RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 DDX24Q9GZR7 859 aaKnown RBP eCLIP20.87■□□□□ 0.933e-6■■■■■ 36.1
CLN3-217ENST00000565354 BAG3O95817 575 aa20.86■□□□□ 0.93
CLN3-217ENST00000565354 CACNB3P54284 484 aa20.86■□□□□ 0.93
CLN3-217ENST00000565354 CDC42EP5Q6NZY7 148 aa20.86■□□□□ 0.93
CLN3-217ENST00000565354 ERO1BQ86YB8 467 aa20.86■□□□□ 0.93
CLN3-217ENST00000565354 CCDC136Q96JN2 1154 aa20.86■□□□□ 0.93
CLN3-217ENST00000565354 SNCAIPQ9Y6H5 919 aa20.86■□□□□ 0.93
CLN3-217ENST00000565354 MYO5AQ9Y4I1 1855 aaKnown RBP20.86■□□□□ 0.93
CLN3-217ENST00000565354 DOCK2Q92608 1830 aa20.85■□□□□ 0.93
CLN3-217ENST00000565354 BTBD19C9JJ37 291 aa20.85■□□□□ 0.93
CLN3-217ENST00000565354 PRMT2P55345 433 aa20.85■□□□□ 0.93
CLN3-217ENST00000565354 GPR75-ASB3A0A0A6YYF3 556 aa20.84■□□□□ 0.93
CLN3-217ENST00000565354 MAP4K4O95819 1239 aaPredicted RBP20.84■□□□□ 0.93
CLN3-217ENST00000565354 PDE1AP54750 535 aa20.84■□□□□ 0.93
CLN3-217ENST00000565354 SNAPC2Q13487 334 aa20.84■□□□□ 0.93
CLN3-217ENST00000565354 SLC9C2Q5TAH2 1124 aa20.84■□□□□ 0.93
CLN3-217ENST00000565354 ZSCAN25Q6NSZ9 544 aa20.84■□□□□ 0.93
CLN3-217ENST00000565354 TMED8Q6PL24 325 aaPredicted RBP20.84■□□□□ 0.93
CLN3-217ENST00000565354 ZNF384Q8TF68 577 aa20.84■□□□□ 0.93
CLN3-217ENST00000565354 SALL3Q9BXA9 1300 aa20.83■□□□□ 0.93
CLN3-217ENST00000565354 IRF6O14896 467 aa20.83■□□□□ 0.93
CLN3-217ENST00000565354 PLCG2P16885 1265 aa20.83■□□□□ 0.93
CLN3-217ENST00000565354 CHRDL2Q6WN34 429 aa20.83■□□□□ 0.93
CLN3-217ENST00000565354 PI4K2BQ8TCG2 481 aa20.83■□□□□ 0.93
CLN3-217ENST00000565354 WRNIP1Q96S55 665 aa20.83■□□□□ 0.93
CLN3-217ENST00000565354 AATFQ9NY61 560 aaKnown RBP eCLIP20.83■□□□□ 0.93
CLN3-217ENST00000565354 STAP2Q9UGK3 403 aa20.83■□□□□ 0.93
CLN3-217ENST00000565354 PDE6AP16499 860 aa20.82■□□□□ 0.92
CLN3-217ENST00000565354 PPIL2Q13356 520 aa20.82■□□□□ 0.92
CLN3-217ENST00000565354 MTFR1Q15390 333 aa20.82■□□□□ 0.92
CLN3-217ENST00000565354 LRRFIP1Q32MZ4 808 aaKnown RBP20.82■□□□□ 0.92
CLN3-217ENST00000565354 FKBP1CQ5VVH2 108 aa20.82■□□□□ 0.92
CLN3-217ENST00000565354 CENPQQ7L2Z9 268 aaPredicted RBP20.82■□□□□ 0.92
CLN3-217ENST00000565354 ZKSCAN4Q969J2 545 aaPredicted RBP20.82■□□□□ 0.92
CLN3-217ENST00000565354 SHISA4Q96DD7 197 aa20.82■□□□□ 0.92
CLN3-217ENST00000565354 TCP10Q12799 353 aa20.81■□□□□ 0.92
CLN3-217ENST00000565354 PICALMQ13492 652 aa20.81■□□□□ 0.92
CLN3-217ENST00000565354 FAM83AQ86UY5 434 aa20.81■□□□□ 0.92
CLN3-217ENST00000565354 TEX11Q8IYF3 940 aa20.81■□□□□ 0.92
CLN3-217ENST00000565354 HOOK2Q96ED9 719 aa20.81■□□□□ 0.92
CLN3-217ENST00000565354 ZNF532Q9HCE3 1301 aa20.8■□□□□ 0.92
CLN3-217ENST00000565354 C17orf99Q6UX52 265 aa20.8■□□□□ 0.92
CLN3-217ENST00000565354 CERS3Q8IU89 383 aa20.8■□□□□ 0.92
CLN3-217ENST00000565354 KBTBD3Q8NAB2 608 aa20.8■□□□□ 0.92
CLN3-217ENST00000565354 MIGA1Q8NAN2 632 aa20.8■□□□□ 0.92
CLN3-217ENST00000565354 DPF3Q92784 378 aa20.8■□□□□ 0.92
CLN3-217ENST00000565354 FSD1Q9BTV5 496 aa20.8■□□□□ 0.92
CLN3-217ENST00000565354 RBM27Q9P2N5 1060 aaKnown RBP20.8■□□□□ 0.92
CLN3-217ENST00000565354 SRRDQ9UH36 339 aa20.8■□□□□ 0.92
CLN3-217ENST00000565354 TRIM6-TRIM34B2RNG4 842 aa20.79■□□□□ 0.92
CLN3-217ENST00000565354 ADD2P35612 726 aa20.79■□□□□ 0.92
CLN3-217ENST00000565354 ERICH6BQ5W0A0 696 aa20.79■□□□□ 0.92
CLN3-217ENST00000565354 ADGRA1Q86SQ6 560 aa20.79■□□□□ 0.92
CLN3-217ENST00000565354 PLEKHM2Q8IWE5 1019 aa20.79■□□□□ 0.92
CLN3-217ENST00000565354 NKX2-3Q8TAU0 364 aa20.79■□□□□ 0.92
CLN3-217ENST00000565354 FAM151AQ8WW52 585 aa20.79■□□□□ 0.92
CLN3-217ENST00000565354 TRIM47Q96LD4 638 aa20.79■□□□□ 0.92
CLN3-217ENST00000565354 MAGEB6P1A0A0J9YX57 407 aa20.78■□□□□ 0.92
CLN3-217ENST00000565354 ECM2O94769 699 aaPredicted RBP20.78■□□□□ 0.92
CLN3-217ENST00000565354 CTGFP29279 349 aa20.78■□□□□ 0.92
CLN3-217ENST00000565354 PSMC4P43686 418 aa20.78■□□□□ 0.92
CLN3-217ENST00000565354 RGS3P49796 1198 aa20.78■□□□□ 0.92
CLN3-217ENST00000565354 RHBDL3P58872 404 aa20.78■□□□□ 0.92
CLN3-217ENST00000565354 PPP4CP60510 307 aa20.78■□□□□ 0.92
CLN3-217ENST00000565354 DYNLL1P63167 89 aaKnown RBP20.78■□□□□ 0.92
CLN3-217ENST00000565354 PPATQ06203 517 aa20.78■□□□□ 0.92
CLN3-217ENST00000565354 NFIAQ12857 509 aa20.78■□□□□ 0.92
CLN3-217ENST00000565354 DCAF15Q66K64 600 aa20.78■□□□□ 0.92
CLN3-217ENST00000565354 ZSCAN29Q8IWY8 852 aaPredicted RBP20.78■□□□□ 0.92
CLN3-217ENST00000565354 SH3RF3Q8TEJ3 882 aaPredicted RBP20.78■□□□□ 0.92
CLN3-217ENST00000565354 IDI2Q9BXS1 227 aa20.78■□□□□ 0.92
CLN3-217ENST00000565354 CPA4Q9UI42 421 aa20.78■□□□□ 0.92
CLN3-217ENST00000565354 MYH7P12883 1935 aa20.78■□□□□ 0.92
CLN3-217ENST00000565354 AK9Q5TCS8 1911 aa20.78■□□□□ 0.92
CLN3-217ENST00000565354 RPAP1Q9BWH6 1393 aaPredicted RBP20.77■□□□□ 0.92
CLN3-217ENST00000565354 ENTPD3O75355 529 aa20.77■□□□□ 0.92
CLN3-217ENST00000565354 HOXD10P28358 340 aa20.77■□□□□ 0.92
CLN3-217ENST00000565354 GRK4P32298 578 aa20.77■□□□□ 0.92
CLN3-217ENST00000565354 EVI5LQ96CN4 794 aa20.77■□□□□ 0.92
CLN3-217ENST00000565354 FAM198AQ9UFP1 575 aa20.77■□□□□ 0.92
CLN3-217ENST00000565354 MGAMO43451 1857 aa20.77■□□□□ 0.92
CLN3-217ENST00000565354 ZFYP08048 801 aaPredicted RBP20.76■□□□□ 0.91
CLN3-217ENST00000565354 OSBPP22059 807 aa20.76■□□□□ 0.91
CLN3-217ENST00000565354 USP5P45974 858 aa20.76■□□□□ 0.91
CLN3-217ENST00000565354 GJA8P48165 433 aa20.76■□□□□ 0.91
CLN3-217ENST00000565354 UBE3CQ15386 1083 aa20.76■□□□□ 0.91
CLN3-217ENST00000565354 UBE2Q1Q7Z7E8 422 aa20.76■□□□□ 0.91
CLN3-217ENST00000565354 ANKRD23Q86SG2 305 aa20.76■□□□□ 0.91
CLN3-217ENST00000565354 RAET1EQ8TD07 263 aa20.76■□□□□ 0.91
CLN3-217ENST00000565354 RILPL2Q969X0 211 aa20.76■□□□□ 0.91
CLN3-217ENST00000565354 HTATIP2Q9BUP3 242 aa20.76■□□□□ 0.91
CLN3-217ENST00000565354 ZNF341Q9BYN7 854 aa20.76■□□□□ 0.91
CLN3-217ENST00000565354 OSBPL3Q9H4L5 887 aa20.76■□□□□ 0.91
CLN3-217ENST00000565354 ADGRA2Q96PE1 1338 aa20.76■□□□□ 0.91
CLN3-217ENST00000565354 TCRBV5S4A2TA0A5A2 114 aa20.75■□□□□ 0.91
CLN3-217ENST00000565354 PDHXO00330 501 aa20.75■□□□□ 0.91
CLN3-217ENST00000565354 RNF113AO15541 343 aaKnown RBP20.75■□□□□ 0.91
CLN3-217ENST00000565354 FMNL1O95466 1100 aaPredicted RBP20.75■□□□□ 0.91
CLN3-217ENST00000565354 GJB1P08034 283 aa20.75■□□□□ 0.91
CLN3-217ENST00000565354 CCL5P13501 91 aa20.75■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms