RNA–Protein interactions for RNA: ENST00000575338.1

SMG6-217, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 4

Gene SMG6, Length 546 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-217ENST00000575338 PRKAB2O43741 272 aa7.88□□□□□ -1.15
SMG6-217ENST00000575338 RANBP6O60518 1105 aaKnown RBP7.88□□□□□ -1.15
SMG6-217ENST00000575338 PPP6R2O75170 966 aa7.88□□□□□ -1.15
SMG6-217ENST00000575338 UFL1O94874 794 aa7.88□□□□□ -1.15
SMG6-217ENST00000575338 BMP15O95972 392 aa7.88□□□□□ -1.15
SMG6-217ENST00000575338 FDPSP14324 419 aaKnown RBP7.88□□□□□ -1.15
SMG6-217ENST00000575338 IL1R1P14778 569 aa7.88□□□□□ -1.15
SMG6-217ENST00000575338 NPR1P16066 1061 aa7.88□□□□□ -1.15
SMG6-217ENST00000575338 ME1P48163 572 aa7.88□□□□□ -1.15
SMG6-217ENST00000575338 GNAQP50148 359 aa7.88□□□□□ -1.15
SMG6-217ENST00000575338 FAM160A1Q05DH4 1040 aa7.88□□□□□ -1.15
SMG6-217ENST00000575338 COL9A3Q14050 684 aaPredicted RBP7.88□□□□□ -1.15
SMG6-217ENST00000575338 MYSM1Q5VVJ2 828 aa7.88□□□□□ -1.15
SMG6-217ENST00000575338 RBM43Q6ZSC3 357 aaKnown RBP7.88□□□□□ -1.15
SMG6-217ENST00000575338 SP8Q8IXZ3 490 aa7.88□□□□□ -1.15
SMG6-217ENST00000575338 FANCBQ8NB91 859 aa7.88□□□□□ -1.15
SMG6-217ENST00000575338 CTCFLQ8NI51 663 aaPredicted RBP7.88□□□□□ -1.15
SMG6-217ENST00000575338 SDR42E1Q8WUS8 393 aa7.88□□□□□ -1.15
SMG6-217ENST00000575338 MRPS27Q92552 414 aaKnown RBP7.88□□□□□ -1.15
SMG6-217ENST00000575338 PDLIM2Q96JY6 352 aa7.88□□□□□ -1.15
SMG6-217ENST00000575338 ZSCAN10Q96SZ4 725 aaPredicted RBP7.88□□□□□ -1.15
SMG6-217ENST00000575338 EYA3Q99504 573 aa7.88□□□□□ -1.15
SMG6-217ENST00000575338 PANK2Q9BZ23 570 aa7.88□□□□□ -1.15
SMG6-217ENST00000575338 NAT10Q9H0A0 1025 aaKnown RBP7.88□□□□□ -1.15
SMG6-217ENST00000575338 FOXP1Q9H334 677 aaPredicted RBP7.88□□□□□ -1.15
SMG6-217ENST00000575338 TFIP11Q9UBB9 837 aaKnown RBP7.88□□□□□ -1.15
SMG6-217ENST00000575338 HOOK1Q9UJC3 728 aaKnown RBP7.88□□□□□ -1.15
SMG6-217ENST00000575338 TAOK2Q9UL54 1235 aa7.88□□□□□ -1.15
SMG6-217ENST00000575338 PARP3Q9Y6F1 533 aa7.88□□□□□ -1.15
SMG6-217ENST00000575338 ROBO3Q96MS0 1386 aa7.87□□□□□ -1.15
SMG6-217ENST00000575338 MROH7-TTC4A0A0A0MT08 1334 aa7.87□□□□□ -1.15
SMG6-217ENST00000575338 TSPY2A6NKD2 308 aa7.87□□□□□ -1.15
SMG6-217ENST00000575338 POLRMTO00411 1230 aaKnown RBP7.87□□□□□ -1.15
SMG6-217ENST00000575338 PPEF1O14829 653 aaPredicted RBP7.87□□□□□ -1.15
SMG6-217ENST00000575338 SPTLC2O15270 562 aa7.87□□□□□ -1.15
SMG6-217ENST00000575338 U2AF2P26368 475 aaKnown RBP eCLIP7.87□□□□□ -1.152e-6■■□□□ 13.9
SMG6-217ENST00000575338 KIF23Q02241 960 aaPredicted RBP7.87□□□□□ -1.15
SMG6-217ENST00000575338 RILPL1Q5EBL4 403 aa7.87□□□□□ -1.15
SMG6-217ENST00000575338 PPP4R3BQ5MIZ7 849 aa7.87□□□□□ -1.15
SMG6-217ENST00000575338 ANO1Q5XXA6 986 aa7.87□□□□□ -1.15
SMG6-217ENST00000575338 KRT40Q6A162 431 aa7.87□□□□□ -1.15
SMG6-217ENST00000575338 CTR9Q6PD62 1173 aa7.87□□□□□ -1.15
SMG6-217ENST00000575338 CCAR1Q8IX12 1150 aaKnown RBP7.87□□□□□ -1.15
SMG6-217ENST00000575338 FAM200AQ8TCP9 573 aa7.87□□□□□ -1.15
SMG6-217ENST00000575338 CHAMP1Q96JM3 812 aa7.87□□□□□ -1.15
SMG6-217ENST00000575338 USP28Q96RU2 1077 aa7.87□□□□□ -1.15
SMG6-217ENST00000575338 SLC26A6Q9BXS9 759 aa7.87□□□□□ -1.15
SMG6-217ENST00000575338 COA1Q9GZY4 146 aa7.87□□□□□ -1.15
SMG6-217ENST00000575338 CD209Q9NNX6 404 aa7.87□□□□□ -1.15
SMG6-217ENST00000575338 DCP1AQ9NPI6 582 aaPredicted RBP7.87□□□□□ -1.15
SMG6-217ENST00000575338 AATFQ9NY61 560 aaKnown RBP eCLIP7.87□□□□□ -1.15
SMG6-217ENST00000575338 DACT1Q9NYF0 836 aa7.87□□□□□ -1.15
SMG6-217ENST00000575338 DDX60LQ5H9U9 1706 aaKnown RBP7.86□□□□□ -1.15
SMG6-217ENST00000575338 FAM205AQ6ZU69 1335 aa7.86□□□□□ -1.15
SMG6-217ENST00000575338 USP17L12C9JPN9 530 aa7.86□□□□□ -1.15
SMG6-217ENST00000575338 USP17L21D6R901 530 aa7.86□□□□□ -1.15
SMG6-217ENST00000575338 G3V3G9 751 aa7.86□□□□□ -1.15
SMG6-217ENST00000575338 APBA3O96018 575 aa7.86□□□□□ -1.15
SMG6-217ENST00000575338 MMP1P03956 469 aa7.86□□□□□ -1.15
SMG6-217ENST00000575338 PTMAP06454 111 aaKnown RBP7.86□□□□□ -1.15
SMG6-217ENST00000575338 RXRBP28702 533 aa7.86□□□□□ -1.15
SMG6-217ENST00000575338 PRDX5P30044 214 aa7.86□□□□□ -1.15
SMG6-217ENST00000575338 ADD1P35611 737 aaKnown RBP7.86□□□□□ -1.15
SMG6-217ENST00000575338 DYNLL1P63167 89 aaKnown RBP7.86□□□□□ -1.15
SMG6-217ENST00000575338 TPM4P67936 248 aa7.86□□□□□ -1.15
SMG6-217ENST00000575338 GUCY1B3Q02153 619 aa7.86□□□□□ -1.15
SMG6-217ENST00000575338 DHX8Q14562 1220 aaKnown RBP7.86□□□□□ -1.15
SMG6-217ENST00000575338 SEC23AQ15436 765 aa7.86□□□□□ -1.15
SMG6-217ENST00000575338 NTRK3Q16288 839 aa7.86□□□□□ -1.15
SMG6-217ENST00000575338 STX1AQ16623 288 aa7.86□□□□□ -1.15
SMG6-217ENST00000575338 GRIPAP1Q4V328 841 aa7.86□□□□□ -1.15
SMG6-217ENST00000575338 DCAF8Q5TAQ9 597 aa7.86□□□□□ -1.15
SMG6-217ENST00000575338 FAM173BQ6P4H8 233 aa7.86□□□□□ -1.15
SMG6-217ENST00000575338 ADGRA1Q86SQ6 560 aa7.86□□□□□ -1.15
SMG6-217ENST00000575338 DGKHQ86XP1 1220 aa7.86□□□□□ -1.15
SMG6-217ENST00000575338 ZNF444Q8N0Y2 327 aaPredicted RBP7.86□□□□□ -1.15
SMG6-217ENST00000575338 LINC00301Q8NCQ3 95 aa7.86□□□□□ -1.15
SMG6-217ENST00000575338 NUP133Q8WUM0 1156 aa7.86□□□□□ -1.15
SMG6-217ENST00000575338 FAM163AQ96GL9 167 aaPredicted RBP7.86□□□□□ -1.15
SMG6-217ENST00000575338 TIGD1Q96MW7 591 aa7.86□□□□□ -1.15
SMG6-217ENST00000575338 LZTS2Q9BRK4 669 aa7.86□□□□□ -1.15
SMG6-217ENST00000575338 FUCA2Q9BTY2 467 aa7.86□□□□□ -1.15
SMG6-217ENST00000575338 MKNK2Q9HBH9 465 aa7.86□□□□□ -1.15
SMG6-217ENST00000575338 ANO10Q9NW15 660 aa7.86□□□□□ -1.15
SMG6-217ENST00000575338 MCM9Q9NXL9 1143 aa7.86□□□□□ -1.15
SMG6-217ENST00000575338 NOL7Q9UMY1 257 aaKnown RBP7.86□□□□□ -1.15
SMG6-217ENST00000575338 DDX52Q9Y2R4 599 aaKnown RBP eCLIP7.86□□□□□ -1.15
SMG6-217ENST00000575338 ATP6V0A2Q9Y487 856 aa7.86□□□□□ -1.15
SMG6-217ENST00000575338 MORC2Q9Y6X9 1032 aaPredicted RBP7.86□□□□□ -1.15
SMG6-217ENST00000575338 ESPNB1AK53 854 aa7.85□□□□□ -1.15
SMG6-217ENST00000575338 GOLGA6L19H0YKK7 550 aa7.85□□□□□ -1.15
SMG6-217ENST00000575338 C6orf229H3BNL8 230 aa7.85□□□□□ -1.15
SMG6-217ENST00000575338 PRPF3O43395 683 aaKnown RBP7.85□□□□□ -1.15
SMG6-217ENST00000575338 CUTAO60888 179 aa7.85□□□□□ -1.15
SMG6-217ENST00000575338 POLR3DP05423 398 aaPredicted RBP7.85□□□□□ -1.15
SMG6-217ENST00000575338 LIG1P18858 919 aa7.85□□□□□ -1.15
SMG6-217ENST00000575338 CMA1P23946 247 aa7.85□□□□□ -1.15
SMG6-217ENST00000575338 CDC27P30260 824 aa7.85□□□□□ -1.15
SMG6-217ENST00000575338 FOSBP53539 338 aa7.85□□□□□ -1.15
SMG6-217ENST00000575338 GPSM2P81274 684 aa7.85□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms