RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 SUPT20HL1Q3ZLR7 823 aa24.51■■□□□ 1.51
CLN3-212ENST00000564574 MAP1SQ66K74 1059 aaPredicted RBP24.51■■□□□ 1.51
CLN3-212ENST00000564574 METTL16Q86W50 562 aaKnown RBP24.51■■□□□ 1.51
CLN3-212ENST00000564574 KCNB2Q92953 911 aa24.51■■□□□ 1.51
CLN3-212ENST00000564574 HERC5Q9UII4 1024 aaKnown RBP24.51■■□□□ 1.51
CLN3-212ENST00000564574 SERPINB13Q9UIV8 391 aa24.51■■□□□ 1.51
CLN3-212ENST00000564574 CYP2D7A0A087X1C5 515 aa24.5■■□□□ 1.51
CLN3-212ENST00000564574 TBC1D12O60347 775 aa24.5■■□□□ 1.51
CLN3-212ENST00000564574 PCP11498 1178 aaKnown RBP24.5■■□□□ 1.51
CLN3-212ENST00000564574 TRIM34Q9BYJ4 488 aa24.5■■□□□ 1.51
CLN3-212ENST00000564574 GLIS2Q9BZE0 524 aaPredicted RBP24.5■■□□□ 1.51
CLN3-212ENST00000564574 RNF41Q9H4P4 317 aaPredicted RBP24.5■■□□□ 1.51
CLN3-212ENST00000564574 ZNF287Q9HBT7 754 aa24.5■■□□□ 1.51
CLN3-212ENST00000564574 SWAP70Q9UH65 585 aa24.5■■□□□ 1.51
CLN3-212ENST00000564574 ZKSCAN1P17029 563 aaPredicted RBP24.49■■□□□ 1.51
CLN3-212ENST00000564574 HAND2P61296 217 aa24.49■■□□□ 1.51
CLN3-212ENST00000564574 GABPAQ06546 454 aa24.49■■□□□ 1.51
CLN3-212ENST00000564574 SLC4A8Q2Y0W8 1093 aa24.49■■□□□ 1.51
CLN3-212ENST00000564574 C16orf86Q6ZW13 317 aa24.49■■□□□ 1.51
CLN3-212ENST00000564574 CRACR2BQ8N4Y2 399 aaPredicted RBP24.49■■□□□ 1.51
CLN3-212ENST00000564574 NT5C2P49902 561 aa24.48■■□□□ 1.51
CLN3-212ENST00000564574 MAP3K10Q02779 954 aa24.48■■□□□ 1.51
CLN3-212ENST00000564574 CTDSPL2Q05D32 466 aa24.48■■□□□ 1.51
CLN3-212ENST00000564574 PDE4BQ07343 736 aa24.48■■□□□ 1.51
CLN3-212ENST00000564574 TSGA10IPQ3SY00 556 aa24.48■■□□□ 1.51
CLN3-212ENST00000564574 NBPF12Q5TAG4 269 aaPredicted RBP24.48■■□□□ 1.51
CLN3-212ENST00000564574 DCAF15Q66K64 600 aa24.48■■□□□ 1.51
CLN3-212ENST00000564574 STAG1Q8WVM7 1258 aa24.48■■□□□ 1.51
CLN3-212ENST00000564574 CDCA5Q96FF9 252 aa24.48■■□□□ 1.51
CLN3-212ENST00000564574 TRPM7Q96QT4 1865 aa24.47■■□□□ 1.51
CLN3-212ENST00000564574 TOMM70O94826 608 aa24.47■■□□□ 1.51
CLN3-212ENST00000564574 FGRP09769 529 aa24.47■■□□□ 1.51
CLN3-212ENST00000564574 NF2P35240 595 aa24.47■■□□□ 1.51
CLN3-212ENST00000564574 KRT32Q14532 448 aa24.47■■□□□ 1.51
CLN3-212ENST00000564574 AKNAD1Q5T1N1 836 aa24.47■■□□□ 1.51
CLN3-212ENST00000564574 CDAN1Q8IWY9 1227 aa24.47■■□□□ 1.51
CLN3-212ENST00000564574 ANAPC15P60006 121 aa24.46■■□□□ 1.51
CLN3-212ENST00000564574 EVX2Q03828 476 aa24.46■■□□□ 1.51
CLN3-212ENST00000564574 MFSD6Q6ZSS7 791 aa24.46■■□□□ 1.51
CLN3-212ENST00000564574 TBC1D10CQ8IV04 446 aa24.46■■□□□ 1.51
CLN3-212ENST00000564574 C22orf23Q9BZE7 217 aa24.46■■□□□ 1.51
CLN3-212ENST00000564574 NBPF3Q9H094 633 aa24.46■■□□□ 1.51
CLN3-212ENST00000564574 XPO5Q9HAV4 1204 aaKnown RBP eCLIP24.46■■□□□ 1.51
CLN3-212ENST00000564574 CDK8P49336 464 aa24.45■■□□□ 1.5
CLN3-212ENST00000564574 PRAMEF18Q5VWM3 479 aa24.45■■□□□ 1.5
CLN3-212ENST00000564574 SMC1BQ8NDV3 1235 aa24.45■■□□□ 1.5
CLN3-212ENST00000564574 RBM46Q8TBY0 533 aaKnown RBP24.45■■□□□ 1.5
CLN3-212ENST00000564574 DYNLL2Q96FJ2 89 aa24.45■■□□□ 1.5
CLN3-212ENST00000564574 CNNM2Q9H8M5 875 aa24.45■■□□□ 1.5
CLN3-212ENST00000564574 DDX52Q9Y2R4 599 aaKnown RBP eCLIP24.45■■□□□ 1.5
CLN3-212ENST00000564574 SSC5DA1L4H1 1573 aa24.45■■□□□ 1.5
CLN3-212ENST00000564574 E7EWF7 191 aa24.44■■□□□ 1.5
CLN3-212ENST00000564574 SMIM22K7EJ46 135 aa24.44■■□□□ 1.5
CLN3-212ENST00000564574 ORC4O43929 436 aa24.44■■□□□ 1.5
CLN3-212ENST00000564574 RBM25P49756 843 aaKnown RBP24.44■■□□□ 1.5
CLN3-212ENST00000564574 ZNF341Q9BYN7 854 aa24.44■■□□□ 1.5
CLN3-212ENST00000564574 DNAJC18Q9H819 358 aa24.44■■□□□ 1.5
CLN3-212ENST00000564574 MKNK2Q9HBH9 465 aa24.44■■□□□ 1.5
CLN3-212ENST00000564574 SNX14Q9Y5W7 946 aa24.44■■□□□ 1.5
CLN3-212ENST00000564574 TRDNQ13061 729 aa24.43■■□□□ 1.5
CLN3-212ENST00000564574 TATDN1Q6P1N9 297 aa24.43■■□□□ 1.5
CLN3-212ENST00000564574 RASEFQ8IZ41 740 aa24.43■■□□□ 1.5
CLN3-212ENST00000564574 IL17RAQ96F46 866 aa24.43■■□□□ 1.5
CLN3-212ENST00000564574 KRT23Q9C075 422 aa24.43■■□□□ 1.5
CLN3-212ENST00000564574 CEP350Q5VT06 3117 aa24.42■■□□□ 1.5
CLN3-212ENST00000564574 ITGBL1O95965 494 aaPredicted RBP24.42■■□□□ 1.5
CLN3-212ENST00000564574 SHMT1P34896 483 aa24.42■■□□□ 1.5
CLN3-212ENST00000564574 STK11IPQ8N1F8 1099 aa24.42■■□□□ 1.5
CLN3-212ENST00000564574 NCOA7Q8NI08 942 aa24.42■■□□□ 1.5
CLN3-212ENST00000564574 ATAD5Q96QE3 1844 aa24.42■■□□□ 1.5
CLN3-212ENST00000564574 PPP1R12BO60237 982 aaPredicted RBP24.41■■□□□ 1.5
CLN3-212ENST00000564574 STOX1Q6ZVD7 989 aa24.41■■□□□ 1.5
CLN3-212ENST00000564574 MIGA2Q7L4E1 593 aa24.41■■□□□ 1.5
CLN3-212ENST00000564574 ZNF444Q8N0Y2 327 aaPredicted RBP24.41■■□□□ 1.5
CLN3-212ENST00000564574 SLC44A5Q8NCS7 719 aa24.41■■□□□ 1.5
CLN3-212ENST00000564574 CCDC17Q96LX7 622 aa24.41■■□□□ 1.5
CLN3-212ENST00000564574 TBC1D32Q96NH3 1257 aa24.41■■□□□ 1.5
CLN3-212ENST00000564574 TACC3Q9Y6A5 838 aa24.41■■□□□ 1.5
CLN3-212ENST00000564574 TAF6LQ9Y6J9 622 aa24.41■■□□□ 1.5
CLN3-212ENST00000564574 PAPPA2Q9BXP8 1791 aa24.41■■□□□ 1.5
CLN3-212ENST00000564574 NEDD4P46934 1319 aa24.4■■□□□ 1.5
CLN3-212ENST00000564574 FAM196BA6NMK8 535 aa24.4■■□□□ 1.5
CLN3-212ENST00000564574 TRAF5O00463 557 aa24.4■■□□□ 1.5
CLN3-212ENST00000564574 PSMA5P28066 241 aa24.4■■□□□ 1.5
CLN3-212ENST00000564574 DLK2Q6UY11 383 aa24.4■■□□□ 1.5
CLN3-212ENST00000564574 RALYLQ86SE5 291 aaKnown RBP24.4■■□□□ 1.5
CLN3-212ENST00000564574 ESR2Q92731 530 aa24.4■■□□□ 1.5
CLN3-212ENST00000564574 TOMM22Q9NS69 142 aa24.4■■□□□ 1.5
CLN3-212ENST00000564574 ZNF112Q9UJU3 913 aa24.4■■□□□ 1.5
CLN3-212ENST00000564574 GREB1LQ9C091 1923 aaPredicted RBP24.39■■□□□ 1.5
CLN3-212ENST00000564574 DOCK1Q14185 1865 aa24.39■■□□□ 1.5
CLN3-212ENST00000564574 PRDM1O75626 825 aa24.39■■□□□ 1.49
CLN3-212ENST00000564574 HMGB1P09429 215 aaKnown RBP24.39■■□□□ 1.49
CLN3-212ENST00000564574 RASA1P20936 1047 aa24.39■■□□□ 1.49
CLN3-212ENST00000564574 FSTL1Q12841 308 aa24.39■■□□□ 1.49
CLN3-212ENST00000564574 CERKLQ49MI3 558 aaPredicted RBP24.39■■□□□ 1.49
CLN3-212ENST00000564574 TM6SF1Q9BZW5 370 aa24.39■■□□□ 1.49
CLN3-212ENST00000564574 GINM1Q9NU53 330 aa24.39■■□□□ 1.49
CLN3-212ENST00000564574 OTOFQ9HC10 1997 aa24.38■■□□□ 1.49
CLN3-212ENST00000564574 IREB2P48200 963 aaKnown RBP24.38■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms