RNA–Protein interactions for RNA: ENST00000567379.5

VPS9D1-206, Transcript of VPS9 domain containing 1, humanhuman

TSL 5

Gene VPS9D1, Length 694 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-206ENST00000567379 PPIP5K2O43314 1243 aa12.72□□□□□ -0.37
VPS9D1-206ENST00000567379 RANBP6O60518 1105 aaKnown RBP12.72□□□□□ -0.37
VPS9D1-206ENST00000567379 CDKL5O76039 1030 aa12.72□□□□□ -0.37
VPS9D1-206ENST00000567379 POLR3DP05423 398 aaPredicted RBP12.72□□□□□ -0.37
VPS9D1-206ENST00000567379 USP17L8P0C7I0 530 aa12.72□□□□□ -0.37
VPS9D1-206ENST00000567379 YBX3P16989 372 aaKnown RBP eCLIP12.72□□□□□ -0.37
VPS9D1-206ENST00000567379 METAP2P50579 478 aaKnown RBP eCLIP12.72□□□□□ -0.37
VPS9D1-206ENST00000567379 C12orf60Q5U649 245 aa12.72□□□□□ -0.37
VPS9D1-206ENST00000567379 APOA5Q6Q788 366 aa12.72□□□□□ -0.37
VPS9D1-206ENST00000567379 HHIPL2Q6UWX4 724 aa12.72□□□□□ -0.37
VPS9D1-206ENST00000567379 USP17L1Q7RTZ2 530 aa12.72□□□□□ -0.37
VPS9D1-206ENST00000567379 IQCA1Q86XH1 822 aa12.72□□□□□ -0.37
VPS9D1-206ENST00000567379 CERS5Q8N5B7 392 aa12.72□□□□□ -0.37
VPS9D1-206ENST00000567379 DDX11Q96FC9 970 aa12.72□□□□□ -0.37
VPS9D1-206ENST00000567379 PSMD1Q99460 953 aa12.72□□□□□ -0.37
VPS9D1-206ENST00000567379 NCOA5Q9HCD5 579 aaKnown RBP12.72□□□□□ -0.37
VPS9D1-206ENST00000567379 MKRN1Q9UHC7 482 aaKnown RBP12.72□□□□□ -0.37
VPS9D1-206ENST00000567379 HPS5Q9UPZ3 1129 aa12.72□□□□□ -0.37
VPS9D1-206ENST00000567379 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.72□□□□□ -0.37
VPS9D1-206ENST00000567379 DAGLAQ9Y4D2 1042 aa12.72□□□□□ -0.37
VPS9D1-206ENST00000567379 SLC12A7Q9Y666 1083 aa12.72□□□□□ -0.37
VPS9D1-206ENST00000567379 SNED1Q8TER0 1413 aa12.71□□□□□ -0.37
VPS9D1-206ENST00000567379 GOLGA8AA7E2F4 631 aa12.71□□□□□ -0.37
VPS9D1-206ENST00000567379 F8W031 263 aaPredicted RBP12.71□□□□□ -0.37
VPS9D1-206ENST00000567379 H3BQV1 296 aa12.71□□□□□ -0.37
VPS9D1-206ENST00000567379 TRAK2O60296 914 aa12.71□□□□□ -0.37
VPS9D1-206ENST00000567379 CTDNEP1O95476 244 aa12.71□□□□□ -0.37
VPS9D1-206ENST00000567379 CYP2D6P10635 497 aa12.71□□□□□ -0.37
VPS9D1-206ENST00000567379 KCNA3P22001 575 aa12.71□□□□□ -0.37
VPS9D1-206ENST00000567379 RCAN1P53805 252 aa12.71□□□□□ -0.37
VPS9D1-206ENST00000567379 AOC3Q16853 763 aa12.71□□□□□ -0.37
VPS9D1-206ENST00000567379 MAPKAPK5Q8IW41 473 aa12.71□□□□□ -0.37
VPS9D1-206ENST00000567379 NLGN2Q8NFZ4 835 aa12.71□□□□□ -0.37
VPS9D1-206ENST00000567379 NKX2-3Q8TAU0 364 aa12.71□□□□□ -0.37
VPS9D1-206ENST00000567379 TEKT1Q969V4 418 aa12.71□□□□□ -0.37
VPS9D1-206ENST00000567379 MRIQ9BWK5 157 aa12.71□□□□□ -0.37
VPS9D1-206ENST00000567379 VPS33BQ9H267 617 aa12.71□□□□□ -0.37
VPS9D1-206ENST00000567379 ZNF287Q9HBT7 754 aa12.71□□□□□ -0.37
VPS9D1-206ENST00000567379 PIM2Q9P1W9 311 aa12.71□□□□□ -0.37
VPS9D1-206ENST00000567379 CDK5RAP2Q96SN8 1893 aa12.71□□□□□ -0.37
VPS9D1-206ENST00000567379 WDR90Q96KV7 1748 aa12.71□□□□□ -0.38
VPS9D1-206ENST00000567379 DTNBO60941 627 aa12.7□□□□□ -0.38
VPS9D1-206ENST00000567379 RHBDL3P58872 404 aa12.7□□□□□ -0.38
VPS9D1-206ENST00000567379 HDLBPQ00341 1268 aaKnown RBP12.7□□□□□ -0.38
VPS9D1-206ENST00000567379 DACT2Q5SW24 774 aa12.7□□□□□ -0.38
VPS9D1-206ENST00000567379 ZSCAN10Q96SZ4 725 aaPredicted RBP12.7□□□□□ -0.38
VPS9D1-206ENST00000567379 ZKSCAN3Q9BRR0 538 aa12.7□□□□□ -0.38
VPS9D1-206ENST00000567379 MXD3Q9BW11 206 aa12.7□□□□□ -0.38
VPS9D1-206ENST00000567379 ROBO3Q96MS0 1386 aa12.69□□□□□ -0.38
VPS9D1-206ENST00000567379 TNKSO95271 1327 aa12.69□□□□□ -0.38
VPS9D1-206ENST00000567379 MYH1P12882 1939 aa12.69□□□□□ -0.38
VPS9D1-206ENST00000567379 SMIM22K7EJ46 135 aa12.69□□□□□ -0.38
VPS9D1-206ENST00000567379 KIF3CO14782 793 aa12.69□□□□□ -0.38
VPS9D1-206ENST00000567379 PRDM1O75626 825 aa12.69□□□□□ -0.38
VPS9D1-206ENST00000567379 SCNN1DP51172 638 aa12.69□□□□□ -0.38
VPS9D1-206ENST00000567379 CSPP1Q1MSJ5 1256 aa12.69□□□□□ -0.38
VPS9D1-206ENST00000567379 CCDC178Q5BJE1 867 aa12.69□□□□□ -0.38
VPS9D1-206ENST00000567379 DALRD3Q5D0E6 543 aaKnown RBP12.69□□□□□ -0.38
VPS9D1-206ENST00000567379 MICU3Q86XE3 530 aa12.69□□□□□ -0.38
VPS9D1-206ENST00000567379 RAB11FIP4Q86YS3 637 aa12.69□□□□□ -0.38
VPS9D1-206ENST00000567379 MKNK2Q9HBH9 465 aa12.69□□□□□ -0.38
VPS9D1-206ENST00000567379 SENP2Q9HC62 589 aa12.69□□□□□ -0.38
VPS9D1-206ENST00000567379 USP40Q9NVE5 1235 aa12.69□□□□□ -0.38
VPS9D1-206ENST00000567379 ORC3Q9UBD5 711 aaPredicted RBP12.69□□□□□ -0.38
VPS9D1-206ENST00000567379 SAP30BPQ9UHR5 308 aaKnown RBP12.69□□□□□ -0.38
VPS9D1-206ENST00000567379 FOCADQ5VW36 1801 aa12.69□□□□□ -0.38
VPS9D1-206ENST00000567379 FLT1P17948 1338 aa12.68□□□□□ -0.38
VPS9D1-206ENST00000567379 CCDC196A0A1B0GTZ2 297 aa12.68□□□□□ -0.38
VPS9D1-206ENST00000567379 TSPY2A6NKD2 308 aa12.68□□□□□ -0.38
VPS9D1-206ENST00000567379 PRPF40AO75400 957 aaKnown RBP12.68□□□□□ -0.38
VPS9D1-206ENST00000567379 CRKP46108 304 aa12.68□□□□□ -0.38
VPS9D1-206ENST00000567379 PPP2R5BQ15173 497 aa12.68□□□□□ -0.38
VPS9D1-206ENST00000567379 SEC23AQ15436 765 aa12.68□□□□□ -0.38
VPS9D1-206ENST00000567379 RTN1Q16799 776 aa12.68□□□□□ -0.38
VPS9D1-206ENST00000567379 IFIT1BQ5T764 474 aaKnown RBP12.68□□□□□ -0.38
VPS9D1-206ENST00000567379 CDC37L1Q7L3B6 337 aa12.68□□□□□ -0.38
VPS9D1-206ENST00000567379 CATIPQ7Z7H3 387 aa12.68□□□□□ -0.38
VPS9D1-206ENST00000567379 ZNF654Q8IZM8 581 aa12.68□□□□□ -0.38
VPS9D1-206ENST00000567379 ZNF444Q8N0Y2 327 aaPredicted RBP12.68□□□□□ -0.38
VPS9D1-206ENST00000567379 LARGE2Q8N3Y3 721 aa12.68□□□□□ -0.38
VPS9D1-206ENST00000567379 JMYQ8N9B5 988 aa12.68□□□□□ -0.38
VPS9D1-206ENST00000567379 KCNQ5Q9NR82 932 aa12.68□□□□□ -0.38
VPS9D1-206ENST00000567379 LMBRD1Q9NUN5 540 aa12.68□□□□□ -0.38
VPS9D1-206ENST00000567379 CD2APQ9Y5K6 639 aa12.68□□□□□ -0.38
VPS9D1-206ENST00000567379 NID2Q14112 1375 aa12.68□□□□□ -0.38
VPS9D1-206ENST00000567379 SCN9AQ15858 1988 aa12.67□□□□□ -0.38
VPS9D1-206ENST00000567379 CALM1P0DP23 149 aa12.67□□□□□ -0.38
VPS9D1-206ENST00000567379 CALM2P0DP24 149 aa12.67□□□□□ -0.38
VPS9D1-206ENST00000567379 CALM3P0DP25 149 aa12.67□□□□□ -0.38
VPS9D1-206ENST00000567379 NCLP19338 710 aaKnown RBP12.67□□□□□ -0.38
VPS9D1-206ENST00000567379 FOXD4L6Q3SYB3 417 aaPredicted RBP12.67□□□□□ -0.38
VPS9D1-206ENST00000567379 FOXD4L3Q6VB84 417 aaPredicted RBP12.67□□□□□ -0.38
VPS9D1-206ENST00000567379 TTC6Q86TZ1 520 aa12.67□□□□□ -0.38
VPS9D1-206ENST00000567379 KIAA0825Q8IV33 1275 aa12.67□□□□□ -0.38
VPS9D1-206ENST00000567379 ENAHQ8N8S7 591 aaPredicted RBP12.67□□□□□ -0.38
VPS9D1-206ENST00000567379 RGS22Q8NE09 1264 aa12.67□□□□□ -0.38
VPS9D1-206ENST00000567379 ZDHHC15Q96MV8 337 aa12.67□□□□□ -0.38
VPS9D1-206ENST00000567379 ZSCAN16Q9H4T2 348 aaPredicted RBP12.67□□□□□ -0.38
VPS9D1-206ENST00000567379 DDX49Q9Y6V7 483 aaKnown RBP12.67□□□□□ -0.38
VPS9D1-206ENST00000567379 DDX60LQ5H9U9 1706 aaKnown RBP12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms