RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 ADMP35318 185 aa10.69□□□□□ -0.7
SS18-214ENST00000580003 CYP27A1Q02318 531 aa10.69□□□□□ -0.7
SS18-214ENST00000580003 GOLM1Q8NBJ4 401 aa10.69□□□□□ -0.7
SS18-214ENST00000580003 METTL22Q9BUU2 404 aaPredicted RBP10.69□□□□□ -0.7
SS18-214ENST00000580003 WNT10AQ9GZT5 417 aa10.69□□□□□ -0.7
SS18-214ENST00000580003 TACC3Q9Y6A5 838 aa10.69□□□□□ -0.7
SS18-214ENST00000580003 UNCXA6NJT0 531 aa10.68□□□□□ -0.7
SS18-214ENST00000580003 NTF4P34130 210 aa10.68□□□□□ -0.7
SS18-214ENST00000580003 CDK5R2Q13319 367 aa10.68□□□□□ -0.7
SS18-214ENST00000580003 DUSP27Q5VZP5 1158 aa10.68□□□□□ -0.7
SS18-214ENST00000580003 GATAD2BQ8WXI9 593 aa10.68□□□□□ -0.7
SS18-214ENST00000580003 RNF34Q969K3 372 aa10.68□□□□□ -0.7
SS18-214ENST00000580003 GFRA2O00451 464 aa10.67□□□□□ -0.7
SS18-214ENST00000580003 F13A1P00488 732 aa10.67□□□□□ -0.7
SS18-214ENST00000580003 EIF4A3P38919 411 aaKnown RBP10.67□□□□□ -0.7
SS18-214ENST00000580003 FANCCQ00597 558 aa10.67□□□□□ -0.7
SS18-214ENST00000580003 CPSF6Q16630 551 aaKnown RBP eCLIP10.67□□□□□ -0.7
SS18-214ENST00000580003 GATA6Q92908 595 aa10.67□□□□□ -0.7
SS18-214ENST00000580003 KIAA1522Q9P206 1035 aaPredicted RBP10.67□□□□□ -0.7
SS18-214ENST00000580003 LEMD3Q9Y2U8 911 aa10.67□□□□□ -0.7
SS18-214ENST00000580003 FAM170BA6NMN3 283 aa10.66□□□□□ -0.7
SS18-214ENST00000580003 CILPO75339 1184 aa10.66□□□□□ -0.7
SS18-214ENST00000580003 GRIK1P39086 918 aa10.66□□□□□ -0.7
SS18-214ENST00000580003 PDE4BQ07343 736 aa10.66□□□□□ -0.7
SS18-214ENST00000580003 SHISA5Q8N114 240 aa10.66□□□□□ -0.7
SS18-214ENST00000580003 SUPT16HQ9Y5B9 1047 aaKnown RBP10.66□□□□□ -0.7
SS18-214ENST00000580003 FAM221AA4D161 298 aa10.65□□□□□ -0.7
SS18-214ENST00000580003 TGFB1P01137 390 aa10.65□□□□□ -0.7
SS18-214ENST00000580003 GRK4P32298 578 aa10.65□□□□□ -0.7
SS18-214ENST00000580003 CYP27C1Q4G0S4 372 aa10.65□□□□□ -0.7
SS18-214ENST00000580003 OGFOD3Q6PK18 319 aa10.65□□□□□ -0.7
SS18-214ENST00000580003 HID1Q8IV36 788 aa10.65□□□□□ -0.7
SS18-214ENST00000580003 PIM2Q9P1W9 311 aa10.65□□□□□ -0.7
SS18-214ENST00000580003 SCO2A0A1W2PP80 73 aa10.64□□□□□ -0.71
SS18-214ENST00000580003 PRR19A6NJB7 356 aa10.64□□□□□ -0.71
SS18-214ENST00000580003 FAM87AP0C7U9 286 aa10.64□□□□□ -0.71
SS18-214ENST00000580003 FBXL19Q6PCT2 694 aa10.64□□□□□ -0.71
SS18-214ENST00000580003 UBE3DQ7Z6J8 389 aa10.64□□□□□ -0.71
SS18-214ENST00000580003 USP48Q86UV5 1035 aa10.64□□□□□ -0.71
SS18-214ENST00000580003 COBLO75128 1261 aa10.63□□□□□ -0.71
SS18-214ENST00000580003 PGRP06401 933 aa10.63□□□□□ -0.71
SS18-214ENST00000580003 GARTP22102 1010 aa10.63□□□□□ -0.71
SS18-214ENST00000580003 MPP2Q14168 576 aa10.63□□□□□ -0.71
SS18-214ENST00000580003 FAM196AQ6ZSG2 479 aa10.63□□□□□ -0.71
SS18-214ENST00000580003 ZNF765Q7L2R6 523 aa10.63□□□□□ -0.71
SS18-214ENST00000580003 ZNF296Q8WUU4 475 aaPredicted RBP10.63□□□□□ -0.71
SS18-214ENST00000580003 ROBO2Q9HCK4 1378 aa10.63□□□□□ -0.71
SS18-214ENST00000580003 INTS5Q6P9B9 1019 aaKnown RBP10.62□□□□□ -0.71
SS18-214ENST00000580003 TOP6BLQ8N6T0 577 aa10.62□□□□□ -0.71
SS18-214ENST00000580003 KCNQ5Q9NR82 932 aa10.62□□□□□ -0.71
SS18-214ENST00000580003 ADAMTS1Q9UHI8 967 aa10.62□□□□□ -0.71
SS18-214ENST00000580003 TLR3O15455 904 aaKnown RBP10.61□□□□□ -0.71
SS18-214ENST00000580003 LRIG2O94898 1065 aa10.61□□□□□ -0.71
SS18-214ENST00000580003 CWF19L2Q2TBE0 894 aaKnown RBP10.61□□□□□ -0.71
SS18-214ENST00000580003 ARMCX6Q7L4S7 300 aa10.61□□□□□ -0.71
SS18-214ENST00000580003 PSMG3-AS1Q96PY0 264 aa10.61□□□□□ -0.71
SS18-214ENST00000580003 FOXQ1Q9C009 403 aa10.61□□□□□ -0.71
SS18-214ENST00000580003 FBRSQ9HAH7 460 aa10.61□□□□□ -0.71
SS18-214ENST00000580003 PRDM10Q9NQV6 1147 aa10.61□□□□□ -0.71
SS18-214ENST00000580003 CYP26A1O43174 497 aa10.6□□□□□ -0.71
SS18-214ENST00000580003 GREM1O60565 184 aa10.6□□□□□ -0.71
SS18-214ENST00000580003 SSTR4P31391 388 aa10.6□□□□□ -0.71
SS18-214ENST00000580003 RBM25P49756 843 aaKnown RBP10.6□□□□□ -0.71
SS18-214ENST00000580003 KIAA0825Q8IV33 1275 aa10.6□□□□□ -0.71
SS18-214ENST00000580003 FBXO27Q8NI29 283 aa10.6□□□□□ -0.71
SS18-214ENST00000580003 SPON2Q9BUD6 331 aa10.6□□□□□ -0.71
SS18-214ENST00000580003 DUSP23Q9BVJ7 150 aa10.6□□□□□ -0.71
SS18-214ENST00000580003 LRRC4CQ9HCJ2 640 aa10.6□□□□□ -0.71
SS18-214ENST00000580003 ADAM30Q9UKF2 790 aa10.6□□□□□ -0.71
SS18-214ENST00000580003 LEFTY1O75610 366 aa10.59□□□□□ -0.71
SS18-214ENST00000580003 FOSL1P15407 271 aa10.59□□□□□ -0.71
SS18-214ENST00000580003 PLCG1P19174 1290 aa10.59□□□□□ -0.71
SS18-214ENST00000580003 CAP2P40123 477 aa10.59□□□□□ -0.71
SS18-214ENST00000580003 SLBPQ14493 270 aaKnown RBP eCLIP10.59□□□□□ -0.71
SS18-214ENST00000580003 NKG7Q16617 165 aa10.59□□□□□ -0.71
SS18-214ENST00000580003 ZNF394Q53GI3 561 aa10.59□□□□□ -0.71
SS18-214ENST00000580003 REC114Q7Z4M0 266 aa10.59□□□□□ -0.71
SS18-214ENST00000580003 ZNF428Q96B54 188 aa10.59□□□□□ -0.71
SS18-214ENST00000580003 LRP8Q14114 963 aa10.58□□□□□ -0.72
SS18-214ENST00000580003 MFSD2AQ8NA29 543 aa10.58□□□□□ -0.72
SS18-214ENST00000580003 LRRC3Q9BY71 257 aa10.58□□□□□ -0.72
SS18-214ENST00000580003 PCDHGB7Q9Y5F8 929 aa10.58□□□□□ -0.72
SS18-214ENST00000580003 CORINQ9Y5Q5 1042 aa10.58□□□□□ -0.72
SS18-214ENST00000580003 GRIN3BO60391 1043 aa10.57□□□□□ -0.72
SS18-214ENST00000580003 CST3P01034 146 aaPredicted RBP10.57□□□□□ -0.72
SS18-214ENST00000580003 APOBRQ0VD83 1088 aa10.57□□□□□ -0.72
SS18-214ENST00000580003 SLC6A19Q695T7 634 aa10.57□□□□□ -0.72
SS18-214ENST00000580003 TMEM87BQ96K49 555 aa10.57□□□□□ -0.72
SS18-214ENST00000580003 PCMTD2Q9NV79 361 aa10.57□□□□□ -0.72
SS18-214ENST00000580003 TJP2Q9UDY2 1190 aa10.57□□□□□ -0.72
SS18-214ENST00000580003 HDLBPQ00341 1268 aaKnown RBP10.56□□□□□ -0.72
SS18-214ENST00000580003 PRAMEF13Q5VWM6 474 aa10.56□□□□□ -0.72
SS18-214ENST00000580003 ARHGAP27Q6ZUM4 889 aa10.56□□□□□ -0.72
SS18-214ENST00000580003 MRPL41Q8IXM3 137 aaKnown RBP10.56□□□□□ -0.72
SS18-214ENST00000580003 ZNF654Q8IZM8 581 aa10.56□□□□□ -0.72
SS18-214ENST00000580003 NT5C1AQ9BXI3 368 aa10.56□□□□□ -0.72
SS18-214ENST00000580003 UBP1Q9NZI7 540 aa10.56□□□□□ -0.72
SS18-214ENST00000580003 DDX41Q9UJV9 622 aaKnown RBP10.56□□□□□ -0.72
SS18-214ENST00000580003 POLR3KQ9Y2Y1 108 aaPredicted RBP10.56□□□□□ -0.72
SS18-214ENST00000580003 HOXA10P31260 410 aaPredicted RBP10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 99.3 ms