RNA–Protein interactions for RNA: ENST00000593223.1

SMAD4-216, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 568 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-216ENST00000593223 PCOLCE2Q9UKZ9 415 aa7.99□□□□□ -1.13
SMAD4-216ENST00000593223 TLR3O15455 904 aaKnown RBP7.98□□□□□ -1.13
SMAD4-216ENST00000593223 GSC2O15499 205 aa7.98□□□□□ -1.13
SMAD4-216ENST00000593223 CILPO75339 1184 aa7.98□□□□□ -1.13
SMAD4-216ENST00000593223 TCF3P15923 654 aa7.98□□□□□ -1.13
SMAD4-216ENST00000593223 KIAA0825Q8IV33 1275 aa7.98□□□□□ -1.13
SMAD4-216ENST00000593223 FBXL6Q8N531 539 aa7.98□□□□□ -1.13
SMAD4-216ENST00000593223 ZNF507Q8TCN5 953 aa7.98□□□□□ -1.13
SMAD4-216ENST00000593223 KRTAP9-2Q9BYQ4 174 aa7.98□□□□□ -1.13
SMAD4-216ENST00000593223 FAM221AA4D161 298 aa7.97□□□□□ -1.13
SMAD4-216ENST00000593223 GFRA2O00451 464 aa7.97□□□□□ -1.13
SMAD4-216ENST00000593223 IGLV1-40P01703 118 aa7.97□□□□□ -1.13
SMAD4-216ENST00000593223 GARTP22102 1010 aa7.97□□□□□ -1.13
SMAD4-216ENST00000593223 GRK4P32298 578 aa7.97□□□□□ -1.13
SMAD4-216ENST00000593223 NFIAQ12857 509 aa7.97□□□□□ -1.13
SMAD4-216ENST00000593223 RNF43Q68DV7 783 aa7.97□□□□□ -1.13
SMAD4-216ENST00000593223 FAM196AQ6ZSG2 479 aa7.97□□□□□ -1.13
SMAD4-216ENST00000593223 METTL16Q86W50 562 aaKnown RBP7.97□□□□□ -1.13
SMAD4-216ENST00000593223 ZNF654Q8IZM8 581 aa7.97□□□□□ -1.13
SMAD4-216ENST00000593223 KCT2Q8NC54 265 aa7.97□□□□□ -1.13
SMAD4-216ENST00000593223 GIMAP7Q8NHV1 300 aa7.97□□□□□ -1.13
SMAD4-216ENST00000593223 MFSD14AQ96MC6 490 aa7.97□□□□□ -1.13
SMAD4-216ENST00000593223 TBC1D32Q96NH3 1257 aa7.97□□□□□ -1.13
SMAD4-216ENST00000593223 DDX41Q9UJV9 622 aaKnown RBP7.97□□□□□ -1.13
SMAD4-216ENST00000593223 DYNC1LI2O43237 492 aaPredicted RBP7.96□□□□□ -1.14
SMAD4-216ENST00000593223 RING1Q06587 406 aa7.96□□□□□ -1.14
SMAD4-216ENST00000593223 PDE4BQ07343 736 aa7.96□□□□□ -1.14
SMAD4-216ENST00000593223 APOBRQ0VD83 1088 aa7.96□□□□□ -1.14
SMAD4-216ENST00000593223 MPP2Q14168 576 aa7.96□□□□□ -1.14
SMAD4-216ENST00000593223 CWF19L2Q2TBE0 894 aaKnown RBP7.96□□□□□ -1.14
SMAD4-216ENST00000593223 PRSS36Q5K4E3 855 aa7.96□□□□□ -1.14
SMAD4-216ENST00000593223 FBXO27Q8NI29 283 aa7.96□□□□□ -1.14
SMAD4-216ENST00000593223 DBNDD2Q9BQY9 259 aa7.96□□□□□ -1.14
SMAD4-216ENST00000593223 WNT10AQ9GZT5 417 aa7.96□□□□□ -1.14
SMAD4-216ENST00000593223 PRKAG2Q9UGJ0 569 aa7.96□□□□□ -1.14
SMAD4-216ENST00000593223 ROBO2Q9HCK4 1378 aa7.96□□□□□ -1.14
SMAD4-216ENST00000593223 KRTAP9-6A0A140TA67 174 aa7.95□□□□□ -1.14
SMAD4-216ENST00000593223 PGRP06401 933 aa7.95□□□□□ -1.14
SMAD4-216ENST00000593223 RACK1P63244 317 aaKnown RBP7.95□□□□□ -1.14
SMAD4-216ENST00000593223 UBP1Q9NZI7 540 aa7.95□□□□□ -1.14
SMAD4-216ENST00000593223 EPB41L3Q9Y2J2 1087 aaPredicted RBP7.95□□□□□ -1.14
SMAD4-216ENST00000593223 TACC3Q9Y6A5 838 aa7.95□□□□□ -1.14
SMAD4-216ENST00000593223 GRIN3BO60391 1043 aa7.94□□□□□ -1.14
SMAD4-216ENST00000593223 GREM1O60565 184 aa7.94□□□□□ -1.14
SMAD4-216ENST00000593223 PLCG1P19174 1290 aa7.94□□□□□ -1.14
SMAD4-216ENST00000593223 ERCC5P28715 1186 aaPredicted RBP7.94□□□□□ -1.14
SMAD4-216ENST00000593223 CDK5R2Q13319 367 aa7.94□□□□□ -1.14
SMAD4-216ENST00000593223 SEZ6Q53EL9 994 aa7.94□□□□□ -1.14
SMAD4-216ENST00000593223 REC114Q7Z4M0 266 aa7.94□□□□□ -1.14
SMAD4-216ENST00000593223 HID1Q8IV36 788 aa7.94□□□□□ -1.14
SMAD4-216ENST00000593223 CCSER2Q9H7U1 834 aa7.94□□□□□ -1.14
SMAD4-216ENST00000593223 KCNQ5Q9NR82 932 aa7.94□□□□□ -1.14
SMAD4-216ENST00000593223 ATG3Q9NT62 314 aa7.94□□□□□ -1.14
SMAD4-216ENST00000593223 WDR64B1ANS9 1081 aa7.93□□□□□ -1.14
SMAD4-216ENST00000593223 MCM4P33991 863 aa7.93□□□□□ -1.14
SMAD4-216ENST00000593223 NTF4P34130 210 aa7.93□□□□□ -1.14
SMAD4-216ENST00000593223 ZAR1Q86SH2 424 aa7.93□□□□□ -1.14
SMAD4-216ENST00000593223 SLC51AQ86UW1 340 aa7.93□□□□□ -1.14
SMAD4-216ENST00000593223 NKD1Q969G9 470 aa7.93□□□□□ -1.14
SMAD4-216ENST00000593223 PSMG3-AS1Q96PY0 264 aa7.93□□□□□ -1.14
SMAD4-216ENST00000593223 OSBPL1AQ9BXW6 950 aa7.93□□□□□ -1.14
SMAD4-216ENST00000593223 C1GALT1Q9NS00 363 aa7.93□□□□□ -1.14
SMAD4-216ENST00000593223 CORINQ9Y5Q5 1042 aa7.93□□□□□ -1.14
SMAD4-216ENST00000593223 ADMP35318 185 aa7.92□□□□□ -1.14
SMAD4-216ENST00000593223 CRKP46108 304 aa7.92□□□□□ -1.14
SMAD4-216ENST00000593223 SEZ6L2Q6UXD5 910 aa7.92□□□□□ -1.14
SMAD4-216ENST00000593223 UBE3DQ7Z6J8 389 aa7.92□□□□□ -1.14
SMAD4-216ENST00000593223 Q8N3U1 123 aa7.92□□□□□ -1.14
SMAD4-216ENST00000593223 SHKBP1Q8TBC3 707 aa7.92□□□□□ -1.14
SMAD4-216ENST00000593223 EAF1Q96JC9 268 aaPredicted RBP7.92□□□□□ -1.14
SMAD4-216ENST00000593223 NT5C1AQ9BXI3 368 aa7.92□□□□□ -1.14
SMAD4-216ENST00000593223 TGIF2Q9GZN2 237 aa7.92□□□□□ -1.14
SMAD4-216ENST00000593223 FBRSQ9HAH7 460 aa7.92□□□□□ -1.14
SMAD4-216ENST00000593223 BRMS1Q9HCU9 246 aa7.92□□□□□ -1.14
SMAD4-216ENST00000593223 FAM87AP0C7U9 286 aa7.91□□□□□ -1.14
SMAD4-216ENST00000593223 DUSP27Q5VZP5 1158 aa7.91□□□□□ -1.14
SMAD4-216ENST00000593223 ARMCX6Q7L4S7 300 aa7.91□□□□□ -1.14
SMAD4-216ENST00000593223 LRRC3Q9BY71 257 aa7.91□□□□□ -1.14
SMAD4-216ENST00000593223 POLR3KQ9Y2Y1 108 aaPredicted RBP7.91□□□□□ -1.14
SMAD4-216ENST00000593223 FAM170BA6NMN3 283 aa7.9□□□□□ -1.14
SMAD4-216ENST00000593223 LRIG2O94898 1065 aa7.9□□□□□ -1.14
SMAD4-216ENST00000593223 F13BP05160 661 aa7.9□□□□□ -1.14
SMAD4-216ENST00000593223 CYP27A1Q02318 531 aa7.9□□□□□ -1.14
SMAD4-216ENST00000593223 PAK2Q13177 524 aa7.9□□□□□ -1.14
SMAD4-216ENST00000593223 MLECQ14165 292 aa7.9□□□□□ -1.14
SMAD4-216ENST00000593223 NKG7Q16617 165 aa7.9□□□□□ -1.14
SMAD4-216ENST00000593223 GK5Q6ZS86 529 aa7.9□□□□□ -1.14
SMAD4-216ENST00000593223 TOP6BLQ8N6T0 577 aa7.9□□□□□ -1.14
SMAD4-216ENST00000593223 FOXQ1Q9C009 403 aa7.9□□□□□ -1.14
SMAD4-216ENST00000593223 ACBD3Q9H3P7 528 aa7.9□□□□□ -1.14
SMAD4-216ENST00000593223 ADAM30Q9UKF2 790 aa7.9□□□□□ -1.14
SMAD4-216ENST00000593223 PCDHB14Q9Y5E9 798 aa7.9□□□□□ -1.14
SMAD4-216ENST00000593223 HTR3BO95264 441 aa7.89□□□□□ -1.15
SMAD4-216ENST00000593223 ZNF165P49910 485 aa7.89□□□□□ -1.15
SMAD4-216ENST00000593223 RAD51AP2Q09MP3 1159 aa7.89□□□□□ -1.15
SMAD4-216ENST00000593223 SLBPQ14493 270 aaKnown RBP eCLIP7.89□□□□□ -1.15
SMAD4-216ENST00000593223 CYP27C1Q4G0S4 372 aa7.89□□□□□ -1.15
SMAD4-216ENST00000593223 SHISA5Q8N114 240 aa7.89□□□□□ -1.15
SMAD4-216ENST00000593223 XAGE3Q8WTP9 111 aa7.89□□□□□ -1.15
SMAD4-216ENST00000593223 TMEM87BQ96K49 555 aa7.89□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms