RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 GTF2A2P52657 109 aa23.53■■□□□ 1.36
SS18-209ENST00000578595 INHBEP58166 350 aa23.53■■□□□ 1.36
SS18-209ENST00000578595 CCL15Q16663 113 aa23.53■■□□□ 1.36
SS18-209ENST00000578595 OTUD7BQ6GQQ9 843 aa23.53■■□□□ 1.36
SS18-209ENST00000578595 ARMT1Q9H993 441 aa23.53■■□□□ 1.36
SS18-209ENST00000578595 PI4KBQ9UBF8 816 aa23.53■■□□□ 1.36
SS18-209ENST00000578595 PHIPQ8WWQ0 1821 aa23.53■■□□□ 1.36
SS18-209ENST00000578595 TCRBV5S4A2TA0A5A2 114 aa23.52■■□□□ 1.36
SS18-209ENST00000578595 IGHDP01880 384 aa23.52■■□□□ 1.36
SS18-209ENST00000578595 PPIL2Q13356 520 aa23.52■■□□□ 1.36
SS18-209ENST00000578595 IFNL1Q8IU54 200 aa23.52■■□□□ 1.36
SS18-209ENST00000578595 SCYL3Q8IZE3 742 aa23.52■■□□□ 1.36
SS18-209ENST00000578595 LCORLQ8N3X6 602 aa23.52■■□□□ 1.36
SS18-209ENST00000578595 RIOK1Q9BRS2 568 aaKnown RBP23.52■■□□□ 1.36
SS18-209ENST00000578595 IRF6O14896 467 aa23.51■■□□□ 1.35
SS18-209ENST00000578595 ALDH1A1P00352 501 aa23.51■■□□□ 1.35
SS18-209ENST00000578595 CHGBP05060 677 aa23.51■■□□□ 1.35
SS18-209ENST00000578595 PPATQ06203 517 aa23.51■■□□□ 1.35
SS18-209ENST00000578595 SNAPC2Q13487 334 aa23.51■■□□□ 1.35
SS18-209ENST00000578595 NOL9Q5SY16 702 aaKnown RBP23.51■■□□□ 1.35
SS18-209ENST00000578595 TNS4Q8IZW8 715 aa23.51■■□□□ 1.35
SS18-209ENST00000578595 KBTBD3Q8NAB2 608 aa23.51■■□□□ 1.35
SS18-209ENST00000578595 FSD1Q9BTV5 496 aa23.51■■□□□ 1.35
SS18-209ENST00000578595 HERC5Q9UII4 1024 aaKnown RBP23.51■■□□□ 1.35
SS18-209ENST00000578595 PHF20L1A8MW92 1017 aa23.5■■□□□ 1.35
SS18-209ENST00000578595 POLR3DP05423 398 aaPredicted RBP23.5■■□□□ 1.35
SS18-209ENST00000578595 SMC5Q8IY18 1101 aa23.5■■□□□ 1.35
SS18-209ENST00000578595 PI4K2BQ8TCG2 481 aa23.5■■□□□ 1.35
SS18-209ENST00000578595 SDR42E1Q8WUS8 393 aa23.5■■□□□ 1.35
SS18-209ENST00000578595 IGF2BP3O00425 579 aaKnown RBP eCLIP23.49■■□□□ 1.35
SS18-209ENST00000578595 TBC1D12O60347 775 aa23.49■■□□□ 1.35
SS18-209ENST00000578595 CTNND1O60716 968 aaKnown RBP23.49■■□□□ 1.35
SS18-209ENST00000578595 CETPP11597 493 aa23.49■■□□□ 1.35
SS18-209ENST00000578595 UBE3CQ15386 1083 aa23.49■■□□□ 1.35
SS18-209ENST00000578595 LRRFIP1Q32MZ4 808 aaKnown RBP23.49■■□□□ 1.35
SS18-209ENST00000578595 BRI3BPQ8WY22 251 aa23.48■■□□□ 1.35
SS18-209ENST00000578595 DDRGK1Q96HY6 314 aa23.48■■□□□ 1.35
SS18-209ENST00000578595 MCM9Q9NXL9 1143 aa23.48■■□□□ 1.35
SS18-209ENST00000578595 FRMD4AQ9P2Q2 1039 aaPredicted RBP23.48■■□□□ 1.35
SS18-209ENST00000578595 ZHX2Q9Y6X8 837 aa23.48■■□□□ 1.35
SS18-209ENST00000578595 MAP3K10Q02779 954 aa23.47■■□□□ 1.35
SS18-209ENST00000578595 TTC6Q86TZ1 520 aa23.47■■□□□ 1.35
SS18-209ENST00000578595 CCDC84Q86UT8 332 aaPredicted RBP23.47■■□□□ 1.35
SS18-209ENST00000578595 CHD1LQ86WJ1 897 aa23.47■■□□□ 1.35
SS18-209ENST00000578595 MS4A4AQ96JQ5 239 aa23.47■■□□□ 1.35
SS18-209ENST00000578595 PTPRAP18433 802 aa23.46■■□□□ 1.35
SS18-209ENST00000578595 PDE1AP54750 535 aa23.46■■□□□ 1.35
SS18-209ENST00000578595 TAF1CQ15572 869 aaPredicted RBP23.46■■□□□ 1.35
SS18-209ENST00000578595 FOXP4Q8IVH2 680 aaPredicted RBP23.46■■□□□ 1.35
SS18-209ENST00000578595 SALL3Q9BXA9 1300 aa23.46■■□□□ 1.35
SS18-209ENST00000578595 SLC4A4Q9Y6R1 1079 aa23.46■■□□□ 1.35
SS18-209ENST00000578595 RNF113AO15541 343 aaKnown RBP23.45■■□□□ 1.34
SS18-209ENST00000578595 PRKAB2O43741 272 aa23.45■■□□□ 1.34
SS18-209ENST00000578595 GDF11O95390 407 aa23.45■■□□□ 1.34
SS18-209ENST00000578595 ZFYP08048 801 aaPredicted RBP23.45■■□□□ 1.34
SS18-209ENST00000578595 AMOTL1Q8IY63 956 aa23.45■■□□□ 1.34
SS18-209ENST00000578595 PTPN18Q99952 460 aa23.45■■□□□ 1.34
SS18-209ENST00000578595 PUS7LQ9H0K6 701 aaKnown RBP23.45■■□□□ 1.34
SS18-209ENST00000578595 SERPINB13Q9UIV8 391 aa23.45■■□□□ 1.34
SS18-209ENST00000578595 TESPA1A2RU30 521 aaPredicted RBP23.44■■□□□ 1.34
SS18-209ENST00000578595 TRIM75PA6NK02 468 aa23.44■■□□□ 1.34
SS18-209ENST00000578595 NUCB1Q02818 461 aa23.44■■□□□ 1.34
SS18-209ENST00000578595 APPBP2Q92624 585 aa23.44■■□□□ 1.34
SS18-209ENST00000578595 DCP1AQ9NPI6 582 aaPredicted RBP23.44■■□□□ 1.34
SS18-209ENST00000578595 TRIM6-TRIM34B2RNG4 842 aa23.43■■□□□ 1.34
SS18-209ENST00000578595 CAP2P40123 477 aa23.43■■□□□ 1.34
SS18-209ENST00000578595 CRHR2Q13324 411 aa23.43■■□□□ 1.34
SS18-209ENST00000578595 GADL1Q6ZQY3 521 aa23.43■■□□□ 1.34
SS18-209ENST00000578595 FAM43AQ8N2R8 423 aa23.43■■□□□ 1.34
SS18-209ENST00000578595 DNAJC18Q9H819 358 aa23.43■■□□□ 1.34
SS18-209ENST00000578595 KCNH4Q9UQ05 1017 aa23.43■■□□□ 1.34
SS18-209ENST00000578595 R3HDMLQ9H3Y0 253 aa23.42■■□□□ 1.34
SS18-209ENST00000578595 STAP2Q9UGK3 403 aa23.42■■□□□ 1.34
SS18-209ENST00000578595 BTBD19C9JJ37 291 aa23.41■■□□□ 1.34
SS18-209ENST00000578595 GPR25O00155 361 aa23.41■■□□□ 1.34
SS18-209ENST00000578595 CXCL11O14625 94 aa23.41■■□□□ 1.34
SS18-209ENST00000578595 ASNSP08243 561 aa23.41■■□□□ 1.34
SS18-209ENST00000578595 CYP2D6P10635 497 aa23.41■■□□□ 1.34
SS18-209ENST00000578595 PLCD1P51178 756 aa23.41■■□□□ 1.34
SS18-209ENST00000578595 RRP1BQ14684 758 aaKnown RBP23.41■■□□□ 1.34
SS18-209ENST00000578595 ZNF296Q8WUU4 475 aaPredicted RBP23.41■■□□□ 1.34
SS18-209ENST00000578595 OSBP2Q969R2 916 aa23.41■■□□□ 1.34
SS18-209ENST00000578595 RILPL2Q969X0 211 aa23.41■■□□□ 1.34
SS18-209ENST00000578595 EHD4Q9H223 541 aa23.41■■□□□ 1.34
SS18-209ENST00000578595 ZFYVE28Q9HCC9 887 aa23.41■■□□□ 1.34
SS18-209ENST00000578595 ATP8A2Q9NTI2 1148 aa23.41■■□□□ 1.34
SS18-209ENST00000578595 LOC285556D6RIA3 1793 aa23.4■■□□□ 1.34
SS18-209ENST00000578595 USP17L5A8MUK1 530 aa23.4■■□□□ 1.34
SS18-209ENST00000578595 FKTNO75072 461 aa23.4■■□□□ 1.34
SS18-209ENST00000578595 APPP05067 770 aa23.4■■□□□ 1.34
SS18-209ENST00000578595 EVI5LQ96CN4 794 aa23.4■■□□□ 1.34
SS18-209ENST00000578595 AS3MTQ9HBK9 375 aa23.4■■□□□ 1.34
SS18-209ENST00000578595 AFG3L2Q9Y4W6 797 aa23.4■■□□□ 1.34
SS18-209ENST00000578595 M0R2C6 588 aa23.39■■□□□ 1.33
SS18-209ENST00000578595 GPAA1O43292 621 aa23.39■■□□□ 1.33
SS18-209ENST00000578595 DGKZQ13574 1117 aa23.39■■□□□ 1.33
SS18-209ENST00000578595 ZBTB21Q9ULJ3 1066 aa23.39■■□□□ 1.33
SS18-209ENST00000578595 MPHOSPH10O00566 681 aaKnown RBP23.38■■□□□ 1.33
SS18-209ENST00000578595 SPP2Q13103 211 aa23.38■■□□□ 1.33
SS18-209ENST00000578595 SHROOM1Q2M3G4 852 aaPredicted RBP23.38■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms