RNA–Protein interactions for RNA: ENST00000563092.1

CKLF-208, Transcript of chemokine like factor, human

TSL 3

Gene CKLF, Length 365 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CKLF-208	ENST00000563092	TMEM121B	Q9BXQ6	578 aa	Predicted RBP	10.46	□□□□□ -0.73
CKLF-208	ENST00000563092	ZHX2	Q9Y6X8	837 aa		10.46	□□□□□ -0.73
CKLF-208	ENST00000563092	VCAN	P13611	3396 aa		10.46	□□□□□ -0.74
CKLF-208	ENST00000563092	SPTBN5	Q9NRC6	3674 aa	Known RBP	10.45	□□□□□ -0.74
CKLF-208	ENST00000563092	PTPRF	P10586	1907 aa		10.45	□□□□□ -0.74
CKLF-208	ENST00000563092	PHIP	Q8WWQ0	1821 aa		10.45	□□□□□ -0.74
CKLF-208	ENST00000563092	GAK	O14976	1311 aa		10.45	□□□□□ -0.74
CKLF-208	ENST00000563092	TNPO2	O14787	897 aa	Known RBP	10.45	□□□□□ -0.74
CKLF-208	ENST00000563092	ENTPD3	O75355	529 aa		10.45	□□□□□ -0.74
CKLF-208	ENST00000563092	IFIT1	P09914	478 aa	Known RBP	10.45	□□□□□ -0.74
CKLF-208	ENST00000563092	PRDX5	P30044	214 aa		10.45	□□□□□ -0.74
CKLF-208	ENST00000563092	NECAB2	Q7Z6G3	386 aa		10.45	□□□□□ -0.74
CKLF-208	ENST00000563092	DEFB123	Q8N688	67 aa		10.45	□□□□□ -0.74
CKLF-208	ENST00000563092	KLHDC4	Q8TBB5	520 aa		10.45	□□□□□ -0.74
CKLF-208	ENST00000563092	LPIN2	Q92539	896 aa		10.45	□□□□□ -0.74
CKLF-208	ENST00000563092	XRN2	Q9H0D6	950 aa	Known RBP eCLIP	10.45	□□□□□ -0.74
CKLF-208	ENST00000563092	MTMR10	Q9NXD2	777 aa		10.45	□□□□□ -0.74
CKLF-208	ENST00000563092	GJD2	Q9UKL4	321 aa		10.45	□□□□□ -0.74
CKLF-208	ENST00000563092	AGTPBP1	Q9UPW5	1226 aa		10.45	□□□□□ -0.74
CKLF-208	ENST00000563092	COL2A1	P02458	1487 aa	Predicted RBP	10.44	□□□□□ -0.74
CKLF-208	ENST00000563092	SNPH	O15079	494 aa		10.44	□□□□□ -0.74
CKLF-208	ENST00000563092	CTNND1	O60716	968 aa	Known RBP	10.44	□□□□□ -0.74
CKLF-208	ENST00000563092	FAM110C	Q1W6H9	321 aa		10.44	□□□□□ -0.74
CKLF-208	ENST00000563092	PICK1	Q9NRD5	415 aa		10.44	□□□□□ -0.74
CKLF-208	ENST00000563092	USP40	Q9NVE5	1235 aa		10.44	□□□□□ -0.74
CKLF-208	ENST00000563092	LAMA2	P24043	3122 aa	Known RBP	10.43	□□□□□ -0.74
CKLF-208	ENST00000563092	DOCK2	Q92608	1830 aa		10.43	□□□□□ -0.74
CKLF-208	ENST00000563092	EYA2	O00167	538 aa		10.43	□□□□□ -0.74
CKLF-208	ENST00000563092	TBC1D12	O60347	775 aa		10.43	□□□□□ -0.74
CKLF-208	ENST00000563092	CHRM1	P11229	460 aa	Predicted RBP	10.43	□□□□□ -0.74
CKLF-208	ENST00000563092	RGS3	P49796	1198 aa		10.43	□□□□□ -0.74
CKLF-208	ENST00000563092	MAP3K21	Q5TCX8	1036 aa		10.43	□□□□□ -0.74
CKLF-208	ENST00000563092	SLC4A10	Q6U841	1118 aa		10.43	□□□□□ -0.74
CKLF-208	ENST00000563092	ATG9A	Q7Z3C6	839 aa		10.43	□□□□□ -0.74
CKLF-208	ENST00000563092	TDH	Q8IZJ6	230 aa		10.43	□□□□□ -0.74
CKLF-208	ENST00000563092	COA7	Q96BR5	231 aa		10.43	□□□□□ -0.74
CKLF-208	ENST00000563092	USP44	Q9H0E7	712 aa		10.43	□□□□□ -0.74
CKLF-208	ENST00000563092	OGDHL	Q9ULD0	1010 aa		10.43	□□□□□ -0.74
CKLF-208	ENST00000563092	RPTOR	Q8N122	1335 aa		10.42	□□□□□ -0.74
CKLF-208	ENST00000563092	DDTL	A6NHG4	134 aa	Predicted RBP	10.42	□□□□□ -0.74
CKLF-208	ENST00000563092	SEMA3E	O15041	775 aa		10.42	□□□□□ -0.74
CKLF-208	ENST00000563092	HMGCR	P04035	888 aa		10.42	□□□□□ -0.74
CKLF-208	ENST00000563092	LDHB	P07195	334 aa	Known RBP	10.42	□□□□□ -0.74
CKLF-208	ENST00000563092	SLURP2	P0DP57	97 aa		10.42	□□□□□ -0.74
CKLF-208	ENST00000563092	COL6A1	P12109	1028 aa		10.42	□□□□□ -0.74
CKLF-208	ENST00000563092	SLC5A1	P13866	664 aa		10.42	□□□□□ -0.74
CKLF-208	ENST00000563092	MAGEA10	P43363	369 aa	Predicted RBP	10.42	□□□□□ -0.74
CKLF-208	ENST00000563092	TREML2	Q5T2D2	321 aa		10.42	□□□□□ -0.74
CKLF-208	ENST00000563092	GADL1	Q6ZQY3	521 aa		10.42	□□□□□ -0.74
CKLF-208	ENST00000563092		Q7L0L9	218 aa		10.42	□□□□□ -0.74
CKLF-208	ENST00000563092	ANKRD13C	Q8N6S4	541 aa		10.42	□□□□□ -0.74
CKLF-208	ENST00000563092	PROCA1	Q8NCQ7	364 aa	Predicted RBP	10.42	□□□□□ -0.74
CKLF-208	ENST00000563092	SMCR8	Q8TEV9	937 aa	Predicted RBP	10.42	□□□□□ -0.74
CKLF-208	ENST00000563092	NBPF3	Q9H094	633 aa		10.42	□□□□□ -0.74
CKLF-208	ENST00000563092	DOCK1	Q14185	1865 aa		10.42	□□□□□ -0.74
CKLF-208	ENST00000563092	LOC285556	D6RIA3	1793 aa		10.42	□□□□□ -0.74
CKLF-208	ENST00000563092	PFAS	O15067	1338 aa		10.41	□□□□□ -0.74
CKLF-208	ENST00000563092	PDS5A	Q29RF7	1337 aa	Known RBP	10.41	□□□□□ -0.74
CKLF-208	ENST00000563092	GCLC	P48506	637 aa	Predicted RBP	10.41	□□□□□ -0.74
CKLF-208	ENST00000563092	PSEN1	P49768	467 aa		10.41	□□□□□ -0.74
CKLF-208	ENST00000563092	FAM109B	Q6ICB4	259 aa	Predicted RBP	10.41	□□□□□ -0.74
CKLF-208	ENST00000563092	C7orf61	Q8IZ16	206 aa		10.41	□□□□□ -0.74
CKLF-208	ENST00000563092	COL25A1	Q9BXS0	654 aa	Predicted RBP	10.41	□□□□□ -0.74
CKLF-208	ENST00000563092	DDX4	Q9NQI0	724 aa	Known RBP	10.41	□□□□□ -0.74
CKLF-208	ENST00000563092	MORF4L1	Q9UBU8	362 aa		10.41	□□□□□ -0.74
CKLF-208	ENST00000563092	ZMYND8	Q9ULU4	1186 aa	Predicted RBP	10.41	□□□□□ -0.74
CKLF-208	ENST00000563092	EYS	Q5T1H1	3165 aa		10.41	□□□□□ -0.74
CKLF-208	ENST00000563092	PLXNB2	O15031	1838 aa		10.4	□□□□□ -0.74
CKLF-208	ENST00000563092	TRIM75P	A6NK02	468 aa		10.4	□□□□□ -0.74
CKLF-208	ENST00000563092	CIAO1	O76071	339 aa		10.4	□□□□□ -0.74
CKLF-208	ENST00000563092	RHBDL3	P58872	404 aa		10.4	□□□□□ -0.74
CKLF-208	ENST00000563092	TRIM32	Q13049	653 aa		10.4	□□□□□ -0.74
CKLF-208	ENST00000563092	SH3D19	Q5HYK7	790 aa		10.4	□□□□□ -0.74
CKLF-208	ENST00000563092	MRPL50	Q8N5N7	158 aa	Known RBP	10.4	□□□□□ -0.74
CKLF-208	ENST00000563092	TBC1D2	Q9BYX2	928 aa		10.4	□□□□□ -0.74
CKLF-208	ENST00000563092	C11orf49	Q9H6J7	331 aa		10.4	□□□□□ -0.74
CKLF-208	ENST00000563092	HMX1	Q9NP08	348 aa	Predicted RBP	10.4	□□□□□ -0.74
CKLF-208	ENST00000563092	FRMD4A	Q9P2Q2	1039 aa	Predicted RBP	10.4	□□□□□ -0.74
CKLF-208	ENST00000563092	PNMA3	Q9UL41	463 aa		10.4	□□□□□ -0.74
CKLF-208	ENST00000563092	DENND2A	Q9ULE3	1009 aa		10.4	□□□□□ -0.74
CKLF-208	ENST00000563092	LRRFIP2	Q9Y608	721 aa	Known RBP	10.4	□□□□□ -0.74
CKLF-208	ENST00000563092	DDX60L	Q5H9U9	1706 aa	Known RBP	10.4	□□□□□ -0.74
CKLF-208	ENST00000563092	MYH13	Q9UKX3	1938 aa		10.4	□□□□□ -0.74
CKLF-208	ENST00000563092	DOCK3	Q8IZD9	2030 aa		10.4	□□□□□ -0.75
CKLF-208	ENST00000563092	PTPRC	P08575	1304 aa		10.39	□□□□□ -0.75
CKLF-208	ENST00000563092	XRCC5	P13010	732 aa	Known RBP	10.39	□□□□□ -0.75
CKLF-208	ENST00000563092	SYN1	P17600	705 aa		10.39	□□□□□ -0.75
CKLF-208	ENST00000563092	PHKA1	P46020	1223 aa		10.39	□□□□□ -0.75
CKLF-208	ENST00000563092	CCDC84	Q86UT8	332 aa	Predicted RBP	10.39	□□□□□ -0.75
CKLF-208	ENST00000563092	ZNF384	Q8TF68	577 aa		10.39	□□□□□ -0.75
CKLF-208	ENST00000563092	TRIB2	Q92519	343 aa		10.39	□□□□□ -0.75
CKLF-208	ENST00000563092	USP6NL	Q92738	828 aa		10.39	□□□□□ -0.75
CKLF-208	ENST00000563092	OSBPL5	Q9H0X9	879 aa	Predicted RBP	10.39	□□□□□ -0.75
CKLF-208	ENST00000563092	ZNF521	Q96K83	1311 aa		10.38	□□□□□ -0.75
CKLF-208	ENST00000563092	GPR75-ASB3	A0A0A6YYF3	556 aa		10.38	□□□□□ -0.75
CKLF-208	ENST00000563092	ZEB1	P37275	1124 aa	Predicted RBP	10.38	□□□□□ -0.75
CKLF-208	ENST00000563092	ATP2B3	Q16720	1220 aa		10.38	□□□□□ -0.75
CKLF-208	ENST00000563092	ZGPAT	Q8N5A5	531 aa	Known RBP	10.38	□□□□□ -0.75
CKLF-208	ENST00000563092	ZNF280C	Q8ND82	737 aa		10.38	□□□□□ -0.75
CKLF-208	ENST00000563092	GUCD1	Q96NT3	240 aa		10.38	□□□□□ -0.75

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