RNA–Protein interactions for RNA: ENST00000583780.1

SHMT1-210, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 332 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-210ENST00000583780 LRCH3Q96II8 777 aa27.03■■□□□ 1.92
SHMT1-210ENST00000583780 TAOK2Q9UL54 1235 aa27.03■■□□□ 1.92
SHMT1-210ENST00000583780 A0A1B0GUL7 405 aa27.02■■□□□ 1.92
SHMT1-210ENST00000583780 ERICH6Q7L0X2 663 aa27.02■■□□□ 1.92
SHMT1-210ENST00000583780 XRN2Q9H0D6 950 aaKnown RBP eCLIP27.02■■□□□ 1.92
SHMT1-210ENST00000583780 OSBPL5Q9H0X9 879 aaPredicted RBP27.02■■□□□ 1.92
SHMT1-210ENST00000583780 XPO5Q9HAV4 1204 aaKnown RBP eCLIP27.02■■□□□ 1.92
SHMT1-210ENST00000583780 ATAD5Q96QE3 1844 aa27.02■■□□□ 1.92
SHMT1-210ENST00000583780 MNX1P50219 401 aaPredicted RBP27.01■■□□□ 1.91
SHMT1-210ENST00000583780 MEIS3Q99687 375 aa27.01■■□□□ 1.91
SHMT1-210ENST00000583780 GDF15Q99988 308 aa27.01■■□□□ 1.91
SHMT1-210ENST00000583780 PLXNB2O15031 1838 aa27.01■■□□□ 1.91
SHMT1-210ENST00000583780 LOC285556D6RIA3 1793 aa27.01■■□□□ 1.91
SHMT1-210ENST00000583780 TFCP2Q12800 502 aa27■■□□□ 1.91
SHMT1-210ENST00000583780 NECAB2Q7Z6G3 386 aa27■■□□□ 1.91
SHMT1-210ENST00000583780 ZNF280CQ8ND82 737 aa27■■□□□ 1.91
SHMT1-210ENST00000583780 SLC17A8Q8NDX2 589 aa27■■□□□ 1.91
SHMT1-210ENST00000583780 HMG20BQ9P0W2 317 aa27■■□□□ 1.91
SHMT1-210ENST00000583780 PNMA3Q9UL41 463 aa27■■□□□ 1.91
SHMT1-210ENST00000583780 CAP2P40123 477 aa26.99■■□□□ 1.91
SHMT1-210ENST00000583780 GCLCP48506 637 aaPredicted RBP26.99■■□□□ 1.91
SHMT1-210ENST00000583780 TRIM32Q13049 653 aa26.99■■□□□ 1.91
SHMT1-210ENST00000583780 TBC1D9Q6ZT07 1266 aa26.99■■□□□ 1.91
SHMT1-210ENST00000583780 NSUN4Q96CB9 384 aaKnown RBP26.99■■□□□ 1.91
SHMT1-210ENST00000583780 HDAC5Q9UQL6 1122 aa26.99■■□□□ 1.91
SHMT1-210ENST00000583780 BMP8BP34820 402 aa26.98■■□□□ 1.91
SHMT1-210ENST00000583780 HMGCS2P54868 508 aa26.98■■□□□ 1.91
SHMT1-210ENST00000583780 SH3D19Q5HYK7 790 aa26.98■■□□□ 1.91
SHMT1-210ENST00000583780 ANKLE1Q8NAG6 615 aa26.98■■□□□ 1.91
SHMT1-210ENST00000583780 ASCC2Q9H1I8 757 aaPredicted RBP26.98■■□□□ 1.91
SHMT1-210ENST00000583780 RPTORQ8N122 1335 aa26.97■■□□□ 1.91
SHMT1-210ENST00000583780 DLL1O00548 723 aa26.97■■□□□ 1.91
SHMT1-210ENST00000583780 PI16Q6UXB8 463 aa26.97■■□□□ 1.91
SHMT1-210ENST00000583780 AKAP2Q9Y2D5 859 aa26.97■■□□□ 1.91
SHMT1-210ENST00000583780 MAP4K4O95819 1239 aaPredicted RBP26.96■■□□□ 1.91
SHMT1-210ENST00000583780 HMGCRP04035 888 aa26.96■■□□□ 1.91
SHMT1-210ENST00000583780 MVPQ14764 893 aaKnown RBP26.96■■□□□ 1.91
SHMT1-210ENST00000583780 LDHCP07864 332 aa26.95■■□□□ 1.9
SHMT1-210ENST00000583780 TBC1D2Q9BYX2 928 aa26.95■■□□□ 1.9
SHMT1-210ENST00000583780 API5Q9BZZ5 524 aaKnown RBP26.95■■□□□ 1.9
SHMT1-210ENST00000583780 A0A0C4DFX4 3053 aa26.95■■□□□ 1.9
SHMT1-210ENST00000583780 COL2A1P02458 1487 aaPredicted RBP26.94■■□□□ 1.9
SHMT1-210ENST00000583780 USP17L5A8MUK1 530 aa26.94■■□□□ 1.9
SHMT1-210ENST00000583780 MTX1Q13505 466 aa26.94■■□□□ 1.9
SHMT1-210ENST00000583780 SPATA5Q8NB90 893 aa26.94■■□□□ 1.9
SHMT1-210ENST00000583780 NEUROD6Q96NK8 337 aa26.94■■□□□ 1.9
SHMT1-210ENST00000583780 HMX1Q9NP08 348 aaPredicted RBP26.94■■□□□ 1.9
SHMT1-210ENST00000583780 MORF4L1Q9UBU8 362 aa26.94■■□□□ 1.9
SHMT1-210ENST00000583780 SRGAP3O43295 1099 aa26.93■■□□□ 1.9
SHMT1-210ENST00000583780 JAG1P78504 1218 aa26.93■■□□□ 1.9
SHMT1-210ENST00000583780 PABPC4Q13310 644 aaKnown RBP eCLIP26.93■■□□□ 1.9
SHMT1-210ENST00000583780 ZMYND8Q9ULU4 1186 aaPredicted RBP26.93■■□□□ 1.9
SHMT1-210ENST00000583780 SIPA1L1O43166 1804 aa26.93■■□□□ 1.9
SHMT1-210ENST00000583780 PEX10O60683 326 aa26.92■■□□□ 1.9
SHMT1-210ENST00000583780 GSTO1P78417 241 aa26.92■■□□□ 1.9
SHMT1-210ENST00000583780 C7orf61Q8IZ16 206 aa26.92■■□□□ 1.9
SHMT1-210ENST00000583780 TRIB2Q92519 343 aa26.92■■□□□ 1.9
SHMT1-210ENST00000583780 NBPF3Q9H094 633 aa26.92■■□□□ 1.9
SHMT1-210ENST00000583780 OGDHLQ9ULD0 1010 aa26.92■■□□□ 1.9
SHMT1-210ENST00000583780 DDX60LQ5H9U9 1706 aaKnown RBP26.91■■□□□ 1.9
SHMT1-210ENST00000583780 CT47B1P0C2W7 299 aaPredicted RBP26.91■■□□□ 1.9
SHMT1-210ENST00000583780 ARID4AP29374 1257 aaPredicted RBP26.91■■□□□ 1.9
SHMT1-210ENST00000583780 MAP3K21Q5TCX8 1036 aa26.91■■□□□ 1.9
SHMT1-210ENST00000583780 P2RX7Q99572 595 aaKnown RBP26.91■■□□□ 1.9
SHMT1-210ENST00000583780 WDR18Q9BV38 432 aa26.91■■□□□ 1.9
SHMT1-210ENST00000583780 HERC5Q9UII4 1024 aaKnown RBP26.91■■□□□ 1.9
SHMT1-210ENST00000583780 HOXA7P31268 230 aaPredicted RBP26.9■■□□□ 1.9
SHMT1-210ENST00000583780 SH3RF3Q8TEJ3 882 aaPredicted RBP26.9■■□□□ 1.9
SHMT1-210ENST00000583780 RAI14Q9P0K7 980 aa26.9■■□□□ 1.9
SHMT1-210ENST00000583780 CYP2B6P20813 491 aa26.89■■□□□ 1.9
SHMT1-210ENST00000583780 MCAMP43121 646 aa26.89■■□□□ 1.9
SHMT1-210ENST00000583780 BACE1P56817 501 aa26.89■■□□□ 1.9
SHMT1-210ENST00000583780 GPR153Q6NV75 609 aa26.89■■□□□ 1.9
SHMT1-210ENST00000583780 TEX11Q8IYF3 940 aa26.89■■□□□ 1.9
SHMT1-210ENST00000583780 TXNRD2Q9NNW7 524 aa26.89■■□□□ 1.9
SHMT1-210ENST00000583780 PI4KBQ9UBF8 816 aa26.89■■□□□ 1.9
SHMT1-210ENST00000583780 CDK5RAP2Q96SN8 1893 aa26.88■■□□□ 1.89
SHMT1-210ENST00000583780 SYN1P17600 705 aa26.88■■□□□ 1.89
SHMT1-210ENST00000583780 C11orf49Q9H6J7 331 aa26.88■■□□□ 1.89
SHMT1-210ENST00000583780 AS3MTQ9HBK9 375 aa26.88■■□□□ 1.89
SHMT1-210ENST00000583780 GNAI3P08754 354 aa26.87■■□□□ 1.89
SHMT1-210ENST00000583780 Q3C1V9 767 aa26.87■■□□□ 1.89
SHMT1-210ENST00000583780 POTEEQ6S8J3 1075 aa26.87■■□□□ 1.89
SHMT1-210ENST00000583780 METTL16Q86W50 562 aaKnown RBP26.87■■□□□ 1.89
SHMT1-210ENST00000583780 DNAJC18Q9H819 358 aa26.87■■□□□ 1.89
SHMT1-210ENST00000583780 RBPJLQ9UBG7 517 aa26.87■■□□□ 1.89
SHMT1-210ENST00000583780 XRCC5P13010 732 aaKnown RBP26.86■■□□□ 1.89
SHMT1-210ENST00000583780 RARSP54136 660 aaKnown RBP26.86■■□□□ 1.89
SHMT1-210ENST00000583780 MTMR2Q13614 643 aa26.86■■□□□ 1.89
SHMT1-210ENST00000583780 SHROOM1Q2M3G4 852 aaPredicted RBP26.86■■□□□ 1.89
SHMT1-210ENST00000583780 LRIT3Q3SXY7 679 aa26.86■■□□□ 1.89
SHMT1-210ENST00000583780 ARHGAP45Q92619 1136 aa26.86■■□□□ 1.89
SHMT1-210ENST00000583780 USP6NLQ92738 828 aa26.86■■□□□ 1.89
SHMT1-210ENST00000583780 MYO5AQ9Y4I1 1855 aaKnown RBP26.86■■□□□ 1.89
SHMT1-210ENST00000583780 PFASO15067 1338 aa26.86■■□□□ 1.89
SHMT1-210ENST00000583780 MAGEA10P43363 369 aaPredicted RBP26.85■■□□□ 1.89
SHMT1-210ENST00000583780 GORABQ5T7V8 394 aa26.85■■□□□ 1.89
SHMT1-210ENST00000583780 DIEXFQ68CQ4 756 aaKnown RBP26.85■■□□□ 1.89
SHMT1-210ENST00000583780 DHX36Q9H2U1 1008 aaKnown RBP26.85■■□□□ 1.89
SHMT1-210ENST00000583780 LRP2BPQ9P2M1 347 aa26.85■■□□□ 1.89
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms