RNA–Protein interactions for RNA: ENST00000584755.1

UBBP4-202, Transcript of ubiquitin B pseudogene 4, humanhuman

TSL 1 (best) BASIC

Gene UBBP4, Length 1,459 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBBP4-202ENST00000584755 SMC3Q9UQE7 1217 aa16.45■□□□□ 0.22
UBBP4-202ENST00000584755 KLF18A0A0U1RQI7 1052 aa16.44■□□□□ 0.22
UBBP4-202ENST00000584755 IFIT3O14879 490 aaKnown RBP16.44■□□□□ 0.22
UBBP4-202ENST00000584755 MMP14P50281 582 aa16.44■□□□□ 0.22
UBBP4-202ENST00000584755 RASSF7Q02833 373 aa16.44■□□□□ 0.22
UBBP4-202ENST00000584755 STK3Q13188 491 aa16.44■□□□□ 0.22
UBBP4-202ENST00000584755 SART3Q15020 963 aaKnown RBP16.44■□□□□ 0.22
UBBP4-202ENST00000584755 SEC23AQ15436 765 aa16.44■□□□□ 0.22
UBBP4-202ENST00000584755 CFAP100Q494V2 611 aa16.44■□□□□ 0.22
UBBP4-202ENST00000584755 TMEM67Q5HYA8 995 aa16.44■□□□□ 0.22
UBBP4-202ENST00000584755 CIAPIN1Q6FI81 312 aa16.44■□□□□ 0.22
UBBP4-202ENST00000584755 C16orf86Q6ZW13 317 aa16.44■□□□□ 0.22
UBBP4-202ENST00000584755 STK11IPQ8N1F8 1099 aa16.44■□□□□ 0.22
UBBP4-202ENST00000584755 TMTC2Q8N394 836 aa16.44■□□□□ 0.22
UBBP4-202ENST00000584755 MTMR14Q8NCE2 650 aa16.44■□□□□ 0.22
UBBP4-202ENST00000584755 SAP30BPQ9UHR5 308 aaKnown RBP16.44■□□□□ 0.22
UBBP4-202ENST00000584755 PCDHAC2Q9Y5I4 1007 aa16.44■□□□□ 0.22
UBBP4-202ENST00000584755 NID2Q14112 1375 aa16.44■□□□□ 0.22
UBBP4-202ENST00000584755 FZD9O00144 591 aa16.43■□□□□ 0.22
UBBP4-202ENST00000584755 PRDM1O75626 825 aa16.43■□□□□ 0.22
UBBP4-202ENST00000584755 TNIP1Q15025 636 aa16.43■□□□□ 0.22
UBBP4-202ENST00000584755 SMARCC2Q8TAQ2 1214 aa16.43■□□□□ 0.22
UBBP4-202ENST00000584755 OSBPL5Q9H0X9 879 aaPredicted RBP16.43■□□□□ 0.22
UBBP4-202ENST00000584755 SENP2Q9HC62 589 aa16.43■□□□□ 0.22
UBBP4-202ENST00000584755 HDAC9Q9UKV0 1011 aa16.43■□□□□ 0.22
UBBP4-202ENST00000584755 GJB2P29033 226 aa16.42■□□□□ 0.22
UBBP4-202ENST00000584755 RCAN1P53805 252 aa16.42■□□□□ 0.22
UBBP4-202ENST00000584755 GABPAQ06546 454 aa16.42■□□□□ 0.22
UBBP4-202ENST00000584755 NFIAQ12857 509 aa16.42■□□□□ 0.22
UBBP4-202ENST00000584755 APOA5Q6Q788 366 aa16.42■□□□□ 0.22
UBBP4-202ENST00000584755 TTC6Q86TZ1 520 aa16.42■□□□□ 0.22
UBBP4-202ENST00000584755 DYNLL2Q96FJ2 89 aa16.42■□□□□ 0.22
UBBP4-202ENST00000584755 ZSCAN10Q96SZ4 725 aaPredicted RBP16.42■□□□□ 0.22
UBBP4-202ENST00000584755 SYT17Q9BSW7 474 aa16.42■□□□□ 0.22
UBBP4-202ENST00000584755 ZNF287Q9HBT7 754 aa16.42■□□□□ 0.22
UBBP4-202ENST00000584755 TAOK2Q9UL54 1235 aa16.42■□□□□ 0.22
UBBP4-202ENST00000584755 ZDHHC9Q9Y397 364 aa16.42■□□□□ 0.22
UBBP4-202ENST00000584755 COL2A1P02458 1487 aaPredicted RBP16.42■□□□□ 0.22
UBBP4-202ENST00000584755 TNKSO95271 1327 aa16.42■□□□□ 0.22
UBBP4-202ENST00000584755 ERICH2A1L162 156 aa16.42■□□□□ 0.22
UBBP4-202ENST00000584755 SPDYE2BA6NHP3 402 aa16.42■□□□□ 0.22
UBBP4-202ENST00000584755 GOLGA8BA8MQT2 603 aa16.42■□□□□ 0.22
UBBP4-202ENST00000584755 RANBP6O60518 1105 aaKnown RBP16.42■□□□□ 0.22
UBBP4-202ENST00000584755 BRD1O95696 1058 aa16.42■□□□□ 0.22
UBBP4-202ENST00000584755 SPDYE6P0CI01 402 aa16.42■□□□□ 0.22
UBBP4-202ENST00000584755 PDIA4P13667 645 aaKnown RBP16.42■□□□□ 0.22
UBBP4-202ENST00000584755 RPS12P25398 132 aaKnown RBP16.42■□□□□ 0.22
UBBP4-202ENST00000584755 RBM5P52756 815 aaKnown RBP eCLIP16.42■□□□□ 0.22
UBBP4-202ENST00000584755 PICALMQ13492 652 aa16.42■□□□□ 0.22
UBBP4-202ENST00000584755 PKP1Q13835 747 aa16.42■□□□□ 0.22
UBBP4-202ENST00000584755 WTAPQ15007 396 aa16.42■□□□□ 0.22
UBBP4-202ENST00000584755 CLEC17AQ6ZS10 378 aa16.42■□□□□ 0.22
UBBP4-202ENST00000584755 IQCA1Q86XH1 822 aa16.42■□□□□ 0.22
UBBP4-202ENST00000584755 OGFOD1Q8N543 542 aa16.42■□□□□ 0.22
UBBP4-202ENST00000584755 NSUN7Q8NE18 718 aaKnown RBP16.42■□□□□ 0.22
UBBP4-202ENST00000584755 ZBED3Q96IU2 234 aaPredicted RBP16.42■□□□□ 0.22
UBBP4-202ENST00000584755 PRMT6Q96LA8 375 aaPredicted RBP16.42■□□□□ 0.22
UBBP4-202ENST00000584755 UBAC1Q9BSL1 405 aa16.42■□□□□ 0.22
UBBP4-202ENST00000584755 FAM198AQ9UFP1 575 aa16.42■□□□□ 0.22
UBBP4-202ENST00000584755 ZBTB12Q9Y330 459 aaPredicted RBP16.42■□□□□ 0.22
UBBP4-202ENST00000584755 DICER1Q9UPY3 1922 aaKnown RBP16.41■□□□□ 0.22
UBBP4-202ENST00000584755 CTDNEP1O95476 244 aa16.41■□□□□ 0.22
UBBP4-202ENST00000584755 RASA1P20936 1047 aa16.41■□□□□ 0.22
UBBP4-202ENST00000584755 CDK8P49336 464 aa16.41■□□□□ 0.22
UBBP4-202ENST00000584755 ENAHQ8N8S7 591 aaPredicted RBP16.41■□□□□ 0.22
UBBP4-202ENST00000584755 TNPO1Q92973 898 aaKnown RBP16.41■□□□□ 0.22
UBBP4-202ENST00000584755 ZKSCAN3Q9BRR0 538 aa16.41■□□□□ 0.22
UBBP4-202ENST00000584755 EHD4Q9H223 541 aa16.41■□□□□ 0.22
UBBP4-202ENST00000584755 TCP11L1Q9NUJ3 509 aa16.41■□□□□ 0.22
UBBP4-202ENST00000584755 ATRNL1Q5VV63 1379 aa16.4■□□□□ 0.22
UBBP4-202ENST00000584755 DHX16O60231 1041 aaKnown RBP16.4■□□□□ 0.22
UBBP4-202ENST00000584755 ENTPD3O75355 529 aa16.4■□□□□ 0.22
UBBP4-202ENST00000584755 ZNF280AP59817 542 aaPredicted RBP16.4■□□□□ 0.22
UBBP4-202ENST00000584755 CCT2P78371 535 aaKnown RBP16.4■□□□□ 0.22
UBBP4-202ENST00000584755 SLC4A8Q2Y0W8 1093 aa16.4■□□□□ 0.22
UBBP4-202ENST00000584755 SLC44A5Q8NCS7 719 aa16.4■□□□□ 0.22
UBBP4-202ENST00000584755 ANKS1AQ92625 1134 aa16.4■□□□□ 0.22
UBBP4-202ENST00000584755 DHX36Q9H2U1 1008 aaKnown RBP16.4■□□□□ 0.22
UBBP4-202ENST00000584755 MKNK2Q9HBH9 465 aa16.4■□□□□ 0.22
UBBP4-202ENST00000584755 NCOA5Q9HCD5 579 aaKnown RBP16.4■□□□□ 0.22
UBBP4-202ENST00000584755 SIPA1L1O43166 1804 aa16.4■□□□□ 0.22
UBBP4-202ENST00000584755 CCDC69A6NI79 296 aa16.39■□□□□ 0.21
UBBP4-202ENST00000584755 ZBTB43O43298 467 aa16.39■□□□□ 0.21
UBBP4-202ENST00000584755 SYT1P21579 422 aa16.39■□□□□ 0.21
UBBP4-202ENST00000584755 HMGN5P82970 282 aaKnown RBP16.39■□□□□ 0.21
UBBP4-202ENST00000584755 DLGAP5Q15398 846 aa16.39■□□□□ 0.21
UBBP4-202ENST00000584755 CCDC178Q5BJE1 867 aa16.39■□□□□ 0.21
UBBP4-202ENST00000584755 DPF2Q92785 391 aa16.39■□□□□ 0.21
UBBP4-202ENST00000584755 TDRD3Q9H7E2 651 aaKnown RBP16.39■□□□□ 0.21
UBBP4-202ENST00000584755 SWAP70Q9UH65 585 aa16.39■□□□□ 0.21
UBBP4-202ENST00000584755 SLC12A7Q9Y666 1083 aa16.39■□□□□ 0.21
UBBP4-202ENST00000584755 PLIN4Q96Q06 1357 aa16.38■□□□□ 0.21
UBBP4-202ENST00000584755 TSPY2A6NKD2 308 aa16.38■□□□□ 0.21
UBBP4-202ENST00000584755 JAK2O60674 1132 aa16.38■□□□□ 0.21
UBBP4-202ENST00000584755 LMNB1P20700 586 aa16.38■□□□□ 0.21
UBBP4-202ENST00000584755 PDCP20941 246 aa16.38■□□□□ 0.21
UBBP4-202ENST00000584755 METAP2P50579 478 aaKnown RBP eCLIP16.38■□□□□ 0.21
UBBP4-202ENST00000584755 EIF6P56537 245 aaKnown RBP16.38■□□□□ 0.21
UBBP4-202ENST00000584755 TFAP4Q01664 338 aa16.38■□□□□ 0.21
UBBP4-202ENST00000584755 NFKBIBQ15653 356 aa16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms