RNA–Protein interactions for RNA: ENST00000569036.2

CDH3-208, Transcript of cadherin 3, humanhuman

TSL 4

Gene CDH3, Length 563 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-208ENST00000569036 PROCA1Q8NCQ7 364 aaPredicted RBP14.31□□□□□ -0.12
CDH3-208ENST00000569036 USP6NLQ92738 828 aa14.31□□□□□ -0.12
CDH3-208ENST00000569036 SPINK5Q9NQ38 1064 aaPredicted RBP14.31□□□□□ -0.12
CDH3-208ENST00000569036 MORF4L1Q9UBU8 362 aa14.31□□□□□ -0.12
CDH3-208ENST00000569036 FAM198AQ9UFP1 575 aa14.31□□□□□ -0.12
CDH3-208ENST00000569036 FAM86C2PA6NEL3 165 aa14.3□□□□□ -0.12
CDH3-208ENST00000569036 GPR37L1O60883 481 aa14.3□□□□□ -0.12
CDH3-208ENST00000569036 TRIM60Q495X7 471 aa14.3□□□□□ -0.12
CDH3-208ENST00000569036 CDC42EP5Q6NZY7 148 aa14.3□□□□□ -0.12
CDH3-208ENST00000569036 LPAR1Q92633 364 aa14.3□□□□□ -0.12
CDH3-208ENST00000569036 ZNF594Q96JF6 807 aaPredicted RBP14.3□□□□□ -0.12
CDH3-208ENST00000569036 ASCC2Q9H1I8 757 aaPredicted RBP14.3□□□□□ -0.12
CDH3-208ENST00000569036 GTF3C3Q9Y5Q9 886 aa14.3□□□□□ -0.12
CDH3-208ENST00000569036 ITGB8P26012 769 aa14.29□□□□□ -0.12
CDH3-208ENST00000569036 KCNQ1P51787 676 aa14.29□□□□□ -0.12
CDH3-208ENST00000569036 TFF2Q03403 129 aa14.29□□□□□ -0.12
CDH3-208ENST00000569036 SLC39A5Q6ZMH5 540 aa14.29□□□□□ -0.12
CDH3-208ENST00000569036 LDHAL6AQ6ZMR3 332 aa14.29□□□□□ -0.12
CDH3-208ENST00000569036 ZFPM1Q8IX07 1006 aa14.29□□□□□ -0.12
CDH3-208ENST00000569036 APBA2Q99767 749 aa14.29□□□□□ -0.12
CDH3-208ENST00000569036 CNNM1Q9NRU3 951 aa14.29□□□□□ -0.12
CDH3-208ENST00000569036 DDX20Q9UHI6 824 aaKnown RBP14.29□□□□□ -0.12
CDH3-208ENST00000569036 CHMP3Q9Y3E7 222 aa14.29□□□□□ -0.12
CDH3-208ENST00000569036 PEX10O60683 326 aa14.28□□□□□ -0.12
CDH3-208ENST00000569036 RGS2P41220 211 aa14.28□□□□□ -0.12
CDH3-208ENST00000569036 FOXO4P98177 505 aa14.28□□□□□ -0.12
CDH3-208ENST00000569036 SNX17Q15036 470 aa14.28□□□□□ -0.12
CDH3-208ENST00000569036 FBXO33Q7Z6M2 555 aa14.28□□□□□ -0.12
CDH3-208ENST00000569036 SUGT1Q9Y2Z0 365 aa14.28□□□□□ -0.12
CDH3-208ENST00000569036 LRRFIP2Q9Y608 721 aaKnown RBP14.28□□□□□ -0.12
CDH3-208ENST00000569036 CTNND1O60716 968 aaKnown RBP14.27□□□□□ -0.13
CDH3-208ENST00000569036 FRAT2O75474 233 aaPredicted RBP14.27□□□□□ -0.13
CDH3-208ENST00000569036 SLURP2P0DP57 97 aa14.27□□□□□ -0.13
CDH3-208ENST00000569036 IGFBP4P22692 258 aa14.27□□□□□ -0.13
CDH3-208ENST00000569036 PABPC4Q13310 644 aaKnown RBP eCLIP14.27□□□□□ -0.13
CDH3-208ENST00000569036 MORN1Q5T089 497 aa14.27□□□□□ -0.13
CDH3-208ENST00000569036 CCDC30Q5VVM6 783 aa14.27□□□□□ -0.13
CDH3-208ENST00000569036 VPS37DQ86XT2 251 aa14.27□□□□□ -0.13
CDH3-208ENST00000569036 TRANK1O15050 2925 aa14.27□□□□□ -0.13
CDH3-208ENST00000569036 LRRC37A2A6NM11 1700 aa14.27□□□□□ -0.13
CDH3-208ENST00000569036 MYH13Q9UKX3 1938 aa14.26□□□□□ -0.13
CDH3-208ENST00000569036 MSCO60682 206 aa14.26□□□□□ -0.13
CDH3-208ENST00000569036 TAF7LQ5H9L4 462 aa14.26□□□□□ -0.13
CDH3-208ENST00000569036 GJC2Q5T442 439 aaPredicted RBP14.26□□□□□ -0.13
CDH3-208ENST00000569036 CCDC146Q8IYE0 955 aa14.26□□□□□ -0.13
CDH3-208ENST00000569036 KHSRPQ92945 711 aaKnown RBP eCLIP14.26□□□□□ -0.13
CDH3-208ENST00000569036 TSPYL2Q9H2G4 693 aaPredicted RBP14.26□□□□□ -0.13
CDH3-208ENST00000569036 TXNRD2Q9NNW7 524 aa14.26□□□□□ -0.13
CDH3-208ENST00000569036 ATAD5Q96QE3 1844 aa14.26□□□□□ -0.13
CDH3-208ENST00000569036 ZNF853P0CG23 659 aa14.25□□□□□ -0.13
CDH3-208ENST00000569036 MAPK4P31152 587 aa14.25□□□□□ -0.13
CDH3-208ENST00000569036 PBX2P40425 430 aa14.25□□□□□ -0.13
CDH3-208ENST00000569036 HMGCS2P54868 508 aa14.25□□□□□ -0.13
CDH3-208ENST00000569036 MAP3K10Q02779 954 aa14.25□□□□□ -0.13
CDH3-208ENST00000569036 AAK1Q2M2I8 961 aa14.25□□□□□ -0.13
CDH3-208ENST00000569036 C8orf58Q8NAV2 365 aa14.25□□□□□ -0.13
CDH3-208ENST00000569036 PBX4Q9BYU1 374 aa14.25□□□□□ -0.13
CDH3-208ENST00000569036 MYH16Q9H6N6 1097 aa14.25□□□□□ -0.13
CDH3-208ENST00000569036 FLRT1Q9NZU1 646 aa14.25□□□□□ -0.13
CDH3-208ENST00000569036 CFAP54Q96N23 3096 aa14.24□□□□□ -0.13
CDH3-208ENST00000569036 UTYO14607 1347 aa14.24□□□□□ -0.13
CDH3-208ENST00000569036 SMIM22K7EJ46 135 aa14.24□□□□□ -0.13
CDH3-208ENST00000569036 CNGA1P29973 690 aa14.24□□□□□ -0.13
CDH3-208ENST00000569036 NHLH1Q02575 133 aa14.24□□□□□ -0.13
CDH3-208ENST00000569036 FPGSQ05932 587 aa14.24□□□□□ -0.13
CDH3-208ENST00000569036 SPP2Q13103 211 aa14.24□□□□□ -0.13
CDH3-208ENST00000569036 DIXDC1Q155Q3 683 aa14.24□□□□□ -0.13
CDH3-208ENST00000569036 CCDC57Q2TAC2 916 aa14.24□□□□□ -0.13
CDH3-208ENST00000569036 LMBR1LQ6UX01 489 aa14.24□□□□□ -0.13
CDH3-208ENST00000569036 SH3BP5LQ7L8J4 393 aa14.24□□□□□ -0.13
CDH3-208ENST00000569036 GPR142Q7Z601 462 aa14.24□□□□□ -0.13
CDH3-208ENST00000569036 GPRC5AQ8NFJ5 357 aa14.24□□□□□ -0.13
CDH3-208ENST00000569036 PORCNQ9H237 461 aa14.24□□□□□ -0.13
CDH3-208ENST00000569036 KBTBD13C9JR72 458 aa14.23□□□□□ -0.13
CDH3-208ENST00000569036 RGS3P49796 1198 aa14.23□□□□□ -0.13
CDH3-208ENST00000569036 TLE2Q04725 743 aa14.23□□□□□ -0.13
CDH3-208ENST00000569036 MFSD14CQ5VZR4 134 aa14.23□□□□□ -0.13
CDH3-208ENST00000569036 USP40Q9NVE5 1235 aa14.23□□□□□ -0.13
CDH3-208ENST00000569036 USP34Q70CQ2 3546 aa14.23□□□□□ -0.13
CDH3-208ENST00000569036 GBF1Q92538 1859 aa14.23□□□□□ -0.13
CDH3-208ENST00000569036 RFX7Q2KHR2 1363 aa14.22□□□□□ -0.13
CDH3-208ENST00000569036 GRXCR1A8MXD5 290 aa14.22□□□□□ -0.13
CDH3-208ENST00000569036 IRX3P78415 501 aaPredicted RBP14.22□□□□□ -0.13
CDH3-208ENST00000569036 CAVIN4Q5BKX8 364 aa14.22□□□□□ -0.13
CDH3-208ENST00000569036 C1orf53Q5VUE5 145 aa14.22□□□□□ -0.13
CDH3-208ENST00000569036 CCDC129Q6ZRS4 1044 aa14.22□□□□□ -0.13
CDH3-208ENST00000569036 G2E3Q7L622 706 aa14.22□□□□□ -0.13
CDH3-208ENST00000569036 PLEKHH3Q7Z736 793 aa14.22□□□□□ -0.13
CDH3-208ENST00000569036 ARRDC4Q8NCT1 418 aa14.22□□□□□ -0.13
CDH3-208ENST00000569036 ZNF280CQ8ND82 737 aa14.22□□□□□ -0.13
CDH3-208ENST00000569036 TRPV1Q8NER1 839 aa14.22□□□□□ -0.13
CDH3-208ENST00000569036 PUS3Q9BZE2 481 aaKnown RBP14.22□□□□□ -0.13
CDH3-208ENST00000569036 TACC3Q9Y6A5 838 aa14.22□□□□□ -0.13
CDH3-208ENST00000569036 MYBBP1AQ9BQG0 1328 aaKnown RBP14.21□□□□□ -0.13
CDH3-208ENST00000569036 DDTLA6NHG4 134 aaPredicted RBP14.21□□□□□ -0.13
CDH3-208ENST00000569036 KIAA0355O15063 1070 aa14.21□□□□□ -0.13
CDH3-208ENST00000569036 CLTBP09497 229 aa14.21□□□□□ -0.13
CDH3-208ENST00000569036 RAG1P15918 1043 aa14.21□□□□□ -0.13
CDH3-208ENST00000569036 HERVK_113P62684 666 aa14.21□□□□□ -0.13
CDH3-208ENST00000569036 MAP2K5Q13163 448 aa14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms