RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 FLCNQ8NFG4 579 aa7.27□□□□□ -1.25
VPS35-205ENST00000563984 GATA6Q92908 595 aa7.27□□□□□ -1.25
VPS35-205ENST00000563984 ACSBG1Q96GR2 724 aa7.27□□□□□ -1.25
VPS35-205ENST00000563984 LRRC4CQ9HCJ2 640 aa7.27□□□□□ -1.25
VPS35-205ENST00000563984 PARP2Q9UGN5 583 aa7.27□□□□□ -1.25
VPS35-205ENST00000563984 TTF2Q9UNY4 1162 aaKnown RBP7.27□□□□□ -1.25
VPS35-205ENST00000563984 NCANO14594 1321 aa7.27□□□□□ -1.25
VPS35-205ENST00000563984 ERVK-24P63145 666 aa7.26□□□□□ -1.25
VPS35-205ENST00000563984 DAB2P98082 770 aa7.26□□□□□ -1.25
VPS35-205ENST00000563984 CYP27A1Q02318 531 aa7.26□□□□□ -1.25
VPS35-205ENST00000563984 ZC3H12AQ5D1E8 599 aaKnown RBP7.26□□□□□ -1.25
VPS35-205ENST00000563984 PCNX4Q63HM2 1172 aa7.26□□□□□ -1.25
VPS35-205ENST00000563984 ZNF765Q7L2R6 523 aa7.26□□□□□ -1.25
VPS35-205ENST00000563984 FBXO33Q7Z6M2 555 aa7.26□□□□□ -1.25
VPS35-205ENST00000563984 SMYD4Q8IYR2 804 aaPredicted RBP7.26□□□□□ -1.25
VPS35-205ENST00000563984 PRRG2O14669 202 aa7.25□□□□□ -1.25
VPS35-205ENST00000563984 CELA3AP09093 270 aa7.25□□□□□ -1.25
VPS35-205ENST00000563984 XPCQ01831 940 aaPredicted RBP7.25□□□□□ -1.25
VPS35-205ENST00000563984 PSMD2Q13200 908 aa7.25□□□□□ -1.25
VPS35-205ENST00000563984 TTLL4Q14679 1199 aa7.25□□□□□ -1.25
VPS35-205ENST00000563984 RNF214Q8ND24 703 aa7.25□□□□□ -1.25
VPS35-205ENST00000563984 GRIN3AQ8TCU5 1115 aa7.25□□□□□ -1.25
VPS35-205ENST00000563984 PUS7Q96PZ0 661 aaKnown RBP7.25□□□□□ -1.25
VPS35-205ENST00000563984 C1GALT1Q9NS00 363 aa7.25□□□□□ -1.25
VPS35-205ENST00000563984 RNGTTO60942 597 aaKnown RBP7.24□□□□□ -1.25
VPS35-205ENST00000563984 PKN1Q16512 942 aa7.24□□□□□ -1.25
VPS35-205ENST00000563984 DUSP27Q5VZP5 1158 aa7.24□□□□□ -1.25
VPS35-205ENST00000563984 TMC4Q7Z404 712 aa7.24□□□□□ -1.25
VPS35-205ENST00000563984 RNF19AQ9NV58 838 aa7.24□□□□□ -1.25
VPS35-205ENST00000563984 PCOLCE2Q9UKZ9 415 aa7.24□□□□□ -1.25
VPS35-205ENST00000563984 HCLS1P14317 486 aaPredicted RBP7.23□□□□□ -1.25
VPS35-205ENST00000563984 ITGAEP38570 1179 aa7.23□□□□□ -1.25
VPS35-205ENST00000563984 RPS26P62854 115 aaKnown RBP7.23□□□□□ -1.25
VPS35-205ENST00000563984 CCDC85BQ15834 202 aaPredicted RBP7.23□□□□□ -1.25
VPS35-205ENST00000563984 LILRA6Q6PI73 481 aa7.23□□□□□ -1.25
VPS35-205ENST00000563984 OGFOD3Q6PK18 319 aa7.23□□□□□ -1.25
VPS35-205ENST00000563984 MPRIPQ6WCQ1 1025 aa7.23□□□□□ -1.25
VPS35-205ENST00000563984 CILP2Q8IUL8 1156 aa7.23□□□□□ -1.25
VPS35-205ENST00000563984 POLR3GLQ9BT43 218 aa7.23□□□□□ -1.25
VPS35-205ENST00000563984 ANP32EQ9BTT0 268 aa7.23□□□□□ -1.25
VPS35-205ENST00000563984 ZC3H7BQ9UGR2 993 aaKnown RBP7.23□□□□□ -1.25
VPS35-205ENST00000563984 RASIP1Q5U651 963 aa7.22□□□□□ -1.25
VPS35-205ENST00000563984 TTBK2Q6IQ55 1244 aa7.22□□□□□ -1.25
VPS35-205ENST00000563984 ZBTB7CA1YPR0 619 aa7.21□□□□□ -1.26
VPS35-205ENST00000563984 IGSF3O75054 1194 aa7.21□□□□□ -1.26
VPS35-205ENST00000563984 ST13P50502 369 aaKnown RBP7.21□□□□□ -1.26
VPS35-205ENST00000563984 RING1Q06587 406 aa7.21□□□□□ -1.26
VPS35-205ENST00000563984 CDK5R2Q13319 367 aa7.21□□□□□ -1.26
VPS35-205ENST00000563984 CYP27C1Q4G0S4 372 aa7.21□□□□□ -1.26
VPS35-205ENST00000563984 KSR1Q8IVT5 923 aa7.21□□□□□ -1.26
VPS35-205ENST00000563984 SSU72Q9NP77 194 aaKnown RBP7.21□□□□□ -1.26
VPS35-205ENST00000563984 PCDHA4Q9UN74 947 aa7.21□□□□□ -1.26
VPS35-205ENST00000563984 BIN1O00499 593 aa7.2□□□□□ -1.26
VPS35-205ENST00000563984 FANCGO15287 622 aa7.2□□□□□ -1.26
VPS35-205ENST00000563984 SORBS3O60504 671 aa7.2□□□□□ -1.26
VPS35-205ENST00000563984 NEFMP07197 916 aa7.2□□□□□ -1.26
VPS35-205ENST00000563984 RLBP1P12271 317 aa7.2□□□□□ -1.26
VPS35-205ENST00000563984 TAF1CQ15572 869 aaPredicted RBP7.2□□□□□ -1.26
VPS35-205ENST00000563984 PPM1JQ5JR12 505 aa7.2□□□□□ -1.26
VPS35-205ENST00000563984 PHF6Q8IWS0 365 aaKnown RBP eCLIP7.2□□□□□ -1.26
VPS35-205ENST00000563984 ISL2Q96A47 359 aa7.2□□□□□ -1.26
VPS35-205ENST00000563984 USP31Q70CQ4 1352 aa7.2□□□□□ -1.26
VPS35-205ENST00000563984 DCDC2CA8MYV0 355 aa7.19□□□□□ -1.26
VPS35-205ENST00000563984 B8ZZF3 427 aa7.19□□□□□ -1.26
VPS35-205ENST00000563984 LMNB1P20700 586 aa7.19□□□□□ -1.26
VPS35-205ENST00000563984 MEI1Q5TIA1 1274 aa7.19□□□□□ -1.26
VPS35-205ENST00000563984 C12orf40Q86WS4 652 aa7.19□□□□□ -1.26
VPS35-205ENST00000563984 WFDC3Q8IUB2 231 aa7.19□□□□□ -1.26
VPS35-205ENST00000563984 ELMO3Q96BJ8 720 aa7.19□□□□□ -1.26
VPS35-205ENST00000563984 NOC4LQ9BVI4 516 aaKnown RBP7.19□□□□□ -1.26
VPS35-205ENST00000563984 MRS2Q9HD23 443 aa7.19□□□□□ -1.26
VPS35-205ENST00000563984 PICK1Q9NRD5 415 aa7.19□□□□□ -1.26
VPS35-205ENST00000563984 BUD31P41223 144 aaPredicted RBP7.18□□□□□ -1.26
VPS35-205ENST00000563984 ZNF792Q3KQV3 632 aa7.18□□□□□ -1.26
VPS35-205ENST00000563984 ZNF574Q6ZN55 896 aaPredicted RBP7.18□□□□□ -1.26
VPS35-205ENST00000563984 AGMOQ6ZNB7 445 aa7.18□□□□□ -1.26
VPS35-205ENST00000563984 HDXQ7Z353 690 aa7.18□□□□□ -1.26
VPS35-205ENST00000563984 KCT2Q8NC54 265 aa7.18□□□□□ -1.26
VPS35-205ENST00000563984 CRELD1Q96HD1 420 aa7.18□□□□□ -1.26
VPS35-205ENST00000563984 FAM161BQ96MY7 647 aa7.18□□□□□ -1.26
VPS35-205ENST00000563984 CSADQ9Y600 493 aa7.18□□□□□ -1.26
VPS35-205ENST00000563984 SNCAIPQ9Y6H5 919 aa7.18□□□□□ -1.26
VPS35-205ENST00000563984 CTSHP09668 335 aa7.17□□□□□ -1.26
VPS35-205ENST00000563984 FAM87AP0C7U9 286 aa7.17□□□□□ -1.26
VPS35-205ENST00000563984 NTF4P34130 210 aa7.17□□□□□ -1.26
VPS35-205ENST00000563984 LIG3P49916 1009 aa7.17□□□□□ -1.26
VPS35-205ENST00000563984 TAGLNQ01995 201 aaKnown RBP7.17□□□□□ -1.26
VPS35-205ENST00000563984 PTPN11Q06124 597 aaPredicted RBP7.17□□□□□ -1.26
VPS35-205ENST00000563984 MESP2Q0VG99 397 aa7.17□□□□□ -1.26
VPS35-205ENST00000563984 ZBTB37Q5TC79 503 aa7.17□□□□□ -1.26
VPS35-205ENST00000563984 ERICH6BQ5W0A0 696 aa7.17□□□□□ -1.26
VPS35-205ENST00000563984 FAM181AQ8N9Y4 354 aa7.17□□□□□ -1.26
VPS35-205ENST00000563984 GAL3ST3Q96A11 431 aa7.17□□□□□ -1.26
VPS35-205ENST00000563984 BNIP3Q12983 259 aa7.16□□□□□ -1.26
VPS35-205ENST00000563984 INPP5AQ14642 412 aa7.16□□□□□ -1.26
VPS35-205ENST00000563984 CDC37L1Q7L3B6 337 aa7.16□□□□□ -1.26
VPS35-205ENST00000563984 CYFIP1Q7L576 1253 aa7.16□□□□□ -1.26
VPS35-205ENST00000563984 FAM168AQ92567 244 aa7.16□□□□□ -1.26
VPS35-205ENST00000563984 SLC38A3Q99624 504 aa7.16□□□□□ -1.26
VPS35-205ENST00000563984 BCL2L13Q9BXK5 485 aa7.16□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms