RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 PPIL4Q8WUA2 492 aaKnown RBP eCLIP18.16■□□□□ 0.5
CLN3-213ENST00000565047 TGFBRAP1Q8WUH2 860 aa18.16■□□□□ 0.5
CLN3-213ENST00000565047 CHMP4BQ9H444 224 aaKnown RBP18.16■□□□□ 0.5
CLN3-213ENST00000565047 DNAJC18Q9H819 358 aa18.16■□□□□ 0.5
CLN3-213ENST00000565047 EFCC1Q9HA90 598 aa18.16■□□□□ 0.5
CLN3-213ENST00000565047 XPO5Q9HAV4 1204 aaKnown RBP eCLIP18.16■□□□□ 0.5
CLN3-213ENST00000565047 PICK1Q9NRD5 415 aa18.16■□□□□ 0.5
CLN3-213ENST00000565047 IDH1O75874 414 aaKnown RBP18.15■□□□□ 0.5
CLN3-213ENST00000565047 CYP7A1P22680 504 aa18.15■□□□□ 0.5
CLN3-213ENST00000565047 JAG1P78504 1218 aa18.15■□□□□ 0.5
CLN3-213ENST00000565047 TMED8Q6PL24 325 aaPredicted RBP18.15■□□□□ 0.5
CLN3-213ENST00000565047 CCDC84Q86UT8 332 aaPredicted RBP18.15■□□□□ 0.5
CLN3-213ENST00000565047 CLASRPQ8N2M8 674 aaKnown RBP18.15■□□□□ 0.5
CLN3-213ENST00000565047 ARHGAP39Q9C0H5 1083 aa18.15■□□□□ 0.5
CLN3-213ENST00000565047 DHX36Q9H2U1 1008 aaKnown RBP18.15■□□□□ 0.5
CLN3-213ENST00000565047 PI4KBQ9UBF8 816 aa18.15■□□□□ 0.5
CLN3-213ENST00000565047 HERC5Q9UII4 1024 aaKnown RBP18.15■□□□□ 0.5
CLN3-213ENST00000565047 CAP2P40123 477 aa18.14■□□□□ 0.49
CLN3-213ENST00000565047 LACTBP83111 547 aaPredicted RBP18.14■□□□□ 0.49
CLN3-213ENST00000565047 MAPKAPK5Q8IW41 473 aa18.14■□□□□ 0.49
CLN3-213ENST00000565047 MAGEB6Q8N7X4 407 aa18.14■□□□□ 0.49
CLN3-213ENST00000565047 RIOK1Q9BRS2 568 aaKnown RBP18.14■□□□□ 0.49
CLN3-213ENST00000565047 PTPRFP10586 1907 aa18.13■□□□□ 0.49
CLN3-213ENST00000565047 APBB1O00213 710 aa18.13■□□□□ 0.49
CLN3-213ENST00000565047 FASTKD5Q7L8L6 764 aaKnown RBP18.13■□□□□ 0.49
CLN3-213ENST00000565047 ARMC5Q96C12 935 aa18.13■□□□□ 0.49
CLN3-213ENST00000565047 NOL10Q9BSC4 688 aaKnown RBP18.13■□□□□ 0.49
CLN3-213ENST00000565047 PALD1Q9ULE6 856 aa18.13■□□□□ 0.49
CLN3-213ENST00000565047 SLC45A1Q9Y2W3 748 aa18.13■□□□□ 0.49
CLN3-213ENST00000565047 ZSWIM8A7E2V4 1837 aa18.13■□□□□ 0.49
CLN3-213ENST00000565047 TCRBV5S4A2TA0A5A2 114 aa18.12■□□□□ 0.49
CLN3-213ENST00000565047 BCRP11274 1271 aa18.12■□□□□ 0.49
CLN3-213ENST00000565047 MAP3K12Q12852 859 aa18.12■□□□□ 0.49
CLN3-213ENST00000565047 FOXP4Q8IVH2 680 aaPredicted RBP18.12■□□□□ 0.49
CLN3-213ENST00000565047 MIGA1Q8NAN2 632 aa18.12■□□□□ 0.49
CLN3-213ENST00000565047 CPA4Q9UI42 421 aa18.12■□□□□ 0.49
CLN3-213ENST00000565047 MKI67P46013 3256 aaKnown RBP18.11■□□□□ 0.49
CLN3-213ENST00000565047 IFIT2P09913 472 aaKnown RBP18.11■□□□□ 0.49
CLN3-213ENST00000565047 CYP2C8P10632 490 aa18.11■□□□□ 0.49
CLN3-213ENST00000565047 EDC3Q96F86 508 aaKnown RBP18.11■□□□□ 0.49
CLN3-213ENST00000565047 TRIM75PA6NK02 468 aa18.1■□□□□ 0.49
CLN3-213ENST00000565047 ATP5JP18859 108 aa18.1■□□□□ 0.49
CLN3-213ENST00000565047 TTF1Q15361 905 aaPredicted RBP18.1■□□□□ 0.49
CLN3-213ENST00000565047 SHROOM1Q2M3G4 852 aaPredicted RBP18.1■□□□□ 0.49
CLN3-213ENST00000565047 SH3D19Q5HYK7 790 aa18.1■□□□□ 0.49
CLN3-213ENST00000565047 CERS3Q8IU89 383 aa18.1■□□□□ 0.49
CLN3-213ENST00000565047 ZNF280CQ8ND82 737 aa18.1■□□□□ 0.49
CLN3-213ENST00000565047 DCTPP1Q9H773 170 aa18.1■□□□□ 0.49
CLN3-213ENST00000565047 PTCH2Q9Y6C5 1203 aa18.1■□□□□ 0.49
CLN3-213ENST00000565047 GOLIM4O00461 696 aa18.09■□□□□ 0.49
CLN3-213ENST00000565047 PDE6AP16499 860 aa18.09■□□□□ 0.49
CLN3-213ENST00000565047 SPP2Q13103 211 aa18.09■□□□□ 0.49
CLN3-213ENST00000565047 TREML2Q5T2D2 321 aa18.09■□□□□ 0.49
CLN3-213ENST00000565047 TRIM47Q96LD4 638 aa18.09■□□□□ 0.49
CLN3-213ENST00000565047 PARK7Q99497 189 aaKnown RBP18.09■□□□□ 0.49
CLN3-213ENST00000565047 WDR18Q9BV38 432 aa18.09■□□□□ 0.49
CLN3-213ENST00000565047 TBC1D2Q9BYX2 928 aa18.09■□□□□ 0.49
CLN3-213ENST00000565047 SAP30BPQ9UHR5 308 aaKnown RBP18.09■□□□□ 0.49
CLN3-213ENST00000565047 AGTPBP1Q9UPW5 1226 aa18.09■□□□□ 0.49
CLN3-213ENST00000565047 ATAD5Q96QE3 1844 aa18.08■□□□□ 0.48
CLN3-213ENST00000565047 USP17L5A8MUK1 530 aa18.08■□□□□ 0.48
CLN3-213ENST00000565047 GNRH1P01148 92 aa18.08■□□□□ 0.48
CLN3-213ENST00000565047 ARHGEF6Q15052 776 aa18.08■□□□□ 0.48
CLN3-213ENST00000565047 SLC9C2Q5TAH2 1124 aa18.08■□□□□ 0.48
CLN3-213ENST00000565047 TATDN1Q6P1N9 297 aa18.08■□□□□ 0.48
CLN3-213ENST00000565047 GADL1Q6ZQY3 521 aa18.08■□□□□ 0.48
CLN3-213ENST00000565047 PROCA1Q8NCQ7 364 aaPredicted RBP18.08■□□□□ 0.48
CLN3-213ENST00000565047 ZNF333Q96JL9 665 aa18.08■□□□□ 0.48
CLN3-213ENST00000565047 HAUS7Q99871 368 aa18.08■□□□□ 0.48
CLN3-213ENST00000565047 BOLA2Q9H3K6 86 aa18.08■□□□□ 0.48
CLN3-213ENST00000565047 DDX60LQ5H9U9 1706 aaKnown RBP18.08■□□□□ 0.48
CLN3-213ENST00000565047 LOC285556D6RIA3 1793 aa18.07■□□□□ 0.48
CLN3-213ENST00000565047 ZNF532Q9HCE3 1301 aa18.07■□□□□ 0.48
CLN3-213ENST00000565047 POTEFA5A3E0 1075 aa18.07■□□□□ 0.48
CLN3-213ENST00000565047 SMARCA5O60264 1052 aaPredicted RBP18.07■□□□□ 0.48
CLN3-213ENST00000565047 LRRCC1Q9C099 1032 aa18.07■□□□□ 0.48
CLN3-213ENST00000565047 EHD4Q9H223 541 aa18.07■□□□□ 0.48
CLN3-213ENST00000565047 GINM1Q9NU53 330 aa18.07■□□□□ 0.48
CLN3-213ENST00000565047 PCDHB15Q9Y5E8 787 aa18.07■□□□□ 0.48
CLN3-213ENST00000565047 CHGBP05060 677 aa18.06■□□□□ 0.48
CLN3-213ENST00000565047 PSMC4P43686 418 aa18.06■□□□□ 0.48
CLN3-213ENST00000565047 PLCD1P51178 756 aa18.06■□□□□ 0.48
CLN3-213ENST00000565047 PRMT2P55345 433 aa18.06■□□□□ 0.48
CLN3-213ENST00000565047 GABPAQ06546 454 aa18.06■□□□□ 0.48
CLN3-213ENST00000565047 SLFNL1Q499Z3 407 aa18.06■□□□□ 0.48
CLN3-213ENST00000565047 DNAJC2Q99543 621 aaKnown RBP18.06■□□□□ 0.48
CLN3-213ENST00000565047 PAG1Q9NWQ8 432 aa18.06■□□□□ 0.48
CLN3-213ENST00000565047 SRRDQ9UH36 339 aa18.06■□□□□ 0.48
CLN3-213ENST00000565047 MAGEB6P1A0A0J9YX57 407 aa18.05■□□□□ 0.48
CLN3-213ENST00000565047 ASNSP08243 561 aa18.05■□□□□ 0.48
CLN3-213ENST00000565047 OSBPP22059 807 aa18.05■□□□□ 0.48
CLN3-213ENST00000565047 ADD2P35612 726 aa18.05■□□□□ 0.48
CLN3-213ENST00000565047 HMGCS2P54868 508 aa18.05■□□□□ 0.48
CLN3-213ENST00000565047 BACE1P56817 501 aa18.05■□□□□ 0.48
CLN3-213ENST00000565047 ZBTB21Q9ULJ3 1066 aa18.05■□□□□ 0.48
CLN3-213ENST00000565047 MYH1P12882 1939 aa18.05■□□□□ 0.48
CLN3-213ENST00000565047 RBBP6Q7Z6E9 1792 aaKnown RBP18.04■□□□□ 0.48
CLN3-213ENST00000565047 GDF11O95390 407 aa18.04■□□□□ 0.48
CLN3-213ENST00000565047 HLA-DOAP06340 250 aa18.04■□□□□ 0.48
CLN3-213ENST00000565047 USP5P45974 858 aa18.04■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms