RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 MTMR7Q9Y216 660 aa15.52■□□□□ 0.08
CLK3-215ENST00000564353 NUTM2BA6NNL0 878 aaPredicted RBP15.52■□□□□ 0.07
CLK3-215ENST00000564353 NUTM2EB1AL46 878 aaPredicted RBP15.52■□□□□ 0.07
CLK3-215ENST00000564353 KCNQ2O43526 872 aa15.52■□□□□ 0.07
CLK3-215ENST00000564353 ITPK1Q13572 414 aa15.52■□□□□ 0.07
CLK3-215ENST00000564353 NUTM2AQ8IVF1 878 aaPredicted RBP15.52■□□□□ 0.07
CLK3-215ENST00000564353 TMEM51Q9NW97 253 aa15.52■□□□□ 0.07
CLK3-215ENST00000564353 SERTAD1Q9UHV2 236 aa15.52■□□□□ 0.07
CLK3-215ENST00000564353 BCL9O00512 1426 aa15.51■□□□□ 0.07
CLK3-215ENST00000564353 MROH5Q6ZUA9 1318 aa15.51■□□□□ 0.07
CLK3-215ENST00000564353 SLIT2O94813 1529 aa15.51■□□□□ 0.07
CLK3-215ENST00000564353 IGHMBP2P38935 993 aaKnown RBP15.51■□□□□ 0.07
CLK3-215ENST00000564353 EARS2Q5JPH6 523 aaKnown RBP15.51■□□□□ 0.07
CLK3-215ENST00000564353 KLHL10Q6JEL2 608 aa15.51■□□□□ 0.07
CLK3-215ENST00000564353 INTS5Q6P9B9 1019 aaKnown RBP15.51■□□□□ 0.07
CLK3-215ENST00000564353 PPP1R13BQ96KQ4 1090 aa15.51■□□□□ 0.07
CLK3-215ENST00000564353 PAXBP1Q9Y5B6 917 aa15.51■□□□□ 0.07
CLK3-215ENST00000564353 NMT2O60551 498 aa15.51■□□□□ 0.07
CLK3-215ENST00000564353 AFMP43652 599 aa15.51■□□□□ 0.07
CLK3-215ENST00000564353 TPM4P67936 248 aa15.51■□□□□ 0.07
CLK3-215ENST00000564353 ERICH2A1L162 156 aa15.5■□□□□ 0.07
CLK3-215ENST00000564353 WNT7AO00755 349 aa15.5■□□□□ 0.07
CLK3-215ENST00000564353 KLRK1P26718 216 aa15.5■□□□□ 0.07
CLK3-215ENST00000564353 IL6STP40189 918 aaPredicted RBP15.5■□□□□ 0.07
CLK3-215ENST00000564353 FMR1Q06787 632 aaKnown RBP eCLIP15.5■□□□□ 0.07
CLK3-215ENST00000564353 RESP18Q5W5W9 173 aa15.5■□□□□ 0.07
CLK3-215ENST00000564353 KRBA2Q6ZNG9 492 aa15.5■□□□□ 0.07
CLK3-215ENST00000564353 SHISA4Q96DD7 197 aa15.5■□□□□ 0.07
CLK3-215ENST00000564353 UBAC1Q9BSL1 405 aa15.5■□□□□ 0.07
CLK3-215ENST00000564353 HPSEQ9Y251 543 aa15.5■□□□□ 0.07
CLK3-215ENST00000564353 STX17P56962 302 aa15.5■□□□□ 0.07
CLK3-215ENST00000564353 CREBRFQ8IUR6 639 aa15.5■□□□□ 0.07
CLK3-215ENST00000564353 KRI1Q8N9T8 703 aaKnown RBP15.5■□□□□ 0.07
CLK3-215ENST00000564353 SHANK3Q9BYB0 1731 aa15.5■□□□□ 0.07
CLK3-215ENST00000564353 AKAP11Q9UKA4 1901 aa15.5■□□□□ 0.07
CLK3-215ENST00000564353 ABCA3Q99758 1704 aa15.5■□□□□ 0.07
CLK3-215ENST00000564353 FMNL1O95466 1100 aaPredicted RBP15.49■□□□□ 0.07
CLK3-215ENST00000564353 MMP1P03956 469 aa15.49■□□□□ 0.07
CLK3-215ENST00000564353 SAFBQ15424 915 aaKnown RBP eCLIP15.49■□□□□ 0.07
CLK3-215ENST00000564353 TRIM22Q8IYM9 498 aa15.49■□□□□ 0.07
CLK3-215ENST00000564353 SMYD4Q8IYR2 804 aaPredicted RBP15.49■□□□□ 0.07
CLK3-215ENST00000564353 ZNF654Q8IZM8 581 aa15.49■□□□□ 0.07
CLK3-215ENST00000564353 JMYQ8N9B5 988 aa15.49■□□□□ 0.07
CLK3-215ENST00000564353 MYH15Q9Y2K3 1946 aa15.49■□□□□ 0.07
CLK3-215ENST00000564353 PLEKHA8P1O95397 391 aa15.49■□□□□ 0.07
CLK3-215ENST00000564353 CDK11BP21127 795 aaKnown RBP15.49■□□□□ 0.07
CLK3-215ENST00000564353 EIF5P55010 431 aaKnown RBP15.49■□□□□ 0.07
CLK3-215ENST00000564353 ADKP55263 362 aaKnown RBP15.49■□□□□ 0.07
CLK3-215ENST00000564353 MYL5Q02045 173 aa15.49■□□□□ 0.07
CLK3-215ENST00000564353 PPARAQ07869 468 aa15.49■□□□□ 0.07
CLK3-215ENST00000564353 OLFM4Q6UX06 510 aa15.49■□□□□ 0.07
CLK3-215ENST00000564353 SGMS1Q86VZ5 419 aa15.49■□□□□ 0.07
CLK3-215ENST00000564353 NACAP1Q9BZK3 213 aa15.49■□□□□ 0.07
CLK3-215ENST00000564353 CCDC87Q9NVE4 849 aa15.49■□□□□ 0.07
CLK3-215ENST00000564353 DNAI1Q9UI46 699 aa15.49■□□□□ 0.07
CLK3-215ENST00000564353 TNKSO95271 1327 aa15.49■□□□□ 0.07
CLK3-215ENST00000564353 GSDMDP57764 484 aa15.49■□□□□ 0.07
CLK3-215ENST00000564353 MAPK8IP2Q13387 824 aaPredicted RBP15.49■□□□□ 0.07
CLK3-215ENST00000564353 FANCBQ8NB91 859 aa15.49■□□□□ 0.07
CLK3-215ENST00000564353 KIF18AQ8NI77 898 aa15.49■□□□□ 0.07
CLK3-215ENST00000564353 DHX58Q96C10 678 aa15.49■□□□□ 0.07
CLK3-215ENST00000564353 EPSTI1Q96J88 318 aa15.49■□□□□ 0.07
CLK3-215ENST00000564353 OSBPL5Q9H0X9 879 aaPredicted RBP15.49■□□□□ 0.07
CLK3-215ENST00000564353 ABCC12Q96J65 1359 aa15.48■□□□□ 0.07
CLK3-215ENST00000564353 NEMFO60524 1076 aa15.48■□□□□ 0.07
CLK3-215ENST00000564353 PPP6R2O75170 966 aa15.48■□□□□ 0.07
CLK3-215ENST00000564353 ERCC6LQ2NKX8 1250 aa15.48■□□□□ 0.07
CLK3-215ENST00000564353 CSRNP2Q9H175 543 aa15.48■□□□□ 0.07
CLK3-215ENST00000564353 TFCP2L1Q9NZI6 479 aa15.48■□□□□ 0.07
CLK3-215ENST00000564353 PLEKHG2Q9H7P9 1386 aa15.48■□□□□ 0.07
CLK3-215ENST00000564353 LOC102724428A0A0B4J2F2 783 aa15.48■□□□□ 0.07
CLK3-215ENST00000564353 SIK1P57059 783 aa15.48■□□□□ 0.07
CLK3-215ENST00000564353 SART3Q15020 963 aaKnown RBP15.48■□□□□ 0.07
CLK3-215ENST00000564353 ERFEQ4G0M1 354 aa15.48■□□□□ 0.07
CLK3-215ENST00000564353 CCDC152Q4G0S7 254 aa15.48■□□□□ 0.07
CLK3-215ENST00000564353 FAM47AQ5JRC9 791 aa15.48■□□□□ 0.07
CLK3-215ENST00000564353 ZNF512BQ96KM6 892 aaPredicted RBP15.48■□□□□ 0.07
CLK3-215ENST00000564353 KRT23Q9C075 422 aa15.48■□□□□ 0.07
CLK3-215ENST00000564353 EPC1Q9H2F5 836 aa15.48■□□□□ 0.07
CLK3-215ENST00000564353 SAMSN1Q9NSI8 373 aaKnown RBP15.48■□□□□ 0.07
CLK3-215ENST00000564353 INTS13Q9NVM9 706 aa15.48■□□□□ 0.07
CLK3-215ENST00000564353 V9GY48 417 aaPredicted RBP15.48■□□□□ 0.07
CLK3-215ENST00000564353 VEGFAP15692 232 aaPredicted RBP15.47■□□□□ 0.07
CLK3-215ENST00000564353 IFNAR1P17181 557 aa15.47■□□□□ 0.07
CLK3-215ENST00000564353 LIFRP42702 1097 aa15.47■□□□□ 0.07
CLK3-215ENST00000564353 PIP4K2BP78356 416 aa15.47■□□□□ 0.07
CLK3-215ENST00000564353 KMT5BQ4FZB7 885 aa15.47■□□□□ 0.07
CLK3-215ENST00000564353 CRACR2BQ8N4Y2 399 aaPredicted RBP15.47■□□□□ 0.07
CLK3-215ENST00000564353 CPLX3Q8WVH0 158 aa15.47■□□□□ 0.07
CLK3-215ENST00000564353 TUBE1Q9UJT0 475 aa15.47■□□□□ 0.07
CLK3-215ENST00000564353 MAN1B1Q9UKM7 699 aa15.47■□□□□ 0.07
CLK3-215ENST00000564353 WDR19Q8NEZ3 1342 aa15.47■□□□□ 0.07
CLK3-215ENST00000564353 ERVV-1B6SEH8 477 aa15.47■□□□□ 0.07
CLK3-215ENST00000564353 CUTAO60888 179 aa15.47■□□□□ 0.07
CLK3-215ENST00000564353 CAMTA2O94983 1202 aa15.47■□□□□ 0.07
CLK3-215ENST00000564353 TOP1P11387 765 aaKnown RBP15.47■□□□□ 0.07
CLK3-215ENST00000564353 DDB1Q16531 1140 aa15.47■□□□□ 0.07
CLK3-215ENST00000564353 NFE2L3Q9Y4A8 694 aa15.47■□□□□ 0.07
CLK3-215ENST00000564353 PAPPAQ13219 1627 aa15.46■□□□□ 0.07
CLK3-215ENST00000564353 MAGEB6P1A0A0J9YX57 407 aa15.46■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms