RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 ELNP15502 786 aa20.75■□□□□ 0.91
CLN3-211ENST00000564091 FXR1P51114 621 aaKnown RBP eCLIP20.75■□□□□ 0.91
CLN3-211ENST00000564091 SH3RF3Q8TEJ3 882 aaPredicted RBP20.75■□□□□ 0.91
CLN3-211ENST00000564091 ZNF280CQ8ND82 737 aa20.74■□□□□ 0.91
CLN3-211ENST00000564091 DBNDD2Q9BQY9 259 aa20.74■□□□□ 0.91
CLN3-211ENST00000564091 TAOK2Q9UL54 1235 aa20.74■□□□□ 0.91
CLN3-211ENST00000564091 RANBP2P49792 3224 aaKnown RBP20.74■□□□□ 0.91
CLN3-211ENST00000564091 CAP2P40123 477 aa20.73■□□□□ 0.91
CLN3-211ENST00000564091 OS9Q13438 667 aaPredicted RBP20.73■□□□□ 0.91
CLN3-211ENST00000564091 TNNI3KQ59H18 835 aa20.73■□□□□ 0.91
CLN3-211ENST00000564091 TTC39AQ5SRH9 613 aa20.73■□□□□ 0.91
CLN3-211ENST00000564091 ZKSCAN2Q63HK3 967 aa20.73■□□□□ 0.91
CLN3-211ENST00000564091 UBE2Q1Q7Z7E8 422 aa20.73■□□□□ 0.91
CLN3-211ENST00000564091 U2AF1L4Q8WU68 220 aaKnown RBP20.73■□□□□ 0.91
CLN3-211ENST00000564091 C1orf115Q9H7X2 142 aa20.73■□□□□ 0.91
CLN3-211ENST00000564091 AATFQ9NY61 560 aaKnown RBP eCLIP20.73■□□□□ 0.91
CLN3-211ENST00000564091 FPGT-TNNI3KV9GXZ4 949 aa20.73■□□□□ 0.91
CLN3-211ENST00000564091 INHAP05111 366 aa20.72■□□□□ 0.91
CLN3-211ENST00000564091 HMGCS2P54868 508 aa20.72■□□□□ 0.91
CLN3-211ENST00000564091 POLA2Q14181 598 aa20.72■□□□□ 0.91
CLN3-211ENST00000564091 NAA16Q6N069 864 aaPredicted RBP20.72■□□□□ 0.91
CLN3-211ENST00000564091 PROCA1Q8NCQ7 364 aaPredicted RBP20.72■□□□□ 0.91
CLN3-211ENST00000564091 AK9Q5TCS8 1911 aa20.72■□□□□ 0.91
CLN3-211ENST00000564091 MYH13Q9UKX3 1938 aa20.72■□□□□ 0.91
CLN3-211ENST00000564091 USP17L5A8MUK1 530 aa20.71■□□□□ 0.91
CLN3-211ENST00000564091 ATP8B2P98198 1209 aa20.71■□□□□ 0.91
CLN3-211ENST00000564091 CCDC158Q5M9N0 1113 aa20.71■□□□□ 0.91
CLN3-211ENST00000564091 CHRDL2Q6WN34 429 aa20.71■□□□□ 0.91
CLN3-211ENST00000564091 MAPKAPK5Q8IW41 473 aa20.71■□□□□ 0.91
CLN3-211ENST00000564091 NOL10Q9BSC4 688 aaKnown RBP20.71■□□□□ 0.91
CLN3-211ENST00000564091 GPR108Q9NPR9 543 aa20.71■□□□□ 0.91
CLN3-211ENST00000564091 PI4KBQ9UBF8 816 aa20.71■□□□□ 0.91
CLN3-211ENST00000564091 PNMA3Q9UL41 463 aa20.71■□□□□ 0.91
CLN3-211ENST00000564091 SURF6O75683 361 aaKnown RBP20.7■□□□□ 0.9
CLN3-211ENST00000564091 SGPL1O95470 568 aa20.7■□□□□ 0.9
CLN3-211ENST00000564091 BAG3O95817 575 aa20.7■□□□□ 0.9
CLN3-211ENST00000564091 CYP2E1P05181 493 aaPredicted RBP20.7■□□□□ 0.9
CLN3-211ENST00000564091 IRF5Q13568 498 aa20.7■□□□□ 0.9
CLN3-211ENST00000564091 FAM110CQ1W6H9 321 aa20.7■□□□□ 0.9
CLN3-211ENST00000564091 ADGRA1Q86SQ6 560 aa20.7■□□□□ 0.9
CLN3-211ENST00000564091 SSH3Q8TE77 659 aa20.7■□□□□ 0.9
CLN3-211ENST00000564091 PXYLP1Q8TE99 480 aa20.7■□□□□ 0.9
CLN3-211ENST00000564091 TGFBRAP1Q8WUH2 860 aa20.7■□□□□ 0.9
CLN3-211ENST00000564091 COA7Q96BR5 231 aa20.7■□□□□ 0.9
CLN3-211ENST00000564091 HERC5Q9UII4 1024 aaKnown RBP20.7■□□□□ 0.9
CLN3-211ENST00000564091 MYH2Q9UKX2 1941 aa20.69■□□□□ 0.9
CLN3-211ENST00000564091 SZT2Q5T011 3432 aa20.69■□□□□ 0.9
CLN3-211ENST00000564091 FARP2O94887 1054 aaPredicted RBP20.69■□□□□ 0.9
CLN3-211ENST00000564091 PPP4CP60510 307 aa20.69■□□□□ 0.9
CLN3-211ENST00000564091 JAG1P78504 1218 aa20.69■□□□□ 0.9
CLN3-211ENST00000564091 DEFB118Q96PH6 123 aa20.69■□□□□ 0.9
CLN3-211ENST00000564091 TRIOBPQ9H2D6 2365 aa20.68■□□□□ 0.9
CLN3-211ENST00000564091 ZAP70P43403 619 aa20.68■□□□□ 0.9
CLN3-211ENST00000564091 HTATIP2Q9BUP3 242 aa20.68■□□□□ 0.9
CLN3-211ENST00000564091 TBC1D2Q9BYX2 928 aa20.68■□□□□ 0.9
CLN3-211ENST00000564091 ASCC2Q9H1I8 757 aaPredicted RBP20.68■□□□□ 0.9
CLN3-211ENST00000564091 DHX36Q9H2U1 1008 aaKnown RBP20.68■□□□□ 0.9
CLN3-211ENST00000564091 PIH1D3Q9NQM4 214 aaKnown RBP20.68■□□□□ 0.9
CLN3-211ENST00000564091 COL2A1P02458 1487 aaPredicted RBP20.68■□□□□ 0.9
CLN3-211ENST00000564091 TFRCP02786 760 aaKnown RBP20.67■□□□□ 0.9
CLN3-211ENST00000564091 GCLCP48506 637 aaPredicted RBP20.67■□□□□ 0.9
CLN3-211ENST00000564091 PABPC4Q13310 644 aaKnown RBP eCLIP20.67■□□□□ 0.93e-6■■■■□ 26.6
CLN3-211ENST00000564091 SHROOM1Q2M3G4 852 aaPredicted RBP20.67■□□□□ 0.9
CLN3-211ENST00000564091 SH3D19Q5HYK7 790 aa20.67■□□□□ 0.9
CLN3-211ENST00000564091 CCDC8Q9H0W5 538 aaPredicted RBP20.67■□□□□ 0.9
CLN3-211ENST00000564091 DNAJC18Q9H819 358 aa20.67■□□□□ 0.9
CLN3-211ENST00000564091 AS3MTQ9HBK9 375 aa20.67■□□□□ 0.9
CLN3-211ENST00000564091 TLR7Q9NYK1 1049 aaKnown RBP20.67■□□□□ 0.9
CLN3-211ENST00000564091 PALD1Q9ULE6 856 aa20.67■□□□□ 0.9
CLN3-211ENST00000564091 FLT1P17948 1338 aa20.67■□□□□ 0.9
CLN3-211ENST00000564091 PLCG2P16885 1265 aa20.66■□□□□ 0.9
CLN3-211ENST00000564091 DYNLL1P63167 89 aaKnown RBP20.66■□□□□ 0.9
CLN3-211ENST00000564091 MTMR2Q13614 643 aa20.66■□□□□ 0.9
CLN3-211ENST00000564091 WDR18Q9BV38 432 aa20.66■□□□□ 0.9
CLN3-211ENST00000564091 RBM27Q9P2N5 1060 aaKnown RBP20.66■□□□□ 0.9
CLN3-211ENST00000564091 SAP30BPQ9UHR5 308 aaKnown RBP20.66■□□□□ 0.9
CLN3-211ENST00000564091 DBNLQ9UJU6 430 aaKnown RBP20.66■□□□□ 0.9
CLN3-211ENST00000564091 DOCK2Q92608 1830 aa20.66■□□□□ 0.9
CLN3-211ENST00000564091 GDF11O95390 407 aa20.65■□□□□ 0.9
CLN3-211ENST00000564091 RLBP1P12271 317 aa20.65■□□□□ 0.9
CLN3-211ENST00000564091 BACE1P56817 501 aa20.65■□□□□ 0.9
CLN3-211ENST00000564091 FOXP4Q8IVH2 680 aaPredicted RBP20.65■□□□□ 0.9
CLN3-211ENST00000564091 ITPRIPQ8IWB1 547 aa20.65■□□□□ 0.9
CLN3-211ENST00000564091 FTSJ3Q8IY81 847 aaKnown RBP20.65■□□□□ 0.9
CLN3-211ENST00000564091 ZNF512BQ96KM6 892 aaPredicted RBP20.65■□□□□ 0.9
CLN3-211ENST00000564091 PAK6Q9NQU5 681 aaPredicted RBP20.65■□□□□ 0.9
CLN3-211ENST00000564091 NOP58Q9Y2X3 529 aaKnown RBP20.65■□□□□ 0.9
CLN3-211ENST00000564091 ZBTB7BO15156 539 aaPredicted RBP20.64■□□□□ 0.89
CLN3-211ENST00000564091 PEX10O60683 326 aa20.64■□□□□ 0.89
CLN3-211ENST00000564091 ASNSP08243 561 aa20.64■□□□□ 0.89
CLN3-211ENST00000564091 CRACR2BQ8N4Y2 399 aaPredicted RBP20.64■□□□□ 0.89
CLN3-211ENST00000564091 EAF2Q96CJ1 260 aaPredicted RBP20.64■□□□□ 0.89
CLN3-211ENST00000564091 P2RX7Q99572 595 aaKnown RBP20.64■□□□□ 0.89
CLN3-211ENST00000564091 TRIM34Q9BYJ4 488 aa20.64■□□□□ 0.89
CLN3-211ENST00000564091 TMOD4Q9NZQ9 345 aa20.64■□□□□ 0.89
CLN3-211ENST00000564091 GJD2Q9UKL4 321 aa20.64■□□□□ 0.89
CLN3-211ENST00000564091 CYP7A1P22680 504 aa20.63■□□□□ 0.89
CLN3-211ENST00000564091 IRX3P78415 501 aaPredicted RBP20.63■□□□□ 0.89
CLN3-211ENST00000564091 HNRNPUQ00839 825 aaKnown RBP eCLIP20.63■□□□□ 0.89
CLN3-211ENST00000564091 METTL16Q86W50 562 aaKnown RBP20.63■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 358.6 ms