000594504 ADCY3O60266 1144 aa15.29■□□□□ 0.04
UPF1-203ENST00000594504 MAP4K4O95819 1239 aaPredicted RBP15.29■□□□□ 0.04
UPF1-203ENST00000594504 HMGCS2P54868 508 aa15.29■□□□□ 0.04
UPF1-203ENST00000594504 SHROOM1Q2M3G4 852 aaPredicted RBP15.29■□□□□ 0.04
UPF1-203ENST00000594504 ZNF280CQ8ND82 737 aa15.29■□□□□ 0.04
UPF1-203ENST00000594504 NOL10Q9BSC4 688 aaKnown RBP15.29■□□□□ 0.04
UPF1-203ENST00000594504 PIH1D3Q9NQM4 214 aaKnown RBP15.29■□□□□ 0.04
UPF1-203ENST00000594504 TAOK2Q9UL54 1235 aa15.29■□□□□ 0.04
UPF1-203ENST00000594504 CENPFP49454 3210 aa15.29■□□□□ 0.04
UPF1-203ENST00000594504 SIPA1L1O43166 1804 aa15.29■□□□□ 0.04
UPF1-203ENST00000594504 DOCK3Q8IZD9 2030 aa15.28■□□□□ 0.04
UPF1-203ENST00000594504 GJB1P08034 283 aa15.28■□□□□ 0.04
UPF1-203ENST00000594504 GJA8P48165 433 aa15.28■□□□□ 0.04
UPF1-203ENST00000594504 DYNLL1P63167 89 aaKnown RBP15.28■□□□□ 0.04
UPF1-203ENST00000594504 UBXN2AP68543 259 aa15.28■□□□□ 0.04
UPF1-203ENST00000594504 DPF3Q92784 378 aa15.28■□□□□ 0.04
UPF1-203ENST00000594504 EAF2Q96CJ1 260 aaPredicted RBP15.28■□□□□ 0.04
UPF1-203ENST00000594504 ZBTB40Q9NUA8 1239 aa15.28■□□□□ 0.04
UPF1-203ENST00000594504 DBNLQ9UJU6 430 aaKnown RBP15.28■□□□□ 0.04
UPF1-203ENST00000594504 PALD1Q9ULE6 856 aa15.28■□□□□ 0.04
UPF1-203ENST00000594504 NDUFB9Q9Y6M9 179 aa15.28■□□□□ 0.04
UPF1-203ENST00000594504 CDK5RAP2Q96SN8 1893 aa15.27■□□□□ 0.04
UPF1-203ENST00000594504 USP17L5A8MUK1 530 aa15.27■□□□□ 0.04
UPF1-203ENST00000594504 PEX10O60683 326 aa15.27■□□□□ 0.04
UPF1-203ENST00000594504 BAG3O95817 575 aa15.27■□□□□ 0.04
UPF1-203ENST00000594504 PPP4CP60510 307 aa15.27■□□□□ 0.04
UPF1-203ENST00000594504 CEP85Q6P2H3 762 aa15.27■□□□□ 0.04
UPF1-203ENST00000594504 PROCA1Q8NCQ7 364 aaPredicted RBP15.27■□□□□ 0.04
UPF1-203ENST00000594504 SLAIN1Q8ND83 568 aa15.27■□□□□ 0.04
UPF1-203ENST00000594504 DNAJC18Q9H819 358 aa15.27■□□□□ 0.04
UPF1-203ENST00000594504 PI4KBQ9UBF8 816 aa15.27■□□□□ 0.04
UPF1-203ENST00000594504 SAP30BPQ9UHR5 308 aaKnown RBP15.27■□□□□ 0.04
UPF1-203ENST00000594504 NOP58Q9Y2X3 529 aaKnown RBP15.27■□□□□ 0.04
UPF1-203ENST00000594504 COL2A1P02458 1487 aaPredicted RBP15.27■□□□□ 0.03
UPF1-203ENST00000594504 GDF11O95390 407 aa15.26■□□□□ 0.03
UPF1-203ENST00000594504 NKX2-3Q8TAU0 364 aa15.26■□□□□ 0.03
UPF1-203ENST00000594504 U2AF1L4Q8WU68 220 aaKnown RBP15.26■□□□□ 0.03
UPF1-203ENST00000594504 HERC5Q9UII4 1024 aaKnown RBP15.26■□□□□ 0.03
UPF1-203ENST00000594504 FLT1P17948 1338 aa15.25■□□□□ 0.03
UPF1-203ENST00000594504 BRCA2P51587 3418 aa15.25■□□□□ 0.03
UPF1-203ENST00000594504 SGPL1O95470 568 aa15.25■□□□□ 0.03
UPF1-203ENST00000594504 INHAP05111 366 aa15.25■□□□□ 0.03
UPF1-203ENST00000594504 CYP7A1P22680 504 aa15.25■□□□□ 0.03
UPF1-203ENST00000594504 SH3D19Q5HYK7 790 aa15.25■□□□□ 0.03
UPF1-203ENST00000594504 UBE2Q1Q7Z7E8 422 aa15.25■□□□□ 0.03
UPF1-203ENST00000594504 FOXP4Q8IVH2 680 aaPredicted RBP15.25■□□□□ 0.03
UPF1-203ENST00000594504 ZNF512BQ96KM6 892 aaPredicted RBP15.25■□□□□ 0.03
UPF1-203ENST00000594504 ASCC2Q9H1I8 757 aaPredicted RBP15.25■□□□□ 0.03
UPF1-203ENST00000594504 DHX36Q9H2U1 1008 aaKnown RBP15.25■□□□□ 0.03
UPF1-203ENST00000594504 ANTXR1Q9H6X2 564 aa15.25■□□□□ 0.03
UPF1-203ENST00000594504 AS3MTQ9HBK9 375 aa15.25■□□□□ 0.03
UPF1-203ENST00000594504 PNMA3Q9UL41 463 aa15.25■□□□□ 0.03
UPF1-203ENST00000594504 MKI67P46013 3256 aaKnown RBP15.25■□□□□ 0.03
UPF1-203ENST00000594504 LOC285556D6RIA3 1793 aa15.24■□□□□ 0.03
UPF1-203ENST00000594504 PLCG2P16885 1265 aa15.24■□□□□ 0.03
UPF1-203ENST00000594504 FXR1P51114 621 aaKnown RBP eCLIP15.24■□□□□ 0.03
UPF1-203ENST00000594504 IRF5Q13568 498 aa15.24■□□□□ 0.03
UPF1-203ENST00000594504 MTMR2Q13614 643 aa15.24■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms