RNA–Protein interactions for RNA: ENST00000585229.1

SMCHD1-212, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 4

Gene SMCHD1, Length 555 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-212ENST00000585229 MXD3Q9BW11 206 aa11.81□□□□□ -0.52
SMCHD1-212ENST00000585229 DAGLAQ9Y4D2 1042 aa11.81□□□□□ -0.52
SMCHD1-212ENST00000585229 GPR37O15354 613 aa11.8□□□□□ -0.52
SMCHD1-212ENST00000585229 RAD17O75943 681 aa11.8□□□□□ -0.52
SMCHD1-212ENST00000585229 NECTIN1Q15223 517 aa11.8□□□□□ -0.52
SMCHD1-212ENST00000585229 DIXDC1Q155Q3 683 aa11.8□□□□□ -0.52
SMCHD1-212ENST00000585229 VPS53Q5VIR6 699 aa11.8□□□□□ -0.52
SMCHD1-212ENST00000585229 CIAPIN1Q6FI81 312 aa11.8□□□□□ -0.52
SMCHD1-212ENST00000585229 SERPINA10Q9UK55 444 aa11.8□□□□□ -0.52
SMCHD1-212ENST00000585229 TTF2Q9UNY4 1162 aaKnown RBP11.8□□□□□ -0.52
SMCHD1-212ENST00000585229 RBM8AQ9Y5S9 174 aaKnown RBP11.8□□□□□ -0.52
SMCHD1-212ENST00000585229 BAZ2AQ9UIF9 1905 aaKnown RBP11.8□□□□□ -0.52
SMCHD1-212ENST00000585229 PPP1R3GB7ZBB8 358 aa11.79□□□□□ -0.52
SMCHD1-212ENST00000585229 MCCP23508 829 aa11.79□□□□□ -0.52
SMCHD1-212ENST00000585229 RPS12P25398 132 aaKnown RBP11.79□□□□□ -0.52
SMCHD1-212ENST00000585229 ANAPC15P60006 121 aa11.79□□□□□ -0.52
SMCHD1-212ENST00000585229 LSM11P83369 360 aaKnown RBP eCLIP11.79□□□□□ -0.52
SMCHD1-212ENST00000585229 TNIP1Q15025 636 aa11.79□□□□□ -0.52
SMCHD1-212ENST00000585229 TSGA10IPQ3SY00 556 aa11.79□□□□□ -0.52
SMCHD1-212ENST00000585229 GIMAP6Q6P9H5 292 aa11.79□□□□□ -0.52
SMCHD1-212ENST00000585229 MIGA1Q8NAN2 632 aa11.79□□□□□ -0.52
SMCHD1-212ENST00000585229 ZDHHC15Q96MV8 337 aa11.79□□□□□ -0.52
SMCHD1-212ENST00000585229 KIF2CQ99661 725 aa11.79□□□□□ -0.52
SMCHD1-212ENST00000585229 ARMT1Q9H993 441 aa11.79□□□□□ -0.52
SMCHD1-212ENST00000585229 GOLGB1Q14789 3259 aaKnown RBP11.79□□□□□ -0.52
SMCHD1-212ENST00000585229 ZC3H4Q9UPT8 1303 aaKnown RBP11.79□□□□□ -0.52
SMCHD1-212ENST00000585229 MYH1P12882 1939 aa11.78□□□□□ -0.52
SMCHD1-212ENST00000585229 GSG1L2A8MUP6 293 aa11.78□□□□□ -0.52
SMCHD1-212ENST00000585229 PATL2C9JE40 543 aaKnown RBP11.78□□□□□ -0.52
SMCHD1-212ENST00000585229 BAG3O95817 575 aa11.78□□□□□ -0.52
SMCHD1-212ENST00000585229 CRKP46108 304 aa11.78□□□□□ -0.52
SMCHD1-212ENST00000585229 EIF6P56537 245 aaKnown RBP11.78□□□□□ -0.52
SMCHD1-212ENST00000585229 RHBDL3P58872 404 aa11.78□□□□□ -0.52
SMCHD1-212ENST00000585229 DYNLL1P63167 89 aaKnown RBP11.78□□□□□ -0.52
SMCHD1-212ENST00000585229 KIAA0825Q8IV33 1275 aa11.78□□□□□ -0.52
SMCHD1-212ENST00000585229 MTMR14Q8NCE2 650 aa11.78□□□□□ -0.52
SMCHD1-212ENST00000585229 TEKT1Q969V4 418 aa11.78□□□□□ -0.52
SMCHD1-212ENST00000585229 ZBED2Q9BTP6 218 aa11.78□□□□□ -0.52
SMCHD1-212ENST00000585229 EPB41L4AQ9HCS5 686 aaPredicted RBP11.78□□□□□ -0.52
SMCHD1-212ENST00000585229 ATP8A2Q9NTI2 1148 aa11.78□□□□□ -0.52
SMCHD1-212ENST00000585229 AATFQ9NY61 560 aaKnown RBP eCLIP11.78□□□□□ -0.52
SMCHD1-212ENST00000585229 MKRN1Q9UHC7 482 aaKnown RBP11.78□□□□□ -0.52
SMCHD1-212ENST00000585229 SLC27A2O14975 620 aa11.77□□□□□ -0.53
SMCHD1-212ENST00000585229 GRIN3BO60391 1043 aa11.77□□□□□ -0.53
SMCHD1-212ENST00000585229 BTDP43251 543 aa11.77□□□□□ -0.53
SMCHD1-212ENST00000585229 ZNF280AP59817 542 aaPredicted RBP11.77□□□□□ -0.53
SMCHD1-212ENST00000585229 CREB3L3Q68CJ9 461 aa11.77□□□□□ -0.53
SMCHD1-212ENST00000585229 APOBEC3HQ6NTF7 200 aaKnown RBP11.77□□□□□ -0.53
SMCHD1-212ENST00000585229 DPF2Q92785 391 aa11.77□□□□□ -0.53
SMCHD1-212ENST00000585229 ZBED3Q96IU2 234 aaPredicted RBP11.77□□□□□ -0.53
SMCHD1-212ENST00000585229 CRNKL1Q9BZJ0 848 aaKnown RBP11.77□□□□□ -0.53
SMCHD1-212ENST00000585229 CTNNA3Q9UI47 895 aa11.77□□□□□ -0.53
SMCHD1-212ENST00000585229 PALD1Q9ULE6 856 aa11.77□□□□□ -0.53
SMCHD1-212ENST00000585229 SLC4A4Q9Y6R1 1079 aa11.77□□□□□ -0.53
SMCHD1-212ENST00000585229 ZNF541Q9H0D2 1346 aa11.77□□□□□ -0.53
SMCHD1-212ENST00000585229 F8W031 263 aaPredicted RBP11.76□□□□□ -0.53
SMCHD1-212ENST00000585229 PRKAB2O43741 272 aa11.76□□□□□ -0.53
SMCHD1-212ENST00000585229 FGAP02671 866 aa11.76□□□□□ -0.53
SMCHD1-212ENST00000585229 SCNN1DP51172 638 aa11.76□□□□□ -0.53
SMCHD1-212ENST00000585229 PTGDRQ13258 359 aa11.76□□□□□ -0.53
SMCHD1-212ENST00000585229 RNF20Q5VTR2 975 aa11.76□□□□□ -0.53
SMCHD1-212ENST00000585229 IFNL3Q8IZI9 196 aa11.76□□□□□ -0.53
SMCHD1-212ENST00000585229 IL27Q8NEV9 243 aa11.76□□□□□ -0.53
SMCHD1-212ENST00000585229 SH3RF3Q8TEJ3 882 aaPredicted RBP11.76□□□□□ -0.53
SMCHD1-212ENST00000585229 ZC3H15Q8WU90 426 aaKnown RBP11.76□□□□□ -0.53
SMCHD1-212ENST00000585229 NOL10Q9BSC4 688 aaKnown RBP11.76□□□□□ -0.53
SMCHD1-212ENST00000585229 HDAC9Q9UKV0 1011 aa11.76□□□□□ -0.53
SMCHD1-212ENST00000585229 RBM19Q9Y4C8 960 aaKnown RBP11.76□□□□□ -0.53
SMCHD1-212ENST00000585229 SNX14Q9Y5W7 946 aa11.76□□□□□ -0.53
SMCHD1-212ENST00000585229 COL2A1P02458 1487 aaPredicted RBP11.76□□□□□ -0.53
SMCHD1-212ENST00000585229 CYP21A2P08686 494 aa11.75□□□□□ -0.53
SMCHD1-212ENST00000585229 GPR162Q16538 588 aa11.75□□□□□ -0.53
SMCHD1-212ENST00000585229 PROX2Q3B8N5 592 aa11.75□□□□□ -0.53
SMCHD1-212ENST00000585229 SBK1Q52WX2 424 aa11.75□□□□□ -0.53
SMCHD1-212ENST00000585229 C9orf131Q5VYM1 1079 aa11.75□□□□□ -0.53
SMCHD1-212ENST00000585229 GPC2Q8N158 579 aa11.75□□□□□ -0.53
SMCHD1-212ENST00000585229 NACAP1Q9BZK3 213 aa11.75□□□□□ -0.53
SMCHD1-212ENST00000585229 TM6SF1Q9BZW5 370 aa11.75□□□□□ -0.53
SMCHD1-212ENST00000585229 DCP1AQ9NPI6 582 aaPredicted RBP11.75□□□□□ -0.53
SMCHD1-212ENST00000585229 RNF181Q9P0P0 153 aa11.75□□□□□ -0.53
SMCHD1-212ENST00000585229 ANAPC4Q9UJX5 808 aa11.75□□□□□ -0.53
SMCHD1-212ENST00000585229 ROBO3Q96MS0 1386 aa11.75□□□□□ -0.53
SMCHD1-212ENST00000585229 SIPA1L1O43166 1804 aa11.74□□□□□ -0.53
SMCHD1-212ENST00000585229 USP17L8P0C7I0 530 aa11.74□□□□□ -0.53
SMCHD1-212ENST00000585229 ZKSCAN1P17029 563 aaPredicted RBP11.74□□□□□ -0.53
SMCHD1-212ENST00000585229 GMPSP49915 693 aaPredicted RBP11.74□□□□□ -0.53
SMCHD1-212ENST00000585229 CFAP100Q494V2 611 aa11.74□□□□□ -0.53
SMCHD1-212ENST00000585229 CDC42EP5Q6NZY7 148 aa11.74□□□□□ -0.53
SMCHD1-212ENST00000585229 TEX11Q8IYF3 940 aa11.74□□□□□ -0.53
SMCHD1-212ENST00000585229 SDR42E1Q8WUS8 393 aa11.74□□□□□ -0.53
SMCHD1-212ENST00000585229 IDI2Q9BXS1 227 aa11.74□□□□□ -0.53
SMCHD1-212ENST00000585229 NBPF3Q9H094 633 aa11.74□□□□□ -0.53
SMCHD1-212ENST00000585229 NAPBQ9H115 298 aa11.74□□□□□ -0.53
SMCHD1-212ENST00000585229 PCDH10Q9P2E7 1040 aa11.74□□□□□ -0.53
SMCHD1-212ENST00000585229 FAM198AQ9UFP1 575 aa11.74□□□□□ -0.53
SMCHD1-212ENST00000585229 WDHD1O75717 1129 aaPredicted RBP11.73□□□□□ -0.53
SMCHD1-212ENST00000585229 FLT1P17948 1338 aa11.73□□□□□ -0.53
SMCHD1-212ENST00000585229 SCN4AP35499 1836 aa11.73□□□□□ -0.53
SMCHD1-212ENST00000585229 KRT32Q14532 448 aa11.73□□□□□ -0.53
SMCHD1-212ENST00000585229 RABEP1Q15276 862 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms