RNA–Protein interactions for RNA: ENST00000585466.1

CLIP3-202, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 2

Gene CLIP3, Length 368 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-202ENST00000585466 GOLIM4O00461 696 aa18.46■□□□□ 0.55
CLIP3-202ENST00000585466 PDE6AP16499 860 aa18.46■□□□□ 0.55
CLIP3-202ENST00000585466 MAP3K12Q12852 859 aa18.46■□□□□ 0.55
CLIP3-202ENST00000585466 HAUS7Q99871 368 aa18.46■□□□□ 0.55
CLIP3-202ENST00000585466 NOL10Q9BSC4 688 aaKnown RBP18.46■□□□□ 0.55
CLIP3-202ENST00000585466 AFG3L2Q9Y4W6 797 aa18.46■□□□□ 0.55
CLIP3-202ENST00000585466 ADGRA2Q96PE1 1338 aa18.46■□□□□ 0.55
CLIP3-202ENST00000585466 NAV1Q8NEY1 1877 aa18.46■□□□□ 0.54
CLIP3-202ENST00000585466 LOC285556D6RIA3 1793 aa18.45■□□□□ 0.54
CLIP3-202ENST00000585466 JAG1P78504 1218 aa18.45■□□□□ 0.54
CLIP3-202ENST00000585466 TTF1Q15361 905 aaPredicted RBP18.45■□□□□ 0.54
CLIP3-202ENST00000585466 TAF1CQ15572 869 aaPredicted RBP18.45■□□□□ 0.54
CLIP3-202ENST00000585466 GPAT2Q6NUI2 795 aa18.45■□□□□ 0.54
CLIP3-202ENST00000585466 CCDC84Q86UT8 332 aaPredicted RBP18.45■□□□□ 0.54
CLIP3-202ENST00000585466 DNAJC2Q99543 621 aaKnown RBP18.45■□□□□ 0.54
CLIP3-202ENST00000585466 BOLA2Q9H3K6 86 aa18.45■□□□□ 0.54
CLIP3-202ENST00000585466 XPO5Q9HAV4 1204 aaKnown RBP eCLIP18.45■□□□□ 0.54
CLIP3-202ENST00000585466 PALD1Q9ULE6 856 aa18.45■□□□□ 0.54
CLIP3-202ENST00000585466 A0A0G2JLL6 359 aaPredicted RBP18.44■□□□□ 0.54
CLIP3-202ENST00000585466 CXCL11O14625 94 aa18.44■□□□□ 0.54
CLIP3-202ENST00000585466 SLFNL1Q499Z3 407 aa18.44■□□□□ 0.54
CLIP3-202ENST00000585466 PRRT2Q7Z6L0 340 aaPredicted RBP18.44■□□□□ 0.54
CLIP3-202ENST00000585466 ANKRD23Q86SG2 305 aa18.44■□□□□ 0.54
CLIP3-202ENST00000585466 DHX36Q9H2U1 1008 aaKnown RBP18.44■□□□□ 0.54
CLIP3-202ENST00000585466 PI4KBQ9UBF8 816 aa18.44■□□□□ 0.54
CLIP3-202ENST00000585466 HERC5Q9UII4 1024 aaKnown RBP18.44■□□□□ 0.54
CLIP3-202ENST00000585466 ZHX2Q9Y6X8 837 aa18.44■□□□□ 0.54
CLIP3-202ENST00000585466 CCDC85CA6NKD9 419 aa18.43■□□□□ 0.54
CLIP3-202ENST00000585466 CHGBP05060 677 aa18.43■□□□□ 0.54
CLIP3-202ENST00000585466 SHROOM1Q2M3G4 852 aaPredicted RBP18.43■□□□□ 0.54
CLIP3-202ENST00000585466 SLC9C2Q5TAH2 1124 aa18.43■□□□□ 0.54
CLIP3-202ENST00000585466 BCL11AQ9H165 835 aa18.43■□□□□ 0.54
CLIP3-202ENST00000585466 PICK1Q9NRD5 415 aa18.43■□□□□ 0.54
CLIP3-202ENST00000585466 PAG1Q9NWQ8 432 aa18.43■□□□□ 0.54
CLIP3-202ENST00000585466 ZNF532Q9HCE3 1301 aa18.43■□□□□ 0.54
CLIP3-202ENST00000585466 TLR2O60603 784 aa18.42■□□□□ 0.54
CLIP3-202ENST00000585466 CAP2P40123 477 aa18.42■□□□□ 0.54
CLIP3-202ENST00000585466 OTOP1Q7RTM1 612 aa18.42■□□□□ 0.54
CLIP3-202ENST00000585466 CERS3Q8IU89 383 aa18.42■□□□□ 0.54
CLIP3-202ENST00000585466 CD99L2Q8TCZ2 262 aa18.42■□□□□ 0.54
CLIP3-202ENST00000585466 ZFYVE28Q9HCC9 887 aa18.42■□□□□ 0.54
CLIP3-202ENST00000585466 SAP30BPQ9UHR5 308 aaKnown RBP18.42■□□□□ 0.54
CLIP3-202ENST00000585466 HPS5Q9UPZ3 1129 aa18.42■□□□□ 0.54
CLIP3-202ENST00000585466 ADD2P35612 726 aa18.41■□□□□ 0.54
CLIP3-202ENST00000585466 SP3Q02447 781 aa18.41■□□□□ 0.54
CLIP3-202ENST00000585466 PKN2Q16513 984 aaKnown RBP18.41■□□□□ 0.54
CLIP3-202ENST00000585466 PDHXO00330 501 aa18.4■□□□□ 0.54
CLIP3-202ENST00000585466 EVX2Q03828 476 aa18.4■□□□□ 0.54
CLIP3-202ENST00000585466 TSHZ3Q63HK5 1081 aa18.4■□□□□ 0.54
CLIP3-202ENST00000585466 FBXO46Q6PJ61 603 aaPredicted RBP18.4■□□□□ 0.54
CLIP3-202ENST00000585466 C17orf99Q6UX52 265 aa18.4■□□□□ 0.54
CLIP3-202ENST00000585466 FOXP4Q8IVH2 680 aaPredicted RBP18.4■□□□□ 0.54
CLIP3-202ENST00000585466 LCORLQ8N3X6 602 aa18.4■□□□□ 0.54
CLIP3-202ENST00000585466 ECHDC1Q9NTX5 307 aa18.4■□□□□ 0.54
CLIP3-202ENST00000585466 BAZ2AQ9UIF9 1905 aaKnown RBP18.39■□□□□ 0.53
CLIP3-202ENST00000585466 MAGEB6P1A0A0J9YX57 407 aa18.39■□□□□ 0.53
CLIP3-202ENST00000585466 SLC4A8Q2Y0W8 1093 aa18.39■□□□□ 0.53
CLIP3-202ENST00000585466 OTUD7AQ8TE49 926 aaPredicted RBP18.39■□□□□ 0.53
CLIP3-202ENST00000585466 ERO1AQ96HE7 468 aa18.39■□□□□ 0.53
CLIP3-202ENST00000585466 EHD4Q9H223 541 aa18.39■□□□□ 0.53
CLIP3-202ENST00000585466 SALL3Q9BXA9 1300 aa18.39■□□□□ 0.53
CLIP3-202ENST00000585466 TRIM75PA6NK02 468 aa18.38■□□□□ 0.53
CLIP3-202ENST00000585466 CTGFP29279 349 aa18.38■□□□□ 0.53
CLIP3-202ENST00000585466 ARHGAP39Q9C0H5 1083 aa18.38■□□□□ 0.53
CLIP3-202ENST00000585466 TRIM17Q9Y577 477 aa18.38■□□□□ 0.53
CLIP3-202ENST00000585466 USP5P45974 858 aa18.37■□□□□ 0.53
CLIP3-202ENST00000585466 RGS19P49795 217 aa18.37■□□□□ 0.53
CLIP3-202ENST00000585466 PLCD1P51178 756 aa18.37■□□□□ 0.53
CLIP3-202ENST00000585466 GABPAQ06546 454 aa18.37■□□□□ 0.53
CLIP3-202ENST00000585466 UBE3CQ15386 1083 aa18.37■□□□□ 0.53
CLIP3-202ENST00000585466 TATDN1Q6P1N9 297 aa18.37■□□□□ 0.53
CLIP3-202ENST00000585466 SLC45A1Q9Y2W3 748 aa18.37■□□□□ 0.53
CLIP3-202ENST00000585466 CENPFP49454 3210 aa18.37■□□□□ 0.53
CLIP3-202ENST00000585466 MGAMO43451 1857 aa18.37■□□□□ 0.53
CLIP3-202ENST00000585466 CYP2C8P10632 490 aa18.36■□□□□ 0.53
CLIP3-202ENST00000585466 BCRP11274 1271 aa18.36■□□□□ 0.53
CLIP3-202ENST00000585466 LACTBP83111 547 aaPredicted RBP18.36■□□□□ 0.53
CLIP3-202ENST00000585466 SPP2Q13103 211 aa18.36■□□□□ 0.53
CLIP3-202ENST00000585466 HDAC1Q13547 482 aaPredicted RBP18.36■□□□□ 0.53
CLIP3-202ENST00000585466 TREML2Q5T2D2 321 aa18.36■□□□□ 0.53
CLIP3-202ENST00000585466 FASTKD5Q7L8L6 764 aaKnown RBP18.36■□□□□ 0.53
CLIP3-202ENST00000585466 ZNF280CQ8ND82 737 aa18.36■□□□□ 0.53
CLIP3-202ENST00000585466 PI4K2BQ8TCG2 481 aa18.36■□□□□ 0.53
CLIP3-202ENST00000585466 SDR42E1Q8WUS8 393 aa18.36■□□□□ 0.53
CLIP3-202ENST00000585466 ARMT1Q9H993 441 aa18.36■□□□□ 0.53
CLIP3-202ENST00000585466 DCP1AQ9NPI6 582 aaPredicted RBP18.36■□□□□ 0.53
CLIP3-202ENST00000585466 CPA4Q9UI42 421 aa18.36■□□□□ 0.53
CLIP3-202ENST00000585466 PTPN22Q9Y2R2 807 aa18.36■□□□□ 0.53
CLIP3-202ENST00000585466 USP17L5A8MUK1 530 aa18.35■□□□□ 0.53
CLIP3-202ENST00000585466 PRKAB2O43741 272 aa18.35■□□□□ 0.53
CLIP3-202ENST00000585466 MBD4O95243 580 aa18.35■□□□□ 0.53
CLIP3-202ENST00000585466 GDF11O95390 407 aa18.35■□□□□ 0.53
CLIP3-202ENST00000585466 HLA-DOAP06340 250 aa18.35■□□□□ 0.53
CLIP3-202ENST00000585466 SHMT1P34896 483 aa18.35■□□□□ 0.53
CLIP3-202ENST00000585466 SH3D19Q5HYK7 790 aa18.35■□□□□ 0.53
CLIP3-202ENST00000585466 WDR18Q9BV38 432 aa18.35■□□□□ 0.53
CLIP3-202ENST00000585466 TBC1D2Q9BYX2 928 aa18.35■□□□□ 0.53
CLIP3-202ENST00000585466 CRNKL1Q9BZJ0 848 aaKnown RBP18.35■□□□□ 0.53
CLIP3-202ENST00000585466 EFCC1Q9HA90 598 aa18.35■□□□□ 0.53
CLIP3-202ENST00000585466 SERPINB13Q9UIV8 391 aa18.35■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms