RNA–Protein interactions for RNA: ENST00000586435.1

LIG3-209, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 588 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-209ENST00000586435 G3BP1Q13283 466 aaKnown RBP eCLIP14.62□□□□□ -0.07
LIG3-209ENST00000586435 FAM110CQ1W6H9 321 aa14.62□□□□□ -0.07
LIG3-209ENST00000586435 RNF208Q9H0X6 261 aa14.62□□□□□ -0.07
LIG3-209ENST00000586435 GPR108Q9NPR9 543 aa14.62□□□□□ -0.07
LIG3-209ENST00000586435 HERC5Q9UII4 1024 aaKnown RBP14.62□□□□□ -0.07
LIG3-209ENST00000586435 COLQQ9Y215 455 aaPredicted RBP14.62□□□□□ -0.07
LIG3-209ENST00000586435 H0YGN5 161 aa14.61□□□□□ -0.07
LIG3-209ENST00000586435 TNPO2O14787 897 aaKnown RBP14.61□□□□□ -0.07
LIG3-209ENST00000586435 ADCY3O60266 1144 aa14.61□□□□□ -0.07
LIG3-209ENST00000586435 FLT3LGP49771 235 aa14.61□□□□□ -0.07
LIG3-209ENST00000586435 TBC1D9Q6ZT07 1266 aa14.61□□□□□ -0.07
LIG3-209ENST00000586435 ZNF280CQ8ND82 737 aa14.61□□□□□ -0.07
LIG3-209ENST00000586435 U2AF1L4Q8WU68 220 aaKnown RBP14.61□□□□□ -0.07
LIG3-209ENST00000586435 HTATIP2Q9BUP3 242 aa14.61□□□□□ -0.07
LIG3-209ENST00000586435 RAI14Q9P0K7 980 aa14.61□□□□□ -0.07
LIG3-209ENST00000586435 FRMD4AQ9P2Q2 1039 aaPredicted RBP14.61□□□□□ -0.07
LIG3-209ENST00000586435 BIN2Q9UBW5 565 aaPredicted RBP14.61□□□□□ -0.07
LIG3-209ENST00000586435 TNNQ9UQP3 1299 aa14.61□□□□□ -0.07
LIG3-209ENST00000586435 FAM196BA6NMK8 535 aa14.6□□□□□ -0.07
LIG3-209ENST00000586435 BCAR3O75815 825 aa14.6□□□□□ -0.07
LIG3-209ENST00000586435 CAP2P40123 477 aa14.6□□□□□ -0.07
LIG3-209ENST00000586435 POLA2Q14181 598 aa14.6□□□□□ -0.07
LIG3-209ENST00000586435 TREML2Q5T2D2 321 aa14.6□□□□□ -0.07
LIG3-209ENST00000586435 CCDC84Q86UT8 332 aaPredicted RBP14.6□□□□□ -0.07
LIG3-209ENST00000586435 TEX11Q8IYF3 940 aa14.6□□□□□ -0.07
LIG3-209ENST00000586435 DHX36Q9H2U1 1008 aaKnown RBP14.6□□□□□ -0.07
LIG3-209ENST00000586435 LRP2BPQ9P2M1 347 aa14.6□□□□□ -0.07
LIG3-209ENST00000586435 SGPL1O95470 568 aa14.59□□□□□ -0.07
LIG3-209ENST00000586435 PLCG2P16885 1265 aa14.59□□□□□ -0.07
LIG3-209ENST00000586435 GCLCP48506 637 aaPredicted RBP14.59□□□□□ -0.07
LIG3-209ENST00000586435 SPP2Q13103 211 aa14.59□□□□□ -0.07
LIG3-209ENST00000586435 PABPC4Q13310 644 aaKnown RBP eCLIP14.59□□□□□ -0.07
LIG3-209ENST00000586435 TNNI3KQ59H18 835 aa14.59□□□□□ -0.07
LIG3-209ENST00000586435 SH3D19Q5HYK7 790 aa14.59□□□□□ -0.07
LIG3-209ENST00000586435 ANKRD13CQ8N6S4 541 aa14.59□□□□□ -0.07
LIG3-209ENST00000586435 SSH3Q8TE77 659 aa14.59□□□□□ -0.07
LIG3-209ENST00000586435 FRAT1Q92837 279 aaPredicted RBP14.59□□□□□ -0.07
LIG3-209ENST00000586435 CLUAP1Q96AJ1 413 aa14.59□□□□□ -0.07
LIG3-209ENST00000586435 COA7Q96BR5 231 aa14.59□□□□□ -0.07
LIG3-209ENST00000586435 ZNF512BQ96KM6 892 aaPredicted RBP14.59□□□□□ -0.07
LIG3-209ENST00000586435 NOL10Q9BSC4 688 aaKnown RBP14.59□□□□□ -0.07
LIG3-209ENST00000586435 UNC93B1Q9H1C4 597 aa14.59□□□□□ -0.07
LIG3-209ENST00000586435 AS3MTQ9HBK9 375 aa14.59□□□□□ -0.07
LIG3-209ENST00000586435 PI4KBQ9UBF8 816 aa14.59□□□□□ -0.07
LIG3-209ENST00000586435 FPGT-TNNI3KV9GXZ4 949 aa14.59□□□□□ -0.07
LIG3-209ENST00000586435 PLXNB2O15031 1838 aa14.59□□□□□ -0.07
LIG3-209ENST00000586435 ALPK3Q96L96 1907 aa14.58□□□□□ -0.07
LIG3-209ENST00000586435 USP17L5A8MUK1 530 aa14.58□□□□□ -0.08
LIG3-209ENST00000586435 FARP2O94887 1054 aaPredicted RBP14.58□□□□□ -0.08
LIG3-209ENST00000586435 BAG3O95817 575 aa14.58□□□□□ -0.08
LIG3-209ENST00000586435 INHAP05111 366 aa14.58□□□□□ -0.08
LIG3-209ENST00000586435 PPP4CP60510 307 aa14.58□□□□□ -0.08
LIG3-209ENST00000586435 ZKSCAN2Q63HK3 967 aa14.58□□□□□ -0.08
LIG3-209ENST00000586435 TMEM57Q8N5G2 664 aa14.58□□□□□ -0.08
LIG3-209ENST00000586435 SH3RF3Q8TEJ3 882 aaPredicted RBP14.58□□□□□ -0.08
LIG3-209ENST00000586435 DPF3Q92784 378 aa14.58□□□□□ -0.08
LIG3-209ENST00000586435 PAK6Q9NQU5 681 aaPredicted RBP14.58□□□□□ -0.08
LIG3-209ENST00000586435 MYH1P12882 1939 aa14.58□□□□□ -0.08
LIG3-209ENST00000586435 ELNP15502 786 aa14.57□□□□□ -0.08
LIG3-209ENST00000586435 HMGCS2P54868 508 aa14.57□□□□□ -0.08
LIG3-209ENST00000586435 RRP1BQ14684 758 aaKnown RBP14.57□□□□□ -0.08
LIG3-209ENST00000586435 CCDC158Q5M9N0 1113 aa14.57□□□□□ -0.08
LIG3-209ENST00000586435 TTC39AQ5SRH9 613 aa14.57□□□□□ -0.08
LIG3-209ENST00000586435 NAA16Q6N069 864 aaPredicted RBP14.57□□□□□ -0.08
LIG3-209ENST00000586435 METTL16Q86W50 562 aaKnown RBP14.57□□□□□ -0.08
LIG3-209ENST00000586435 DBNDD2Q9BQY9 259 aa14.57□□□□□ -0.08
LIG3-209ENST00000586435 WDR18Q9BV38 432 aa14.57□□□□□ -0.08
LIG3-209ENST00000586435 GINM1Q9NU53 330 aa14.57□□□□□ -0.08
LIG3-209ENST00000586435 AATFQ9NY61 560 aaKnown RBP eCLIP14.57□□□□□ -0.08
LIG3-209ENST00000586435 ASNSP08243 561 aa14.56□□□□□ -0.08
LIG3-209ENST00000586435 ATP8B2P98198 1209 aa14.56□□□□□ -0.08
LIG3-209ENST00000586435 CHRDL2Q6WN34 429 aa14.56□□□□□ -0.08
LIG3-209ENST00000586435 ASCC2Q9H1I8 757 aaPredicted RBP14.56□□□□□ -0.08
LIG3-209ENST00000586435 FLT1P17948 1338 aa14.56□□□□□ -0.08
LIG3-209ENST00000586435 CYP2E1P05181 493 aaPredicted RBP14.55□□□□□ -0.08
LIG3-209ENST00000586435 BACE1P56817 501 aa14.55□□□□□ -0.08
LIG3-209ENST00000586435 ADGRA1Q86SQ6 560 aa14.55□□□□□ -0.08
LIG3-209ENST00000586435 FOXP4Q8IVH2 680 aaPredicted RBP14.55□□□□□ -0.08
LIG3-209ENST00000586435 CRISPLD2Q9H0B8 497 aa14.55□□□□□ -0.08
LIG3-209ENST00000586435 PRO3102Q9H379 93 aa14.55□□□□□ -0.08
LIG3-209ENST00000586435 DNAJC18Q9H819 358 aa14.55□□□□□ -0.08
LIG3-209ENST00000586435 SNRKQ9NRH2 765 aa14.55□□□□□ -0.08
LIG3-209ENST00000586435 MORF4L1Q9UBU8 362 aa14.55□□□□□ -0.08
LIG3-209ENST00000586435 NOP58Q9Y2X3 529 aaKnown RBP14.55□□□□□ -0.08
LIG3-209ENST00000586435 NR2E3Q9Y5X4 410 aa14.55□□□□□ -0.08
LIG3-209ENST00000586435 C19orf81C9J6K1 198 aa14.54□□□□□ -0.08
LIG3-209ENST00000586435 HMGCRP04035 888 aa14.54□□□□□ -0.08
LIG3-209ENST00000586435 HOXA7P31268 230 aaPredicted RBP14.54□□□□□ -0.08
LIG3-209ENST00000586435 OS9Q13438 667 aaPredicted RBP14.54□□□□□ -0.08
LIG3-209ENST00000586435 TGFBRAP1Q8WUH2 860 aa14.54□□□□□ -0.08
LIG3-209ENST00000586435 DEFB118Q96PH6 123 aa14.54□□□□□ -0.08
LIG3-209ENST00000586435 RBM27Q9P2N5 1060 aaKnown RBP14.54□□□□□ -0.08
LIG3-209ENST00000586435 GJD2Q9UKL4 321 aa14.54□□□□□ -0.08
LIG3-209ENST00000586435 DDX60LQ5H9U9 1706 aaKnown RBP14.53□□□□□ -0.08
LIG3-209ENST00000586435 ZBTB7BO15156 539 aaPredicted RBP14.53□□□□□ -0.08
LIG3-209ENST00000586435 SURF6O75683 361 aaKnown RBP14.53□□□□□ -0.08
LIG3-209ENST00000586435 MTMR2Q13614 643 aa14.53□□□□□ -0.08
LIG3-209ENST00000586435 CERS3Q8IU89 383 aa14.53□□□□□ -0.08
LIG3-209ENST00000586435 MAPKAPK5Q8IW41 473 aa14.53□□□□□ -0.08
LIG3-209ENST00000586435 ANKLE1Q8NAG6 615 aa14.53□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms