RNA–Protein interactions for RNA: ENST00000590347.5

CIRBP-228, Transcript of cold inducible RNA binding protein, humanhuman

TSL 2

Gene CIRBP, Length 3,117 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIRBP-228ENST00000590347 NEDD9Q14511 834 aa17.22■□□□□ 0.35
CIRBP-228ENST00000590347 NAA16Q6N069 864 aaPredicted RBP17.22■□□□□ 0.35
CIRBP-228ENST00000590347 KRT28Q7Z3Y7 464 aa17.22■□□□□ 0.35
CIRBP-228ENST00000590347 SMARCC2Q8TAQ2 1214 aa17.22■□□□□ 0.35
CIRBP-228ENST00000590347 MMS19Q96T76 1030 aa17.22■□□□□ 0.35
CIRBP-228ENST00000590347 ARHGEF10O15013 1369 aa17.22■□□□□ 0.35
CIRBP-228ENST00000590347 GOLGA6L9A6NEM1 432 aa17.22■□□□□ 0.35
CIRBP-228ENST00000590347 RXRAP19793 462 aa17.22■□□□□ 0.35
CIRBP-228ENST00000590347 BPIFA3Q9BQP9 254 aa17.22■□□□□ 0.35
CIRBP-228ENST00000590347 CHPF2Q9P2E5 772 aa17.22■□□□□ 0.35
CIRBP-228ENST00000590347 ADGRL3Q9HAR2 1447 aa17.22■□□□□ 0.35
CIRBP-228ENST00000590347 HAND2P61296 217 aa17.21■□□□□ 0.35
CIRBP-228ENST00000590347 CHRNA2Q15822 529 aa17.21■□□□□ 0.35
CIRBP-228ENST00000590347 IKBKBO14920 756 aa17.21■□□□□ 0.35
CIRBP-228ENST00000590347 SASH1O94885 1247 aa17.21■□□□□ 0.35
CIRBP-228ENST00000590347 CASP1P29466 404 aa17.21■□□□□ 0.35
CIRBP-228ENST00000590347 FCHSD1Q86WN1 690 aa17.21■□□□□ 0.35
CIRBP-228ENST00000590347 C8orf76Q96K31 380 aa17.21■□□□□ 0.35
CIRBP-228ENST00000590347 RTEL1Q9NZ71 1219 aa17.21■□□□□ 0.35
CIRBP-228ENST00000590347 PPP1R12AO14974 1030 aaPredicted RBP17.21■□□□□ 0.34
CIRBP-228ENST00000590347 ZNF185O15231 689 aa17.21■□□□□ 0.34
CIRBP-228ENST00000590347 EZH2Q15910 746 aaKnown RBP17.21■□□□□ 0.34
CIRBP-228ENST00000590347 ZNF530Q6P9A1 599 aaPredicted RBP17.21■□□□□ 0.34
CIRBP-228ENST00000590347 IQCA1Q86XH1 822 aa17.21■□□□□ 0.34
CIRBP-228ENST00000590347 CCDC148Q8NFR7 591 aa17.21■□□□□ 0.34
CIRBP-228ENST00000590347 IP6K1Q92551 441 aa17.21■□□□□ 0.34
CIRBP-228ENST00000590347 ARL8AQ96BM9 186 aa17.21■□□□□ 0.34
CIRBP-228ENST00000590347 NAPGQ99747 312 aaPredicted RBP17.21■□□□□ 0.34
CIRBP-228ENST00000590347 NRKQ7Z2Y5 1582 aa17.2■□□□□ 0.34
CIRBP-228ENST00000590347 CASP14P31944 242 aa17.2■□□□□ 0.34
CIRBP-228ENST00000590347 SEC24CP53992 1094 aa17.2■□□□□ 0.34
CIRBP-228ENST00000590347 APBA1Q02410 837 aa17.2■□□□□ 0.34
CIRBP-228ENST00000590347 METTL16Q86W50 562 aaKnown RBP17.2■□□□□ 0.34
CIRBP-228ENST00000590347 NBPF3Q9H094 633 aa17.2■□□□□ 0.34
CIRBP-228ENST00000590347 MAP3K5Q99683 1374 aa17.2■□□□□ 0.34
CIRBP-228ENST00000590347 AKR1B15C9JRZ8 316 aaPredicted RBP17.2■□□□□ 0.34
CIRBP-228ENST00000590347 POTEB2H3BUK9 544 aa17.2■□□□□ 0.34
CIRBP-228ENST00000590347 TBX2Q13207 712 aaPredicted RBP17.2■□□□□ 0.34
CIRBP-228ENST00000590347 SND1Q7KZF4 910 aaKnown RBP eCLIP17.2■□□□□ 0.34
CIRBP-228ENST00000590347 SELENOOQ9BVL4 669 aa17.2■□□□□ 0.34
CIRBP-228ENST00000590347 GBP3Q9H0R5 595 aa17.2■□□□□ 0.34
CIRBP-228ENST00000590347 MCM8Q9UJA3 840 aa17.2■□□□□ 0.34
CIRBP-228ENST00000590347 PIK3C2AO00443 1686 aa17.2■□□□□ 0.34
CIRBP-228ENST00000590347 GOLGA6BA6NDN3 693 aa17.19■□□□□ 0.34
CIRBP-228ENST00000590347 MYBL1P10243 752 aa17.19■□□□□ 0.34
CIRBP-228ENST00000590347 SARNPP82979 210 aaKnown RBP17.19■□□□□ 0.34
CIRBP-228ENST00000590347 MYSM1Q5VVJ2 828 aa17.19■□□□□ 0.34
CIRBP-228ENST00000590347 PSMB7Q99436 277 aa17.19■□□□□ 0.34
CIRBP-228ENST00000590347 TOPAZ1Q8N9V7 1692 aa17.19■□□□□ 0.34
CIRBP-228ENST00000590347 CARMIL3Q8ND23 1372 aa17.19■□□□□ 0.34
CIRBP-228ENST00000590347 CCT6AP40227 531 aaKnown RBP17.19■□□□□ 0.34
CIRBP-228ENST00000590347 IFT88Q13099 833 aa17.19■□□□□ 0.34
CIRBP-228ENST00000590347 SMYD4Q8IYR2 804 aaPredicted RBP17.19■□□□□ 0.34
CIRBP-228ENST00000590347 MYO6Q9UM54 1294 aa17.19■□□□□ 0.34
CIRBP-228ENST00000590347 GRIN2DO15399 1336 aa17.19■□□□□ 0.34
CIRBP-228ENST00000590347 UPP2O95045 317 aa17.19■□□□□ 0.34
CIRBP-228ENST00000590347 SLC7A5Q01650 507 aa17.19■□□□□ 0.34
CIRBP-228ENST00000590347 MAP2K1Q02750 393 aaPredicted RBP17.19■□□□□ 0.34
CIRBP-228ENST00000590347 SEMA3FQ13275 785 aa17.19■□□□□ 0.34
CIRBP-228ENST00000590347 SHC4Q6S5L8 630 aa17.19■□□□□ 0.34
CIRBP-228ENST00000590347 PPFIBP1Q86W92 1011 aa17.19■□□□□ 0.34
CIRBP-228ENST00000590347 ANKRD18AQ8IVF6 992 aa17.19■□□□□ 0.34
CIRBP-228ENST00000590347 ZC3H4Q9UPT8 1303 aaKnown RBP17.18■□□□□ 0.34
CIRBP-228ENST00000590347 PRAMEF22A3QJZ6 481 aa17.18■□□□□ 0.34
CIRBP-228ENST00000590347 MYO1BO43795 1136 aa17.18■□□□□ 0.34
CIRBP-228ENST00000590347 FNTAP49354 379 aa17.18■□□□□ 0.34
CIRBP-228ENST00000590347 GUCY1A3Q02108 690 aa17.18■□□□□ 0.34
CIRBP-228ENST00000590347 ANKRD24Q8TF21 1146 aa17.18■□□□□ 0.34
CIRBP-228ENST00000590347 COG1Q8WTW3 980 aa17.18■□□□□ 0.34
CIRBP-228ENST00000590347 UBE2Q2LH0YL09 131 aa17.18■□□□□ 0.34
CIRBP-228ENST00000590347 EIF3HO15372 352 aaKnown RBP eCLIP17.18■□□□□ 0.34
CIRBP-228ENST00000590347 PPARAQ07869 468 aa17.18■□□□□ 0.34
CIRBP-228ENST00000590347 CEP85LQ5SZL2 805 aa17.18■□□□□ 0.34
CIRBP-228ENST00000590347 ANO1Q5XXA6 986 aa17.18■□□□□ 0.34
CIRBP-228ENST00000590347 CAGE1Q8TC20 777 aa17.18■□□□□ 0.34
CIRBP-228ENST00000590347 HDAC7Q8WUI4 952 aa17.18■□□□□ 0.34
CIRBP-228ENST00000590347 TBC1D31Q96DN5 1066 aa17.18■□□□□ 0.34
CIRBP-228ENST00000590347 RNF225M0QZC1 329 aaPredicted RBP17.17■□□□□ 0.34
CIRBP-228ENST00000590347 OPLAHO14841 1288 aa17.17■□□□□ 0.34
CIRBP-228ENST00000590347 PDIA3P30101 505 aaKnown RBP17.17■□□□□ 0.34
CIRBP-228ENST00000590347 FXR1P51114 621 aaKnown RBP eCLIP17.17■□□□□ 0.34
CIRBP-228ENST00000590347 INHBEP58166 350 aa17.17■□□□□ 0.34
CIRBP-228ENST00000590347 C2orf54Q08AI8 447 aa17.17■□□□□ 0.34
CIRBP-228ENST00000590347 AIMP1Q12904 312 aaKnown RBP17.17■□□□□ 0.34
CIRBP-228ENST00000590347 POTEDQ86YR6 584 aa17.17■□□□□ 0.34
CIRBP-228ENST00000590347 C19orf44Q9H6X5 657 aa17.17■□□□□ 0.34
CIRBP-228ENST00000590347 NLRP2Q9NX02 1062 aa17.17■□□□□ 0.34
CIRBP-228ENST00000590347 SMARCAL1Q9NZC9 954 aa17.17■□□□□ 0.34
CIRBP-228ENST00000590347 KDRP35968 1356 aa17.17■□□□□ 0.34
CIRBP-228ENST00000590347 A0A1W2PQ27 194 aa17.17■□□□□ 0.34
CIRBP-228ENST00000590347 A0A1W2PQ64 194 aa17.17■□□□□ 0.34
CIRBP-228ENST00000590347 A0A1W2PQD8 194 aa17.17■□□□□ 0.34
CIRBP-228ENST00000590347 ENO4A6NNW6 628 aa17.17■□□□□ 0.34
CIRBP-228ENST00000590347 G3BP1Q13283 466 aaKnown RBP eCLIP17.17■□□□□ 0.34
CIRBP-228ENST00000590347 SLC9C2Q5TAH2 1124 aa17.17■□□□□ 0.34
CIRBP-228ENST00000590347 KCNG4Q8TDN1 519 aa17.17■□□□□ 0.34
CIRBP-228ENST00000590347 MED15Q96RN5 788 aa17.17■□□□□ 0.34
CIRBP-228ENST00000590347 KLC4Q9NSK0 619 aa17.17■□□□□ 0.34
CIRBP-228ENST00000590347 HOOK1Q9UJC3 728 aaKnown RBP17.17■□□□□ 0.34
CIRBP-228ENST00000590347 ATF3P18847 181 aa17.16■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms