RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 USP17L21D6R901 530 aa23.51■■□□□ 1.35
CLN3-230ENST00000568076 PRDM1O75626 825 aa23.51■■□□□ 1.35
CLN3-230ENST00000568076 WDHD1O75717 1129 aaPredicted RBP23.51■■□□□ 1.35
CLN3-230ENST00000568076 TRIM29Q14134 588 aa23.51■■□□□ 1.35
CLN3-230ENST00000568076 C11orf57Q6ZUT1 292 aaPredicted RBP23.51■■□□□ 1.35
CLN3-230ENST00000568076 NUP133Q8WUM0 1156 aa23.51■■□□□ 1.35
CLN3-230ENST00000568076 ZBTB22O15209 634 aa23.51■■□□□ 1.35
CLN3-230ENST00000568076 PRR5LQ6MZQ0 368 aa23.51■■□□□ 1.35
CLN3-230ENST00000568076 CCDC82Q8N4S0 544 aa23.51■■□□□ 1.35
CLN3-230ENST00000568076 CRACR2BQ8N4Y2 399 aaPredicted RBP23.51■■□□□ 1.35
CLN3-230ENST00000568076 ENAHQ8N8S7 591 aaPredicted RBP23.51■■□□□ 1.35
CLN3-230ENST00000568076 MAP3K14Q99558 947 aa23.51■■□□□ 1.35
CLN3-230ENST00000568076 DCP1AQ9NPI6 582 aaPredicted RBP23.51■■□□□ 1.35
CLN3-230ENST00000568076 ADRA2BP18089 450 aa23.5■■□□□ 1.35
CLN3-230ENST00000568076 PTPAQ15257 358 aa23.5■■□□□ 1.35
CLN3-230ENST00000568076 ERCC4Q92889 916 aaPredicted RBP23.5■■□□□ 1.35
CLN3-230ENST00000568076 ZSCAN10Q96SZ4 725 aaPredicted RBP23.5■■□□□ 1.35
CLN3-230ENST00000568076 ANKIB1Q9P2G1 1089 aa23.5■■□□□ 1.35
CLN3-230ENST00000568076 MAST2Q6P0Q8 1798 aa23.5■■□□□ 1.35
CLN3-230ENST00000568076 A0A087WWV3 80 aa23.49■■□□□ 1.35
CLN3-230ENST00000568076 MARCKSP29966 332 aaPredicted RBP23.49■■□□□ 1.35
CLN3-230ENST00000568076 GNL2Q13823 731 aaKnown RBP23.49■■□□□ 1.35
CLN3-230ENST00000568076 WASF1Q92558 559 aa23.49■■□□□ 1.35
CLN3-230ENST00000568076 MROH7-TTC4A0A0A0MT08 1334 aa23.49■■□□□ 1.35
CLN3-230ENST00000568076 MYH2Q9UKX2 1941 aa23.49■■□□□ 1.35
CLN3-230ENST00000568076 CCDC196A0A1B0GTZ2 297 aa23.49■■□□□ 1.35
CLN3-230ENST00000568076 CAVIN2O95810 425 aa23.49■■□□□ 1.35
CLN3-230ENST00000568076 IQCB1Q15051 598 aa23.49■■□□□ 1.35
CLN3-230ENST00000568076 STX1AQ16623 288 aa23.49■■□□□ 1.35
CLN3-230ENST00000568076 TRIM22Q8IYM9 498 aa23.49■■□□□ 1.35
CLN3-230ENST00000568076 DDX52Q9Y2R4 599 aaKnown RBP eCLIP23.49■■□□□ 1.35
CLN3-230ENST00000568076 EP400Q96L91 3159 aa23.48■■□□□ 1.35
CLN3-230ENST00000568076 UBR3Q6ZT12 1888 aa23.48■■□□□ 1.35
CLN3-230ENST00000568076 OFD1O75665 1012 aa23.48■■□□□ 1.35
CLN3-230ENST00000568076 MMP1P03956 469 aa23.48■■□□□ 1.35
CLN3-230ENST00000568076 GYS1P13807 737 aa23.48■■□□□ 1.35
CLN3-230ENST00000568076 CRNKL1Q9BZJ0 848 aaKnown RBP23.48■■□□□ 1.35
CLN3-230ENST00000568076 TTC12Q9H892 705 aaPredicted RBP23.48■■□□□ 1.35
CLN3-230ENST00000568076 KCNJ14Q9UNX9 436 aa23.48■■□□□ 1.35
CLN3-230ENST00000568076 LEMD3Q9Y2U8 911 aa23.48■■□□□ 1.35
CLN3-230ENST00000568076 CMA1P23946 247 aa23.47■■□□□ 1.35
CLN3-230ENST00000568076 BTBD18B2RXH4 712 aa23.47■■□□□ 1.35
CLN3-230ENST00000568076 DEXIO95424 95 aa23.47■■□□□ 1.35
CLN3-230ENST00000568076 PCP11498 1178 aaKnown RBP23.47■■□□□ 1.35
CLN3-230ENST00000568076 CERKQ8TCT0 537 aa23.47■■□□□ 1.35
CLN3-230ENST00000568076 ATP8A2Q9NTI2 1148 aa23.47■■□□□ 1.35
CLN3-230ENST00000568076 CYP2D6P10635 497 aa23.46■■□□□ 1.35
CLN3-230ENST00000568076 PFKFB1P16118 471 aa23.46■■□□□ 1.35
CLN3-230ENST00000568076 NOSTRINQ8IVI9 506 aa23.46■■□□□ 1.35
CLN3-230ENST00000568076 NAP1L5Q96NT1 182 aaPredicted RBP23.46■■□□□ 1.35
CLN3-230ENST00000568076 SDF4Q9BRK5 362 aa23.46■■□□□ 1.35
CLN3-230ENST00000568076 ZBTB4Q9P1Z0 1013 aaPredicted RBP23.46■■□□□ 1.35
CLN3-230ENST00000568076 XDHP47989 1333 aa23.46■■□□□ 1.35
CLN3-230ENST00000568076 PPP6R2O75170 966 aa23.45■■□□□ 1.35
CLN3-230ENST00000568076 ZNF202O95125 648 aa23.45■■□□□ 1.35
CLN3-230ENST00000568076 DIS3L2Q8IYB7 885 aaKnown RBP23.45■■□□□ 1.35
CLN3-230ENST00000568076 GPR101Q96P66 508 aaPredicted RBP23.45■■□□□ 1.35
CLN3-230ENST00000568076 CCDC88AQ3V6T2 1871 aa23.45■■□□□ 1.34
CLN3-230ENST00000568076 CRY2Q49AN0 593 aa23.45■■□□□ 1.34
CLN3-230ENST00000568076 IFIT1BQ5T764 474 aaKnown RBP23.45■■□□□ 1.34
CLN3-230ENST00000568076 TMED8Q6PL24 325 aaPredicted RBP23.45■■□□□ 1.34
CLN3-230ENST00000568076 DZIP1Q86YF9 867 aaKnown RBP23.45■■□□□ 1.34
CLN3-230ENST00000568076 SPC24Q8NBT2 197 aa23.45■■□□□ 1.34
CLN3-230ENST00000568076 SHISA4Q96DD7 197 aa23.45■■□□□ 1.34
CLN3-230ENST00000568076 LAMB1P07942 1786 aa23.45■■□□□ 1.34
CLN3-230ENST00000568076 KIAA1551Q9HCM1 1747 aa23.44■■□□□ 1.34
CLN3-230ENST00000568076 ORC4O43929 436 aa23.44■■□□□ 1.34
CLN3-230ENST00000568076 FUT2Q10981 343 aa23.44■■□□□ 1.34
CLN3-230ENST00000568076 GRIK5Q16478 980 aa23.44■■□□□ 1.34
CLN3-230ENST00000568076 SPTY2D1Q68D10 685 aaPredicted RBP23.44■■□□□ 1.34
CLN3-230ENST00000568076 IQCA1Q86XH1 822 aa23.44■■□□□ 1.34
CLN3-230ENST00000568076 PLA2G4DQ86XP0 818 aa23.44■■□□□ 1.34
CLN3-230ENST00000568076 DLEC1Q9Y238 1755 aa23.44■■□□□ 1.34
CLN3-230ENST00000568076 TOB1P50616 345 aaPredicted RBP23.43■■□□□ 1.34
CLN3-230ENST00000568076 TROAPQ12815 778 aa23.43■■□□□ 1.34
CLN3-230ENST00000568076 PPP2R5BQ15173 497 aa23.43■■□□□ 1.34
CLN3-230ENST00000568076 SBK1Q52WX2 424 aa23.43■■□□□ 1.34
CLN3-230ENST00000568076 SHC4Q6S5L8 630 aa23.43■■□□□ 1.34
CLN3-230ENST00000568076 QTRT2Q9H974 415 aaKnown RBP23.43■■□□□ 1.34
CLN3-230ENST00000568076 ANO10Q9NW15 660 aa23.43■■□□□ 1.34
CLN3-230ENST00000568076 HPSEQ9Y251 543 aa23.43■■□□□ 1.34
CLN3-230ENST00000568076 SERPINB2P05120 415 aa23.43■■□□□ 1.34
CLN3-230ENST00000568076 ZNF75DP51815 510 aa23.43■■□□□ 1.34
CLN3-230ENST00000568076 GPSM2P81274 684 aa23.43■■□□□ 1.34
CLN3-230ENST00000568076 WDR66Q8TBY9 1149 aa23.43■■□□□ 1.34
CLN3-230ENST00000568076 RNF26Q9BY78 433 aaPredicted RBP23.43■■□□□ 1.34
CLN3-230ENST00000568076 EIF4ENIF1Q9NRA8 985 aaKnown RBP23.43■■□□□ 1.34
CLN3-230ENST00000568076 KIAA1468Q9P260 1216 aa23.43■■□□□ 1.34
CLN3-230ENST00000568076 ARPP21Q9UBL0 812 aaPredicted RBP23.43■■□□□ 1.34
CLN3-230ENST00000568076 NMT2O60551 498 aa23.42■■□□□ 1.34
CLN3-230ENST00000568076 KIAA2012Q0VF49 1180 aa23.42■■□□□ 1.34
CLN3-230ENST00000568076 SAFBQ15424 915 aaKnown RBP eCLIP23.42■■□□□ 1.34
CLN3-230ENST00000568076 PKN1Q16512 942 aa23.42■■□□□ 1.34
CLN3-230ENST00000568076 PDZRN4Q6ZMN7 1036 aaPredicted RBP23.42■■□□□ 1.34
CLN3-230ENST00000568076 C15orf52Q6ZUT6 534 aaKnown RBP23.42■■□□□ 1.34
CLN3-230ENST00000568076 CATIPQ7Z7H3 387 aa23.42■■□□□ 1.34
CLN3-230ENST00000568076 DHX40Q8IX18 779 aaKnown RBP23.42■■□□□ 1.34
CLN3-230ENST00000568076 JMYQ8N9B5 988 aa23.42■■□□□ 1.34
CLN3-230ENST00000568076 RPGRQ92834 1020 aaKnown RBP23.42■■□□□ 1.34
CLN3-230ENST00000568076 CLIC6Q96NY7 704 aa23.42■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms