RNA–Protein interactions for RNA: ENST00000564676.5

CDH1-206, Transcript of cadherin 1, humanhuman

TSL 1 (best)

Gene CDH1, Length 969 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-206ENST00000564676 LNPKQ9C0E8 428 aa12.01□□□□□ -0.49
CDH1-206ENST00000564676 DHX36Q9H2U1 1008 aaKnown RBP12.01□□□□□ -0.49
CDH1-206ENST00000564676 PICK1Q9NRD5 415 aa12.01□□□□□ -0.49
CDH1-206ENST00000564676 SAGE1Q9NXZ1 904 aa12.01□□□□□ -0.49
CDH1-206ENST00000564676 PI4KBQ9UBF8 816 aa12.01□□□□□ -0.49
CDH1-206ENST00000564676 PALD1Q9ULE6 856 aa12.01□□□□□ -0.49
CDH1-206ENST00000564676 FLT1P17948 1338 aa12.01□□□□□ -0.49
CDH1-206ENST00000564676 OTOFQ9HC10 1997 aa12.01□□□□□ -0.49
CDH1-206ENST00000564676 TCRBV5S4A2TA0A5A2 114 aa12□□□□□ -0.49
CDH1-206ENST00000564676 FAM196BA6NMK8 535 aa12□□□□□ -0.49
CDH1-206ENST00000564676 PHF20L1A8MW92 1017 aa12□□□□□ -0.49
CDH1-206ENST00000564676 TBC1D12O60347 775 aa12□□□□□ -0.49
CDH1-206ENST00000564676 HLA-DOAP06340 250 aa12□□□□□ -0.49
CDH1-206ENST00000564676 GTF2A2P52657 109 aa12□□□□□ -0.49
CDH1-206ENST00000564676 MAP3K10Q02779 954 aa12□□□□□ -0.49
CDH1-206ENST00000564676 UBE3CQ15386 1083 aa12□□□□□ -0.49
CDH1-206ENST00000564676 SLFNL1Q499Z3 407 aa12□□□□□ -0.49
CDH1-206ENST00000564676 NOL9Q5SY16 702 aaKnown RBP12□□□□□ -0.49
CDH1-206ENST00000564676 COL13A1Q5TAT6 717 aaPredicted RBP12□□□□□ -0.49
CDH1-206ENST00000564676 OTUD7BQ6GQQ9 843 aa12□□□□□ -0.49
CDH1-206ENST00000564676 FOXP4Q8IVH2 680 aaPredicted RBP12□□□□□ -0.49
CDH1-206ENST00000564676 KBTBD3Q8NAB2 608 aa12□□□□□ -0.49
CDH1-206ENST00000564676 RIOK1Q9BRS2 568 aaKnown RBP12□□□□□ -0.49
CDH1-206ENST00000564676 CRNKL1Q9BZJ0 848 aaKnown RBP12□□□□□ -0.49
CDH1-206ENST00000564676 CTNND1O60716 968 aaKnown RBP11.99□□□□□ -0.49
CDH1-206ENST00000564676 MBD4O95243 580 aa11.99□□□□□ -0.49
CDH1-206ENST00000564676 ALDH1A1P00352 501 aa11.99□□□□□ -0.49
CDH1-206ENST00000564676 PPATQ06203 517 aa11.99□□□□□ -0.49
CDH1-206ENST00000564676 PPIL2Q13356 520 aa11.99□□□□□ -0.49
CDH1-206ENST00000564676 SLC4A8Q2Y0W8 1093 aa11.99□□□□□ -0.49
CDH1-206ENST00000564676 LRRFIP1Q32MZ4 808 aaKnown RBP11.99□□□□□ -0.49
CDH1-206ENST00000564676 IFNL1Q8IU54 200 aa11.99□□□□□ -0.49
CDH1-206ENST00000564676 SCYL3Q8IZE3 742 aa11.99□□□□□ -0.49
CDH1-206ENST00000564676 LCORLQ8N3X6 602 aa11.99□□□□□ -0.49
CDH1-206ENST00000564676 CRACR2BQ8N4Y2 399 aaPredicted RBP11.99□□□□□ -0.49
CDH1-206ENST00000564676 PI4K2BQ8TCG2 481 aa11.99□□□□□ -0.49
CDH1-206ENST00000564676 ARMT1Q9H993 441 aa11.99□□□□□ -0.49
CDH1-206ENST00000564676 HERC5Q9UII4 1024 aaKnown RBP11.99□□□□□ -0.49
CDH1-206ENST00000564676 COL2A1P02458 1487 aaPredicted RBP11.99□□□□□ -0.49
CDH1-206ENST00000564676 CASP8AP2Q9UKL3 1982 aa11.98□□□□□ -0.49
CDH1-206ENST00000564676 CDK5RAP2Q96SN8 1893 aa11.98□□□□□ -0.49
CDH1-206ENST00000564676 CCL15-CCL14A0A0B4J2E2 113 aa11.98□□□□□ -0.49
CDH1-206ENST00000564676 IRF6O14896 467 aa11.98□□□□□ -0.49
CDH1-206ENST00000564676 TBC1D8O95759 1140 aa11.98□□□□□ -0.49
CDH1-206ENST00000564676 CHGBP05060 677 aa11.98□□□□□ -0.49
CDH1-206ENST00000564676 POLR3DP05423 398 aaPredicted RBP11.98□□□□□ -0.49
CDH1-206ENST00000564676 PDE1AP54750 535 aa11.98□□□□□ -0.49
CDH1-206ENST00000564676 SNAPC2Q13487 334 aa11.98□□□□□ -0.49
CDH1-206ENST00000564676 CCL15Q16663 113 aa11.98□□□□□ -0.49
CDH1-206ENST00000564676 TTC6Q86TZ1 520 aa11.98□□□□□ -0.49
CDH1-206ENST00000564676 CHD1LQ86WJ1 897 aa11.98□□□□□ -0.49
CDH1-206ENST00000564676 MS4A4AQ96JQ5 239 aa11.98□□□□□ -0.49
CDH1-206ENST00000564676 FSD1Q9BTV5 496 aa11.98□□□□□ -0.49
CDH1-206ENST00000564676 MYH1P12882 1939 aa11.98□□□□□ -0.49
CDH1-206ENST00000564676 MYH7P12883 1935 aa11.98□□□□□ -0.49
CDH1-206ENST00000564676 SALL3Q9BXA9 1300 aa11.97□□□□□ -0.49
CDH1-206ENST00000564676 TESPA1A2RU30 521 aaPredicted RBP11.97□□□□□ -0.49
CDH1-206ENST00000564676 IGF2BP3O00425 579 aaKnown RBP eCLIP11.97□□□□□ -0.49
CDH1-206ENST00000564676 RNF113AO15541 343 aaKnown RBP11.97□□□□□ -0.49
CDH1-206ENST00000564676 ZFYP08048 801 aaPredicted RBP11.97□□□□□ -0.49
CDH1-206ENST00000564676 CETPP11597 493 aa11.97□□□□□ -0.49
CDH1-206ENST00000564676 PTPRAP18433 802 aa11.97□□□□□ -0.49
CDH1-206ENST00000564676 NUCB1Q02818 461 aa11.97□□□□□ -0.49
CDH1-206ENST00000564676 SDR42E1Q8WUS8 393 aa11.97□□□□□ -0.49
CDH1-206ENST00000564676 BRI3BPQ8WY22 251 aa11.97□□□□□ -0.49
CDH1-206ENST00000564676 PTPN18Q99952 460 aa11.97□□□□□ -0.49
CDH1-206ENST00000564676 MCM9Q9NXL9 1143 aa11.97□□□□□ -0.49
CDH1-206ENST00000564676 STAP2Q9UGK3 403 aa11.97□□□□□ -0.49
CDH1-206ENST00000564676 ZHX2Q9Y6X8 837 aa11.97□□□□□ -0.49
CDH1-206ENST00000564676 FOCADQ5VW36 1801 aa11.96□□□□□ -0.49
CDH1-206ENST00000564676 PRKAB2O43741 272 aa11.96□□□□□ -0.49
CDH1-206ENST00000564676 CAP2P40123 477 aa11.96□□□□□ -0.49
CDH1-206ENST00000564676 EVX2Q03828 476 aa11.96□□□□□ -0.49
CDH1-206ENST00000564676 TNS4Q8IZW8 715 aa11.96□□□□□ -0.49
CDH1-206ENST00000564676 APPBP2Q92624 585 aa11.96□□□□□ -0.49
CDH1-206ENST00000564676 DDRGK1Q96HY6 314 aa11.96□□□□□ -0.49
CDH1-206ENST00000564676 PUS7LQ9H0K6 701 aaKnown RBP11.96□□□□□ -0.49
CDH1-206ENST00000564676 DCP1AQ9NPI6 582 aaPredicted RBP11.96□□□□□ -0.49
CDH1-206ENST00000564676 SERPINB13Q9UIV8 391 aa11.96□□□□□ -0.49
CDH1-206ENST00000564676 SLC4A4Q9Y6R1 1079 aa11.96□□□□□ -0.49
CDH1-206ENST00000564676 CXCL11O14625 94 aa11.95□□□□□ -0.5
CDH1-206ENST00000564676 RRP1BQ14684 758 aaKnown RBP11.95□□□□□ -0.5
CDH1-206ENST00000564676 METTL16Q86W50 562 aaKnown RBP11.95□□□□□ -0.5
CDH1-206ENST00000564676 AMOTL1Q8IY63 956 aa11.95□□□□□ -0.5
CDH1-206ENST00000564676 OSBP2Q969R2 916 aa11.95□□□□□ -0.5
CDH1-206ENST00000564676 EVI5LQ96CN4 794 aa11.95□□□□□ -0.5
CDH1-206ENST00000564676 ATP8A2Q9NTI2 1148 aa11.95□□□□□ -0.5
CDH1-206ENST00000564676 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.95□□□□□ -0.5
CDH1-206ENST00000564676 KCNH4Q9UQ05 1017 aa11.95□□□□□ -0.5
CDH1-206ENST00000564676 TRIM6-TRIM34B2RNG4 842 aa11.94□□□□□ -0.5
CDH1-206ENST00000564676 BTBD19C9JJ37 291 aa11.94□□□□□ -0.5
CDH1-206ENST00000564676 GPR25O00155 361 aa11.94□□□□□ -0.5
CDH1-206ENST00000564676 PLCD1P51178 756 aa11.94□□□□□ -0.5
CDH1-206ENST00000564676 TAF1CQ15572 869 aaPredicted RBP11.94□□□□□ -0.5
CDH1-206ENST00000564676 CCDC84Q86UT8 332 aaPredicted RBP11.94□□□□□ -0.5
CDH1-206ENST00000564676 PLEKHM2Q8IWE5 1019 aa11.94□□□□□ -0.5
CDH1-206ENST00000564676 FAM43AQ8N2R8 423 aa11.94□□□□□ -0.5
CDH1-206ENST00000564676 STRBPQ96SI9 672 aaKnown RBP11.94□□□□□ -0.5
CDH1-206ENST00000564676 EHD4Q9H223 541 aa11.94□□□□□ -0.5
CDH1-206ENST00000564676 R3HDMLQ9H3Y0 253 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms