RNA–Protein interactions for RNA: ENST00000583344.1

SMCHD1-208, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 738 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-208ENST00000583344 GIPC1O14908 333 aa7.8□□□□□ -1.16
SMCHD1-208ENST00000583344 PTPN11Q06124 597 aaPredicted RBP7.8□□□□□ -1.16
SMCHD1-208ENST00000583344 ELMO3Q96BJ8 720 aa7.8□□□□□ -1.16
SMCHD1-208ENST00000583344 FANCGO15287 622 aa7.79□□□□□ -1.16
SMCHD1-208ENST00000583344 INPP5AQ14642 412 aa7.79□□□□□ -1.16
SMCHD1-208ENST00000583344 LRRC14Q15048 493 aa7.79□□□□□ -1.16
SMCHD1-208ENST00000583344 LRFN4Q6PJG9 635 aa7.79□□□□□ -1.16
SMCHD1-208ENST00000583344 ANKRD24Q8TF21 1146 aa7.79□□□□□ -1.16
SMCHD1-208ENST00000583344 TNKS2Q9H2K2 1166 aa7.79□□□□□ -1.16
SMCHD1-208ENST00000583344 FAM8A1Q9UBU6 413 aa7.79□□□□□ -1.16
SMCHD1-208ENST00000583344 CARMIL2Q6F5E8 1435 aa7.78□□□□□ -1.16
SMCHD1-208ENST00000583344 PRAMEF27A3QJZ7 478 aa7.78□□□□□ -1.16
SMCHD1-208ENST00000583344 LDHBP07195 334 aaKnown RBP7.78□□□□□ -1.16
SMCHD1-208ENST00000583344 CDC37L1Q7L3B6 337 aa7.78□□□□□ -1.16
SMCHD1-208ENST00000583344 ARMCX6Q7L4S7 300 aa7.78□□□□□ -1.16
SMCHD1-208ENST00000583344 LRRN4CLQ8ND94 238 aa7.78□□□□□ -1.16
SMCHD1-208ENST00000583344 PI4K2BQ8TCG2 481 aa7.78□□□□□ -1.16
SMCHD1-208ENST00000583344 TTF2Q9UNY4 1162 aaKnown RBP7.78□□□□□ -1.16
SMCHD1-208ENST00000583344 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.78□□□□□ -1.16
SMCHD1-208ENST00000583344 ANGEL2Q5VTE6 544 aaKnown RBP7.77□□□□□ -1.17
SMCHD1-208ENST00000583344 PDZRN4Q6ZMN7 1036 aaPredicted RBP7.77□□□□□ -1.17
SMCHD1-208ENST00000583344 SPACA3Q8IXA5 215 aa7.77□□□□□ -1.17
SMCHD1-208ENST00000583344 GAL3ST3Q96A11 431 aa7.77□□□□□ -1.17
SMCHD1-208ENST00000583344 PRDM7Q9NQW5 492 aa7.77□□□□□ -1.17
SMCHD1-208ENST00000583344 GTF2IRD1Q9UHL9 959 aa7.77□□□□□ -1.17
SMCHD1-208ENST00000583344 CYP8B1Q9UNU6 501 aa7.77□□□□□ -1.17
SMCHD1-208ENST00000583344 BIN1O00499 593 aa7.76□□□□□ -1.17
SMCHD1-208ENST00000583344 EOMESO95936 686 aa7.76□□□□□ -1.17
SMCHD1-208ENST00000583344 CDK8P49336 464 aa7.76□□□□□ -1.17
SMCHD1-208ENST00000583344 NKPD1Q17RQ9 610 aa7.76□□□□□ -1.17
SMCHD1-208ENST00000583344 ATG4DQ86TL0 474 aaPredicted RBP7.76□□□□□ -1.17
SMCHD1-208ENST00000583344 POU5F2Q8N7G0 328 aa7.76□□□□□ -1.17
SMCHD1-208ENST00000583344 PLPPR2Q96GM1 343 aa7.76□□□□□ -1.17
SMCHD1-208ENST00000583344 FBRSQ9HAH7 460 aa7.76□□□□□ -1.17
SMCHD1-208ENST00000583344 RNF19AQ9NV58 838 aa7.76□□□□□ -1.17
SMCHD1-208ENST00000583344 IGF2BP3O00425 579 aaKnown RBP eCLIP7.75□□□□□ -1.17
SMCHD1-208ENST00000583344 C8AP07357 584 aa7.75□□□□□ -1.17
SMCHD1-208ENST00000583344 SNX11Q9Y5W9 270 aa7.75□□□□□ -1.17
SMCHD1-208ENST00000583344 RBAK-RBAKDNI3L0D1 243 aa7.74□□□□□ -1.17
SMCHD1-208ENST00000583344 LRIG2O94898 1065 aa7.74□□□□□ -1.17
SMCHD1-208ENST00000583344 SLITRK5O94991 958 aa7.74□□□□□ -1.17
SMCHD1-208ENST00000583344 IKZF1Q13422 519 aa7.74□□□□□ -1.17
SMCHD1-208ENST00000583344 SCARA3Q6AZY7 606 aa7.74□□□□□ -1.17
SMCHD1-208ENST00000583344 TTBK2Q6IQ55 1244 aa7.74□□□□□ -1.17
SMCHD1-208ENST00000583344 CYFIP1Q7L576 1253 aa7.74□□□□□ -1.17
SMCHD1-208ENST00000583344 KCT2Q8NC54 265 aa7.74□□□□□ -1.17
SMCHD1-208ENST00000583344 ZNF507Q8TCN5 953 aa7.74□□□□□ -1.17
SMCHD1-208ENST00000583344 FAM168AQ92567 244 aa7.74□□□□□ -1.17
SMCHD1-208ENST00000583344 PRDM5Q9NQX1 630 aaPredicted RBP7.74□□□□□ -1.17
SMCHD1-208ENST00000583344 GNAT3A8MTJ3 354 aa7.73□□□□□ -1.17
SMCHD1-208ENST00000583344 EIF4BP23588 611 aaKnown RBP7.73□□□□□ -1.17
SMCHD1-208ENST00000583344 GNA15P30679 374 aa7.73□□□□□ -1.17
SMCHD1-208ENST00000583344 SLBPQ14493 270 aaKnown RBP eCLIP7.73□□□□□ -1.17
SMCHD1-208ENST00000583344 NKG7Q16617 165 aa7.73□□□□□ -1.17
SMCHD1-208ENST00000583344 WIPI1Q5MNZ9 446 aaPredicted RBP7.73□□□□□ -1.17
SMCHD1-208ENST00000583344 ZNF648Q5T619 568 aaPredicted RBP7.73□□□□□ -1.17
SMCHD1-208ENST00000583344 SLC23A3Q6PIS1 610 aa7.73□□□□□ -1.17
SMCHD1-208ENST00000583344 SV2BQ7L1I2 683 aa7.73□□□□□ -1.17
SMCHD1-208ENST00000583344 CNTNAP4Q9C0A0 1308 aa7.73□□□□□ -1.17
SMCHD1-208ENST00000583344 PRR33A8MZF0 331 aa7.72□□□□□ -1.17
SMCHD1-208ENST00000583344 ZP2Q05996 745 aa7.72□□□□□ -1.17
SMCHD1-208ENST00000583344 HDXQ7Z353 690 aa7.72□□□□□ -1.17
SMCHD1-208ENST00000583344 ASB11Q8WXH4 323 aa7.72□□□□□ -1.17
SMCHD1-208ENST00000583344 MIPEPQ99797 713 aa7.72□□□□□ -1.17
SMCHD1-208ENST00000583344 WNT10AQ9GZT5 417 aa7.72□□□□□ -1.17
SMCHD1-208ENST00000583344 PITPNM2Q9BZ72 1349 aa7.72□□□□□ -1.17
SMCHD1-208ENST00000583344 KRTAP4-8A0A0G2JLE6 195 aa7.71□□□□□ -1.18
SMCHD1-208ENST00000583344 ETF1P62495 437 aaKnown RBP7.71□□□□□ -1.18
SMCHD1-208ENST00000583344 SEPT6Q14141 434 aa7.71□□□□□ -1.18
SMCHD1-208ENST00000583344 CCDC85BQ15834 202 aaPredicted RBP7.71□□□□□ -1.18
SMCHD1-208ENST00000583344 TRAIPQ9BWF2 469 aa7.71□□□□□ -1.18
SMCHD1-208ENST00000583344 FOXQ1Q9C009 403 aa7.71□□□□□ -1.18
SMCHD1-208ENST00000583344 TPX2Q9ULW0 747 aaKnown RBP7.71□□□□□ -1.18
SMCHD1-208ENST00000583344 MAPK8IP1Q9UQF2 711 aa7.71□□□□□ -1.18
SMCHD1-208ENST00000583344 PCDHB5Q9Y5E4 795 aa7.71□□□□□ -1.18
SMCHD1-208ENST00000583344 PRPF40AO75400 957 aaKnown RBP7.7□□□□□ -1.18
SMCHD1-208ENST00000583344 CLCN7P51798 805 aa7.7□□□□□ -1.18
SMCHD1-208ENST00000583344 JAG1P78504 1218 aa7.7□□□□□ -1.18
SMCHD1-208ENST00000583344 FZD5Q13467 585 aa7.7□□□□□ -1.18
SMCHD1-208ENST00000583344 MAP3K11Q16584 847 aa7.7□□□□□ -1.18
SMCHD1-208ENST00000583344 FRMD6Q96NE9 622 aa7.7□□□□□ -1.18
SMCHD1-208ENST00000583344 DUSP9Q99956 384 aaKnown RBP7.7□□□□□ -1.18
SMCHD1-208ENST00000583344 FLAD1Q8NFF5 587 aa7.69□□□□□ -1.18
SMCHD1-208ENST00000583344 RIN3Q8TB24 985 aa7.69□□□□□ -1.18
SMCHD1-208ENST00000583344 XAGE3Q8WTP9 111 aa7.69□□□□□ -1.18
SMCHD1-208ENST00000583344 SNCAIPQ9Y6H5 919 aa7.69□□□□□ -1.18
SMCHD1-208ENST00000583344 FAM155AB1AL88 458 aaPredicted RBP7.68□□□□□ -1.18
SMCHD1-208ENST00000583344 GRK4P32298 578 aa7.68□□□□□ -1.18
SMCHD1-208ENST00000583344 FGD1P98174 961 aa7.68□□□□□ -1.18
SMCHD1-208ENST00000583344 SFRP5Q5T4F7 317 aa7.68□□□□□ -1.18
SMCHD1-208ENST00000583344 CDKAL1Q5VV42 579 aa7.68□□□□□ -1.18
SMCHD1-208ENST00000583344 PRAMEF13Q5VWM6 474 aa7.68□□□□□ -1.18
SMCHD1-208ENST00000583344 HSPA12BQ96MM6 686 aa7.68□□□□□ -1.18
SMCHD1-208ENST00000583344 ATP13A1Q9HD20 1204 aa7.68□□□□□ -1.18
SMCHD1-208ENST00000583344 AK5Q9Y6K8 562 aa7.68□□□□□ -1.18
SMCHD1-208ENST00000583344 ANKRD33BA6NCL7 494 aa7.67□□□□□ -1.18
SMCHD1-208ENST00000583344 CAP2P40123 477 aa7.67□□□□□ -1.18
SMCHD1-208ENST00000583344 ZNF124Q15973 351 aa7.67□□□□□ -1.18
SMCHD1-208ENST00000583344 MEI1Q5TIA1 1274 aa7.67□□□□□ -1.18
SMCHD1-208ENST00000583344 LETMD1Q6P1Q0 360 aa7.67□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms