RNA–Protein interactions for RNA: ENST00000566703.1

RNF40-209, Transcript of ring finger protein 40, humanhuman

TSL 3

Gene RNF40, Length 808 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40-209ENST00000566703 CAPN2P17655 700 aa18.38■□□□□ 0.53
RNF40-209ENST00000566703 UBXN2AP68543 259 aa18.38■□□□□ 0.53
RNF40-209ENST00000566703 FOXP4Q8IVH2 680 aaPredicted RBP18.38■□□□□ 0.53
RNF40-209ENST00000566703 ZNF280CQ8ND82 737 aa18.38■□□□□ 0.53
RNF40-209ENST00000566703 SLAIN1Q8ND83 568 aa18.38■□□□□ 0.53
RNF40-209ENST00000566703 SMCR8Q8TEV9 937 aaPredicted RBP18.38■□□□□ 0.53
RNF40-209ENST00000566703 PNMA3Q9UL41 463 aa18.38■□□□□ 0.53
RNF40-209ENST00000566703 USP17L5A8MUK1 530 aa18.37■□□□□ 0.53
RNF40-209ENST00000566703 MYCP01106 439 aaPredicted RBP18.37■□□□□ 0.53
RNF40-209ENST00000566703 CYP2E1P05181 493 aaPredicted RBP18.37■□□□□ 0.53
RNF40-209ENST00000566703 PRKCZQ05513 592 aa18.37■□□□□ 0.53
RNF40-209ENST00000566703 SPP2Q13103 211 aa18.37■□□□□ 0.53
RNF40-209ENST00000566703 PABPC4Q13310 644 aaKnown RBP eCLIP18.37■□□□□ 0.53
RNF40-209ENST00000566703 MTFR1Q15390 333 aa18.37■□□□□ 0.53
RNF40-209ENST00000566703 PXYLP1Q8TE99 480 aa18.37■□□□□ 0.53
RNF40-209ENST00000566703 SH3RF3Q8TEJ3 882 aaPredicted RBP18.37■□□□□ 0.53
RNF40-209ENST00000566703 SNRKQ9NRH2 765 aa18.37■□□□□ 0.53
RNF40-209ENST00000566703 GINM1Q9NU53 330 aa18.37■□□□□ 0.53
RNF40-209ENST00000566703 FAM196BA6NMK8 535 aa18.36■□□□□ 0.53
RNF40-209ENST00000566703 GJA8P48165 433 aa18.36■□□□□ 0.53
RNF40-209ENST00000566703 GCLCP48506 637 aaPredicted RBP18.36■□□□□ 0.53
RNF40-209ENST00000566703 IRF5Q13568 498 aa18.36■□□□□ 0.53
RNF40-209ENST00000566703 SH3D19Q5HYK7 790 aa18.36■□□□□ 0.53
RNF40-209ENST00000566703 METTL16Q86W50 562 aaKnown RBP18.36■□□□□ 0.53
RNF40-209ENST00000566703 ITPRIPQ8IWB1 547 aa18.36■□□□□ 0.53
RNF40-209ENST00000566703 AS3MTQ9HBK9 375 aa18.36■□□□□ 0.53
RNF40-209ENST00000566703 AATFQ9NY61 560 aaKnown RBP eCLIP18.36■□□□□ 0.53
RNF40-209ENST00000566703 BIN2Q9UBW5 565 aaPredicted RBP18.36■□□□□ 0.53
RNF40-209ENST00000566703 CCL5P13501 91 aa18.35■□□□□ 0.53
RNF40-209ENST00000566703 ZAP70P43403 619 aa18.35■□□□□ 0.53
RNF40-209ENST00000566703 HABP4Q5JVS0 413 aaKnown RBP18.35■□□□□ 0.53
RNF40-209ENST00000566703 TMED8Q6PL24 325 aaPredicted RBP18.35■□□□□ 0.53
RNF40-209ENST00000566703 CCDC84Q86UT8 332 aaPredicted RBP18.35■□□□□ 0.53
RNF40-209ENST00000566703 CERS3Q8IU89 383 aa18.35■□□□□ 0.53
RNF40-209ENST00000566703 MIER1Q8N108 512 aa18.35■□□□□ 0.53
RNF40-209ENST00000566703 WDR18Q9BV38 432 aa18.35■□□□□ 0.53
RNF40-209ENST00000566703 GABRQQ9UN88 632 aa18.35■□□□□ 0.53
RNF40-209ENST00000566703 TNPO2O14787 897 aaKnown RBP18.34■□□□□ 0.53
RNF40-209ENST00000566703 ASNSP08243 561 aa18.34■□□□□ 0.53
RNF40-209ENST00000566703 RLBP1P12271 317 aa18.34■□□□□ 0.53
RNF40-209ENST00000566703 FLT3LGP49771 235 aa18.34■□□□□ 0.53
RNF40-209ENST00000566703 RRP1BQ14684 758 aaKnown RBP18.34■□□□□ 0.53
RNF40-209ENST00000566703 FAM110CQ1W6H9 321 aa18.34■□□□□ 0.53
RNF40-209ENST00000566703 TGFBRAP1Q8WUH2 860 aa18.34■□□□□ 0.53
RNF40-209ENST00000566703 COA7Q96BR5 231 aa18.34■□□□□ 0.53
RNF40-209ENST00000566703 RNF208Q9H0X6 261 aa18.34■□□□□ 0.53
RNF40-209ENST00000566703 C1orf115Q9H7X2 142 aa18.34■□□□□ 0.53
RNF40-209ENST00000566703 FRMD4AQ9P2Q2 1039 aaPredicted RBP18.34■□□□□ 0.53
RNF40-209ENST00000566703 DBNLQ9UJU6 430 aaKnown RBP18.34■□□□□ 0.53
RNF40-209ENST00000566703 ZSWIM8A7E2V4 1837 aa18.34■□□□□ 0.53
RNF40-209ENST00000566703 DOCK1Q14185 1865 aa18.33■□□□□ 0.53
RNF40-209ENST00000566703 ADCY3O60266 1144 aa18.33■□□□□ 0.52
RNF40-209ENST00000566703 TREML2Q5T2D2 321 aa18.33■□□□□ 0.52
RNF40-209ENST00000566703 EAF2Q96CJ1 260 aaPredicted RBP18.33■□□□□ 0.52
RNF40-209ENST00000566703 SHISA4Q96DD7 197 aa18.33■□□□□ 0.52
RNF40-209ENST00000566703 HTTP42858 3142 aa18.33■□□□□ 0.52
RNF40-209ENST00000566703 C19orf81C9J6K1 198 aa18.32■□□□□ 0.52
RNF40-209ENST00000566703 HMGCS2P54868 508 aa18.32■□□□□ 0.52
RNF40-209ENST00000566703 ERC1Q8IUD2 1116 aa18.32■□□□□ 0.52
RNF40-209ENST00000566703 MAPKAPK5Q8IW41 473 aa18.32■□□□□ 0.52
RNF40-209ENST00000566703 ANKRD13CQ8N6S4 541 aa18.32■□□□□ 0.52
RNF40-209ENST00000566703 CCDC8Q9H0W5 538 aaPredicted RBP18.32■□□□□ 0.52
RNF40-209ENST00000566703 PIH1D3Q9NQM4 214 aaKnown RBP18.32■□□□□ 0.52
RNF40-209ENST00000566703 FLT1P17948 1338 aa18.31■□□□□ 0.52
RNF40-209ENST00000566703 PHIPQ8WWQ0 1821 aa18.31■□□□□ 0.52
RNF40-209ENST00000566703 SGPL1O95470 568 aa18.31■□□□□ 0.52
RNF40-209ENST00000566703 MS4A1P11836 297 aa18.31■□□□□ 0.52
RNF40-209ENST00000566703 CYP7A1P22680 504 aa18.31■□□□□ 0.52
RNF40-209ENST00000566703 HOXA7P31268 230 aaPredicted RBP18.31■□□□□ 0.52
RNF40-209ENST00000566703 BACE1P56817 501 aa18.31■□□□□ 0.52
RNF40-209ENST00000566703 HSP90AB4PQ58FF6 505 aa18.31■□□□□ 0.52
RNF40-209ENST00000566703 DIEXFQ68CQ4 756 aaKnown RBP18.31■□□□□ 0.52
RNF40-209ENST00000566703 CEP85Q6P2H3 762 aa18.31■□□□□ 0.52
RNF40-209ENST00000566703 UBE2Q1Q7Z7E8 422 aa18.31■□□□□ 0.52
RNF40-209ENST00000566703 ADGRA1Q86SQ6 560 aa18.31■□□□□ 0.52
RNF40-209ENST00000566703 CRACR2BQ8N4Y2 399 aaPredicted RBP18.31■□□□□ 0.52
RNF40-209ENST00000566703 HLA-DOAP06340 250 aa18.3■□□□□ 0.52
RNF40-209ENST00000566703 U2AF1L4Q8WU68 220 aaKnown RBP18.3■□□□□ 0.52
RNF40-209ENST00000566703 TRIM34Q9BYJ4 488 aa18.3■□□□□ 0.52
RNF40-209ENST00000566703 ASCC2Q9H1I8 757 aaPredicted RBP18.3■□□□□ 0.52
RNF40-209ENST00000566703 TMOD4Q9NZQ9 345 aa18.3■□□□□ 0.52
RNF40-209ENST00000566703 PALD1Q9ULE6 856 aa18.3■□□□□ 0.52
RNF40-209ENST00000566703 ZBED9Q6R2W3 1325 aa18.29■□□□□ 0.52
RNF40-209ENST00000566703 HTATIP2Q9BUP3 242 aa18.29■□□□□ 0.52
RNF40-209ENST00000566703 UNC93B1Q9H1C4 597 aa18.29■□□□□ 0.52
RNF40-209ENST00000566703 DNAJC18Q9H819 358 aa18.29■□□□□ 0.52
RNF40-209ENST00000566703 TLR7Q9NYK1 1049 aaKnown RBP18.29■□□□□ 0.52
RNF40-209ENST00000566703 MORF4L1Q9UBU8 362 aa18.29■□□□□ 0.52
RNF40-209ENST00000566703 PTPRFP10586 1907 aa18.29■□□□□ 0.52
RNF40-209ENST00000566703 USP17L10C9JJH3 530 aa18.28■□□□□ 0.52
RNF40-209ENST00000566703 IDH1O75874 414 aaKnown RBP18.28■□□□□ 0.52
RNF40-209ENST00000566703 INHAP05111 366 aa18.28■□□□□ 0.52
RNF40-209ENST00000566703 ELNP15502 786 aa18.28■□□□□ 0.52
RNF40-209ENST00000566703 DYNLL1P63167 89 aaKnown RBP18.28■□□□□ 0.52
RNF40-209ENST00000566703 MAP3K12Q12852 859 aa18.28■□□□□ 0.52
RNF40-209ENST00000566703 H0YGN5 161 aa18.27■□□□□ 0.52
RNF40-209ENST00000566703 MTMR2Q13614 643 aa18.27■□□□□ 0.52
RNF40-209ENST00000566703 DPF3Q92784 378 aa18.27■□□□□ 0.52
RNF40-209ENST00000566703 GJD2Q9UKL4 321 aa18.27■□□□□ 0.52
RNF40-209ENST00000566703 ZBTB21Q9ULJ3 1066 aa18.27■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms