RNA–Protein interactions for RNA: ENST00000565023.1

VPS9D1-204, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 5

Gene VPS9D1, Length 775 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-204ENST00000565023 GADL1Q6ZQY3 521 aa16.57■□□□□ 0.24
VPS9D1-204ENST00000565023 ERO1AQ96HE7 468 aa16.57■□□□□ 0.24
VPS9D1-204ENST00000565023 TRIM34Q9BYJ4 488 aa16.57■□□□□ 0.24
VPS9D1-204ENST00000565023 LRRCC1Q9C099 1032 aa16.57■□□□□ 0.24
VPS9D1-204ENST00000565023 PALD1Q9ULE6 856 aa16.57■□□□□ 0.24
VPS9D1-204ENST00000565023 PTPRFP10586 1907 aa16.57■□□□□ 0.24
VPS9D1-204ENST00000565023 NPM3O75607 178 aaKnown RBP16.56■□□□□ 0.24
VPS9D1-204ENST00000565023 PTPRAP18433 802 aa16.56■□□□□ 0.24
VPS9D1-204ENST00000565023 USP5P45974 858 aa16.56■□□□□ 0.24
VPS9D1-204ENST00000565023 OTOP1Q7RTM1 612 aa16.56■□□□□ 0.24
VPS9D1-204ENST00000565023 CRACR2BQ8N4Y2 399 aaPredicted RBP16.56■□□□□ 0.24
VPS9D1-204ENST00000565023 CRBNQ96SW2 442 aa16.56■□□□□ 0.24
VPS9D1-204ENST00000565023 KCNH4Q9UQ05 1017 aa16.56■□□□□ 0.24
VPS9D1-204ENST00000565023 SUPT16HQ9Y5B9 1047 aaKnown RBP16.56■□□□□ 0.24
VPS9D1-204ENST00000565023 TRIM75PA6NK02 468 aa16.55■□□□□ 0.24
VPS9D1-204ENST00000565023 PDHXO00330 501 aa16.55■□□□□ 0.24
VPS9D1-204ENST00000565023 CTNND1O60716 968 aaKnown RBP16.55■□□□□ 0.24
VPS9D1-204ENST00000565023 MAP3K10Q02779 954 aa16.55■□□□□ 0.24
VPS9D1-204ENST00000565023 TTF1Q15361 905 aaPredicted RBP16.55■□□□□ 0.24
VPS9D1-204ENST00000565023 PKN2Q16513 984 aaKnown RBP16.55■□□□□ 0.24
VPS9D1-204ENST00000565023 FBXO46Q6PJ61 603 aaPredicted RBP16.55■□□□□ 0.24
VPS9D1-204ENST00000565023 CPA4Q9UI42 421 aa16.55■□□□□ 0.24
VPS9D1-204ENST00000565023 COL2A1P02458 1487 aaPredicted RBP16.54■□□□□ 0.24
VPS9D1-204ENST00000565023 CXCL11O14625 94 aa16.54■□□□□ 0.24
VPS9D1-204ENST00000565023 TBC1D12O60347 775 aa16.54■□□□□ 0.24
VPS9D1-204ENST00000565023 CAP1Q01518 475 aa16.54■□□□□ 0.24
VPS9D1-204ENST00000565023 RRP1BQ14684 758 aaKnown RBP16.54■□□□□ 0.24
VPS9D1-204ENST00000565023 SLC9C2Q5TAH2 1124 aa16.54■□□□□ 0.24
VPS9D1-204ENST00000565023 ANKRD23Q86SG2 305 aa16.54■□□□□ 0.24
VPS9D1-204ENST00000565023 EFCC1Q9HA90 598 aa16.54■□□□□ 0.24
VPS9D1-204ENST00000565023 PI4KBQ9UBF8 816 aa16.54■□□□□ 0.24
VPS9D1-204ENST00000565023 MYH7P12883 1935 aa16.54■□□□□ 0.24
VPS9D1-204ENST00000565023 NAV1Q8NEY1 1877 aa16.54■□□□□ 0.24
VPS9D1-204ENST00000565023 ZNF532Q9HCE3 1301 aa16.53■□□□□ 0.24
VPS9D1-204ENST00000565023 MAGEB6P1A0A0J9YX57 407 aa16.53■□□□□ 0.24
VPS9D1-204ENST00000565023 GDF11O95390 407 aa16.53■□□□□ 0.24
VPS9D1-204ENST00000565023 HLA-DOAP06340 250 aa16.53■□□□□ 0.24
VPS9D1-204ENST00000565023 PDE6AP16499 860 aa16.53■□□□□ 0.24
VPS9D1-204ENST00000565023 SLFNL1Q499Z3 407 aa16.53■□□□□ 0.24
VPS9D1-204ENST00000565023 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.53■□□□□ 0.24
VPS9D1-204ENST00000565023 DHX36Q9H2U1 1008 aaKnown RBP16.53■□□□□ 0.24
VPS9D1-204ENST00000565023 PAG1Q9NWQ8 432 aa16.53■□□□□ 0.24
VPS9D1-204ENST00000565023 AFG3L2Q9Y4W6 797 aa16.53■□□□□ 0.24
VPS9D1-204ENST00000565023 PCDHB15Q9Y5E8 787 aa16.53■□□□□ 0.24
VPS9D1-204ENST00000565023 TLR2O60603 784 aa16.52■□□□□ 0.24
VPS9D1-204ENST00000565023 CYP2C8P10632 490 aa16.52■□□□□ 0.24
VPS9D1-204ENST00000565023 MOGSQ13724 837 aa16.52■□□□□ 0.24
VPS9D1-204ENST00000565023 SHROOM1Q2M3G4 852 aaPredicted RBP16.52■□□□□ 0.24
VPS9D1-204ENST00000565023 ARHGAP39Q9C0H5 1083 aa16.52■□□□□ 0.24
VPS9D1-204ENST00000565023 HERC5Q9UII4 1024 aaKnown RBP16.52■□□□□ 0.24
VPS9D1-204ENST00000565023 A0A0G2JLL6 359 aaPredicted RBP16.51■□□□□ 0.23
VPS9D1-204ENST00000565023 IGSF3O75054 1194 aa16.51■□□□□ 0.23
VPS9D1-204ENST00000565023 ATP5JP18859 108 aa16.51■□□□□ 0.23
VPS9D1-204ENST00000565023 CAP2P40123 477 aa16.51■□□□□ 0.23
VPS9D1-204ENST00000565023 SPP2Q13103 211 aa16.51■□□□□ 0.23
VPS9D1-204ENST00000565023 TSHZ3Q63HK5 1081 aa16.51■□□□□ 0.23
VPS9D1-204ENST00000565023 GPAT2Q6NUI2 795 aa16.51■□□□□ 0.23
VPS9D1-204ENST00000565023 FASTKD5Q7L8L6 764 aaKnown RBP16.51■□□□□ 0.23
VPS9D1-204ENST00000565023 PRRT2Q7Z6L0 340 aaPredicted RBP16.51■□□□□ 0.23
VPS9D1-204ENST00000565023 DCTPP1Q9H773 170 aa16.51■□□□□ 0.23
VPS9D1-204ENST00000565023 DNAJC18Q9H819 358 aa16.51■□□□□ 0.23
VPS9D1-204ENST00000565023 ZCCHC17Q9NP64 241 aaKnown RBP16.51■□□□□ 0.23
VPS9D1-204ENST00000565023 CHGBP05060 677 aa16.5■□□□□ 0.23
VPS9D1-204ENST00000565023 AAMPQ13685 434 aa16.5■□□□□ 0.23
VPS9D1-204ENST00000565023 KIF22Q14807 665 aa16.5■□□□□ 0.23
VPS9D1-204ENST00000565023 PRPF38BQ5VTL8 546 aaKnown RBP16.5■□□□□ 0.23
VPS9D1-204ENST00000565023 FOXP4Q8IVH2 680 aaPredicted RBP16.5■□□□□ 0.23
VPS9D1-204ENST00000565023 RIOK1Q9BRS2 568 aaKnown RBP16.5■□□□□ 0.23
VPS9D1-204ENST00000565023 ARMT1Q9H993 441 aa16.5■□□□□ 0.23
VPS9D1-204ENST00000565023 PTPN22Q9Y2R2 807 aa16.5■□□□□ 0.23
VPS9D1-204ENST00000565023 BAZ2AQ9UIF9 1905 aaKnown RBP16.49■□□□□ 0.23
VPS9D1-204ENST00000565023 USP17L5A8MUK1 530 aa16.49■□□□□ 0.23
VPS9D1-204ENST00000565023 POLR3DP05423 398 aaPredicted RBP16.49■□□□□ 0.23
VPS9D1-204ENST00000565023 JAG1P78504 1218 aa16.49■□□□□ 0.23
VPS9D1-204ENST00000565023 CERS3Q8IU89 383 aa16.49■□□□□ 0.23
VPS9D1-204ENST00000565023 LCORLQ8N3X6 602 aa16.49■□□□□ 0.23
VPS9D1-204ENST00000565023 ZNF280CQ8ND82 737 aa16.49■□□□□ 0.23
VPS9D1-204ENST00000565023 SDR42E1Q8WUS8 393 aa16.49■□□□□ 0.23
VPS9D1-204ENST00000565023 PARK7Q99497 189 aaKnown RBP16.49■□□□□ 0.23
VPS9D1-204ENST00000565023 HAUS7Q99871 368 aa16.49■□□□□ 0.23
VPS9D1-204ENST00000565023 CRNKL1Q9BZJ0 848 aaKnown RBP16.49■□□□□ 0.23
VPS9D1-204ENST00000565023 MKI67P46013 3256 aaKnown RBP16.49■□□□□ 0.23
VPS9D1-204ENST00000565023 ADD2P35612 726 aa16.48■□□□□ 0.23
VPS9D1-204ENST00000565023 HMGCS2P54868 508 aa16.48■□□□□ 0.23
VPS9D1-204ENST00000565023 TREML2Q5T2D2 321 aa16.48■□□□□ 0.23
VPS9D1-204ENST00000565023 C17orf99Q6UX52 265 aa16.48■□□□□ 0.23
VPS9D1-204ENST00000565023 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.48■□□□□ 0.23
VPS9D1-204ENST00000565023 AS3MTQ9HBK9 375 aa16.48■□□□□ 0.23
VPS9D1-204ENST00000565023 ECHDC1Q9NTX5 307 aa16.48■□□□□ 0.23
VPS9D1-204ENST00000565023 MGAMO43451 1857 aa16.48■□□□□ 0.23
VPS9D1-204ENST00000565023 TCRBV5S4A2TA0A5A2 114 aa16.47■□□□□ 0.23
VPS9D1-204ENST00000565023 MBD4O95243 580 aa16.47■□□□□ 0.23
VPS9D1-204ENST00000565023 MYCP01106 439 aaPredicted RBP16.47■□□□□ 0.23
VPS9D1-204ENST00000565023 LACTBP83111 547 aaPredicted RBP16.47■□□□□ 0.23
VPS9D1-204ENST00000565023 EVX2Q03828 476 aa16.47■□□□□ 0.23
VPS9D1-204ENST00000565023 ARHGEF6Q15052 776 aa16.47■□□□□ 0.23
VPS9D1-204ENST00000565023 TTC6Q86TZ1 520 aa16.47■□□□□ 0.23
VPS9D1-204ENST00000565023 SMCR8Q8TEV9 937 aaPredicted RBP16.47■□□□□ 0.23
VPS9D1-204ENST00000565023 GPATCH3Q96I76 525 aa16.47■□□□□ 0.23
VPS9D1-204ENST00000565023 MCM9Q9NXL9 1143 aa16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms